FvH4_3g18670

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
11954049 .. 11957151
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18670.t1

Sequence Viewer

Length: 1020 bp
ATGAGGCCGTCCATGTCGTTGATCAGATCCGTCAGCCGCGTCGCCCGCCGTGGCTACTCATCGGAGTCCGGCCCCCAGCGCAAGGTCGCCGTCCTCGGCGCCGCCGGCGGCATCGGCCAGCCCCTCGCTCTCCTCATGAAGCTCAACCCTCTCGTCTCCCAGCTCTCCCTCTACGATATCGCCGGCACCCCCGGCGTCGCCGCCGACGTCAGCCACATCAACACCAGATCTGAGGTCAAGGGCTACGCTGGCGAGGAACAGCTCGGCGAGGCCTTGGAGGGATGCGACGTCGTGATTATCCCGGCCGGTGTGCCACGTAAGCCCGGAATGACCCGAGACGATCTCTTCAACATTAATGCTGGTATCGTCAGGTCTTTGACCGCCGCAATTGCCAAGTACTGTCCTCATGCGATTATCAATATGATTAGCAACCCTGTGAACTCTACTGTTCCAATCGCGTCGGAGGTGTTGAAGAAGGCCGGGGTTTATGACGAGAAGAAGTTGTTTGGTGTGACTACTCTTGATGTTGTCAGGGCCAAGACTTTCTATGCTGGCAAGGCCGGCGTCCCTGTTGCTGAGGTTAATGTACCAGTTGTTGGTGGCCATGCTGGCATTACCATTCTCCCACTATTTTCTCAGGCTACCCCAAAAGCCAATTTGTCTGATGATTATATCAAGGCTTTGACAAAGAGGACCCAGGACGGAGGGACAGAAGTTGTTGAAGCCAAAGCTGGAAAGGGATCTGCTACATTGTCCATGGCCTATGCTGGAGCTCTCTTTGCTGATGCTTGTCTTAAGGGACTTAATGGGGTCCCTGATGTTGTGGAATGTTCGTATGTGCAATCATGCATCACTGAACTTCCTTTCTTTGCTTCCAAGGTGAGACTAGGGAAGAATGGTGTTGAGGAAGTTTTGGATTTAGGTCCTCTCTCAGACTTTGAAAAGGAAGGATTGGAACATTTGAAGCCTGAGCTGAAATCGTCTATTGAGAAGGGTATCAAGTTCGCCAACCAGAGTTAG

Protein Analysis

340

Amino Acids

35.62

Weight (kDa)

8.46

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ldh_1_N PF00056 28 - 170 9.8e-48 lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C PF02866 172 - 335 8.9e-51 lactate/malate dehydrogenase, alpha/beta C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010945)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 210, 291
AccB1I GGYRCC 2 cut(s) 98, 185
AccB7I CCANNNNNTGG 1 cut(s) 596
AccII CGCG 2 cut(s) 39, 458
AciI CCGC 7 cut(s) 37, 46, 102, 108, 201, 381, 384
AclWI GGATC 2 cut(s) 21, 748
AcoI YGGCCR 3 cut(s) 115, 303, 601
AcyI GRCGYC 5 cut(s) 99, 195, 207, 288, 564
AfaI GTAC 2 cut(s) 398, 588
AfiI CCNNNNNNNGG 2 cut(s) 82, 596
AflII CTTAAG 1 cut(s) 794
AgsI TTSAA 5 cut(s) 349, 472, 722, 941, 964
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 6 cut(s) 142, 163, 262, 731, 773, 973
AluI AGCT 6 cut(s) 142, 163, 262, 731, 773, 973
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 3 cut(s) 160, 330, 877
AlwI GGATC 2 cut(s) 21, 748
Ama87I CYCGRG 1 cut(s) 333
AseI ATTAAT 1 cut(s) 354
AspLEI GCGC 2 cut(s) 81, 101
AspS9I GGNCC 5 cut(s) 71, 534, 693, 811, 923
AsuC2I CCSGG 4 cut(s) 192, 302, 324, 481
AsuHPI GGTGA 1 cut(s) 892
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 3 cut(s) 693, 811, 923
BalI TGGCCA 1 cut(s) 603
BanI GGYRCC 2 cut(s) 98, 185
BanII GRGCYC 1 cut(s) 775
Bbv12I GWGCWC 1 cut(s) 775
BbvCI CCTCAGC 1 cut(s) 576
BceAI ACGGC 2 cut(s) 33, 74
BciT130I CCWGG 1 cut(s) 698
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 4 cut(s) 192, 302, 324, 481
BcoDI GTCTC 3 cut(s) 160, 330, 877
BfaI CTAG 1 cut(s) 887
BfoI RGCGCY 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 794
BglI GCCNNNNNGGC 1 cut(s) 609
BglII AGATCT 1 cut(s) 227
BisI GCNGC 5 cut(s) 37, 102, 109, 201, 384
BlsI GCNGC 5 cut(s) 38, 103, 110, 202, 385
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 5 cut(s) 192, 302, 324, 481, 698
Bme18I GGWCC 3 cut(s) 693, 811, 923
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 5 cut(s) 71, 534, 693, 811, 923
BmiI GGNNCC 6 cut(s) 73, 100, 187, 695, 812, 813
BmrFI CCNGG 5 cut(s) 192, 302, 324, 481, 698
BmsI GCATC 4 cut(s) 120, 272, 775, 858
BplI GAGNNNNNCTC 2 cut(s) 327, 359
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 2 cut(s) 576, 969
BpuMI CCSGG 4 cut(s) 192, 302, 324, 481
BsaAI YACGTR 1 cut(s) 317
BsaHI GRCGYC 5 cut(s) 99, 195, 207, 288, 564
BsaJI CCNNGG 8 cut(s) 49, 94, 190, 273, 480, 696, 756, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 596
Bse118I RCCGGY 4 cut(s) 104, 182, 305, 560
Bse1I ACTGG 1 cut(s) 590
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 8 cut(s) 49, 94, 190, 273, 480, 696, 756, 876
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 82, 596
BseMII CTCAG 5 cut(s) 222, 567, 650, 945, 960
BseNI ACTGG 1 cut(s) 590
BseRI GAGGAG 1 cut(s) 122
BseX3I CGGCCG 1 cut(s) 303
BseYI CCCAGC 2 cut(s) 75, 159
Bsh1236I CGCG 2 cut(s) 39, 458
Bsh1285I CGRYCG 1 cut(s) 306
BshNI GGYRCC 2 cut(s) 98, 185
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 775
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 9 cut(s) 69, 105, 183, 192, 302, 306, 324, 480, 561
BslFI GGGAC 4 cut(s) 551, 721, 797, 813
BslI CCNNNNNNNGG 2 cut(s) 82, 596
BsmAI GTCTC 3 cut(s) 160, 330, 877
BsmBI CGTCTC 2 cut(s) 160, 330
BsmFI GGGAC 4 cut(s) 551, 721, 797, 813
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 775
Bsp143I GATC 5 cut(s) 21, 26, 227, 340, 740
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 7 cut(s) 37, 46, 102, 108, 201, 381, 384
BspCNI CTCAG 5 cut(s) 223, 568, 649, 944, 961
BspFNI CGCG 2 cut(s) 39, 458
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 6 cut(s) 73, 100, 187, 695, 812, 813
BspPI GGATC 2 cut(s) 21, 748
BspT107I GGYRCC 2 cut(s) 98, 185
BspTI CTTAAG 1 cut(s) 794
BsrFI RCCGGY 4 cut(s) 104, 182, 305, 560
BsrI ACTGG 1 cut(s) 590
BssAI RCCGGY 4 cut(s) 104, 182, 305, 560
BssECI CCNNGG 8 cut(s) 49, 94, 190, 273, 480, 696, 756, 876
BssMI GATC 5 cut(s) 21, 26, 227, 340, 740
BssNI GRCGYC 5 cut(s) 99, 195, 207, 288, 564
BssT1I CCWWGG 3 cut(s) 273, 756, 876
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 2 cut(s) 401, 448
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 5 cut(s) 99, 195, 207, 288, 564
BstAFI CTTAAG 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 8 cut(s) 46, 106, 119, 184, 250, 553, 562, 610
BstDEI CTNAG 5 cut(s) 231, 576, 636, 931, 969
BstDSI CCRYGG 2 cut(s) 49, 756
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 2 cut(s) 39, 458
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 2 cut(s) 81, 101
BstKTI GATC 5 cut(s) 24, 29, 230, 343, 743
BstMAI GTCTC 3 cut(s) 160, 330, 877
BstMBI GATC 5 cut(s) 21, 26, 227, 340, 740
BstMCI CGRYCG 1 cut(s) 306
BstNI CCWGG 1 cut(s) 698
BstSCI CCNGG 5 cut(s) 190, 300, 322, 479, 696
BstUI CGCG 2 cut(s) 39, 458
BstX2I RGATCY 3 cut(s) 26, 227, 740
BstYI RGATCY 3 cut(s) 26, 227, 740
BstZI CGGCCG 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 49, 756
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 852
Cac8I GCNNGC 8 cut(s) 46, 106, 119, 184, 250, 553, 562, 610
CciI TCATGA 1 cut(s) 135
CfoI GCGC 2 cut(s) 81, 101
Cfr10I RCCGGY 4 cut(s) 104, 182, 305, 560
Cfr13I GGNCC 5 cut(s) 71, 534, 693, 811, 923
CseI GACGC 4 cut(s) 28, 184, 447, 553
Csp6I GTAC 2 cut(s) 397, 587
CviAII CATG 6 cut(s) 13, 136, 407, 605, 757, 846
CviQI GTAC 2 cut(s) 397, 587
DdeI CTNAG 5 cut(s) 231, 576, 636, 931, 969
DinI GGCGCC 1 cut(s) 100
DpnI GATC 5 cut(s) 23, 28, 229, 342, 742
DpnII GATC 5 cut(s) 21, 26, 227, 340, 740
EaeI YGGCCR 3 cut(s) 115, 303, 601
EagI CGGCCG 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 773
EclXI CGGCCG 1 cut(s) 303
Eco130I CCWWGG 3 cut(s) 273, 756, 876
Eco147I AGGCCT 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 775
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 3 cut(s) 693, 811, 923
Eco52I CGGCCG 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 773
Eco88I CYCGRG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 773
EcoO109I RGGNCCY 3 cut(s) 693, 811, 923
EcoRII CCWGG 1 cut(s) 696
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 3 cut(s) 273, 756, 876
EcoT22I ATGCAT 1 cut(s) 851
EcoT38I GRGCYC 1 cut(s) 775
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 3 cut(s) 273, 756, 876
Esp3I CGTCTC 2 cut(s) 160, 330
FaeI CATG 6 cut(s) 16, 139, 410, 608, 760, 849
FaqI GGGAC 4 cut(s) 551, 721, 797, 813
FatI CATG 6 cut(s) 12, 135, 406, 604, 756, 845
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 5 cut(s) 37, 102, 109, 201, 384
FokI GGATG 1 cut(s) 294
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 5 cut(s) 37, 102, 109, 201, 384
FspBI CTAG 1 cut(s) 887
GlaI GCGC 2 cut(s) 80, 100
GluI GCNGC 5 cut(s) 37, 102, 109, 201, 384
GsaI CCCAGC 2 cut(s) 79, 163
GsuI CTGGAG 1 cut(s) 789
HaeII RGCGCY 1 cut(s) 102
HapII CCGG 9 cut(s) 69, 105, 183, 192, 302, 306, 324, 480, 561
HgaI GACGC 4 cut(s) 28, 184, 447, 553
HhaI GCGC 2 cut(s) 81, 101
Hin1I GRCGYC 5 cut(s) 99, 195, 207, 288, 564
Hin1II CATG 6 cut(s) 16, 139, 410, 608, 760, 849
Hin6I GCGC 2 cut(s) 79, 99
HinP1I GCGC 2 cut(s) 79, 99
HinfI GANTC 1 cut(s) 65
HpaII CCGG 9 cut(s) 69, 105, 183, 192, 302, 306, 324, 480, 561
HphI GGTGA 1 cut(s) 892
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 6 cut(s) 26, 64, 232, 463, 664, 934
Hpy188III TCNNGA 3 cut(s) 136, 292, 521
Hpy8I GTNNAC 1 cut(s) 439
Hpy99I CGWCG 6 cut(s) 44, 200, 209, 290, 293, 463
HpyAV CCTTC 3 cut(s) 469, 941, 985
HpyCH4III ACNGT 2 cut(s) 401, 448
HpyCH4IV ACGT 3 cut(s) 207, 288, 316
HpyCH4V TGCA 2 cut(s) 841, 849
HpyF3I CTNAG 5 cut(s) 231, 576, 636, 931, 969
HpySE526I ACGT 3 cut(s) 207, 288, 316
Hsp92I GRCGYC 5 cut(s) 99, 195, 207, 288, 564
Hsp92II CATG 6 cut(s) 16, 139, 410, 608, 760, 849
HspAI GCGC 2 cut(s) 79, 99
KasI GGCGCC 1 cut(s) 98
KflI GGGWCCC 1 cut(s) 811
KroI GCCGGC 3 cut(s) 104, 182, 560
KroNI GCCGGC 3 cut(s) 106, 184, 562
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 5 cut(s) 21, 26, 227, 340, 740
LmnI GCTCC 1 cut(s) 770
LweI GCATC 4 cut(s) 120, 272, 775, 858
MaeI CTAG 1 cut(s) 887
MaeII ACGT 3 cut(s) 207, 288, 316
MaeIII GTNAC 1 cut(s) 511
MalI GATC 5 cut(s) 23, 28, 229, 342, 742
MboI GATC 5 cut(s) 21, 26, 227, 340, 740
MboII GAAGA 4 cut(s) 337, 484, 508, 904
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 3 cut(s) 26, 227, 740
MhlI GDGCHC 1 cut(s) 775
MlsI TGGCCA 1 cut(s) 603
MluCI AATT 2 cut(s) 387, 655
MluNI TGGCCA 1 cut(s) 603
Mly113I GGCGCC 1 cut(s) 99
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 441
Mox20I TGGCCA 1 cut(s) 603
Mph1103I ATGCAT 1 cut(s) 851
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 3 cut(s) 104, 182, 560
MscI TGGCCA 1 cut(s) 603
MseI TTAA 4 cut(s) 354, 582, 795, 804
Msp20I TGGCCA 1 cut(s) 603
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 9 cut(s) 69, 105, 183, 192, 302, 306, 324, 480, 561
MspR9I CCNGG 5 cut(s) 192, 302, 324, 481, 698
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 2 cut(s) 39, 458
NaeI GCCGGC 3 cut(s) 106, 184, 562
NarI GGCGCC 1 cut(s) 99
NciI CCSGG 4 cut(s) 192, 302, 324, 481
NcoI CCATGG 1 cut(s) 756
NdeII GATC 5 cut(s) 21, 26, 227, 340, 740
NgoMIV GCCGGC 3 cut(s) 104, 182, 560
NlaIII CATG 6 cut(s) 16, 139, 410, 608, 760, 849
NlaIV GGNNCC 6 cut(s) 73, 100, 187, 695, 812, 813
NmeAIII GCCGAG 2 cut(s) 75, 243
NmuCI GTSAC 1 cut(s) 511
NsiI ATGCAT 1 cut(s) 851
PagI TCATGA 1 cut(s) 135
PceI AGGCCT 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdiI GCCGGC 3 cut(s) 106, 184, 562
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 5 cut(s) 38, 103, 110, 202, 385
PleI GAGTC 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 317
PpuMI RGGWCCY 3 cut(s) 693, 811, 923
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 775
Psp5II RGGWCCY 3 cut(s) 693, 811, 923
Psp6I CCWGG 1 cut(s) 696
PspFI CCCAGC 2 cut(s) 75, 159
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 6 cut(s) 73, 100, 187, 695, 812, 813
PspPI GGNCC 5 cut(s) 71, 534, 693, 811, 923
PspPPI RGGWCCY 3 cut(s) 693, 811, 923
PsuI RGATCY 3 cut(s) 26, 227, 740
RsaI GTAC 2 cut(s) 398, 588
RsaNI GTAC 2 cut(s) 397, 587
SacI GAGCTC 1 cut(s) 775
SaqAI TTAA 4 cut(s) 354, 582, 795, 804
SatI GCNGC 5 cut(s) 37, 102, 109, 201, 384
Sau3AI GATC 5 cut(s) 21, 26, 227, 340, 740
Sau96I GGNCC 5 cut(s) 71, 534, 693, 811, 923
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 5 cut(s) 192, 302, 324, 481, 698
SduI GDGCHC 1 cut(s) 775
SfaNI GCATC 4 cut(s) 120, 272, 775, 858
SfoI GGCGCC 1 cut(s) 100
SgrAI CRCCGGYG 1 cut(s) 104
SinI GGWCC 3 cut(s) 693, 811, 923
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
Sse9I AATT 2 cut(s) 387, 655
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 7 cut(s) 37, 46, 102, 108, 201, 381, 384
SspDI GGCGCC 1 cut(s) 98
SspMI CTAG 1 cut(s) 887
SstI GAGCTC 1 cut(s) 775
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 5 cut(s) 190, 300, 322, 479, 696
StyI CCWWGG 3 cut(s) 273, 756, 876
TaaI ACNGT 2 cut(s) 401, 448
TaiI ACGT 3 cut(s) 210, 291, 319
TasI AATT 2 cut(s) 387, 655
TatI WGTACW 1 cut(s) 396
TauI GCSGC 5 cut(s) 39, 104, 111, 203, 386
Tru1I TTAA 4 cut(s) 354, 582, 795, 804
Tru9I TTAA 4 cut(s) 354, 582, 795, 804
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 2 cut(s) 19, 717
TspRI CASTG 1 cut(s) 859
Van91I CCANNNNNTGG 1 cut(s) 596
Vha464I CTTAAG 1 cut(s) 794
VpaK11BI GGWCC 3 cut(s) 693, 811, 923
VspI ATTAAT 1 cut(s) 354
XspI CTAG 1 cut(s) 887
ZraI GACGTC 2 cut(s) 208, 289
ZrmI AGTACT 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.