Prupe.4G170500_v2.0.a1

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
10065949 .. 10068972
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G170500.1

Sequence Viewer

Length: 1020 bp
ATGAGGCCTTCCGTGTCCCTCGTCAGATCCGTACAACGAGTCACTCGCCGGAGCTACTCGTCCGAGGCCGTGCCGGAGCGGAAGGTCGCCGTTCTCGGCGCCGCCGGCGGCATCGGGCAACCTTTATCGCTCCTCATGAAGCTCAACCCTCTTGTCTCCCACCTCTCTCTCTACGATATCGCCGGAACCCCCGGCGTCGCCGCTGACGTCAGCCACATCAACACCAGATCTGAGGTCAAGGGTTACGCCGGTGAAGATCAGCTTGCTCAAGCCCTGGAGGGAGCCGACGTCGTAATCATACCCGCCGGTGTGCCCCGAAAGCCCGGCATGACCCGAGACGATCTCTTCAACATTAATGCCGGTATCGTCAAGGGTCTCACTGCCGCCATCGCCAAGTACTGCCCCAATGCACTGATTAACATGATTAGCAACCCAGTCAACTCTACGGTCCCGATTGCGGCCGAGGTGTTGAAGAAAGCCGGGAAATACGACGATAAGAGGTTGTTTGGTGTCACTACTCTTGATGTGGTCAGGGCAAAGACTTTCTATGCTGGCAAAGCCAATGTTAATGTTGCTGAGGTTAATGTACCAGTCGTTGGTGGCCATGCTGGCATCACCATTCTCCCACTATTTTCTCAGGCTACCCCAACAGCAAATTTGCCTCATGATGTTATCAAGGCTTTGACAAAGAGAACACAAGATGGAGGAACGGAAGTTGTGGAAGCCAAGGCTGGAAAGGGATCTGCAACATTGTCAATGGCCTATGCTGGAGCTCTTTTTGCTGATGCTTGTCTGAAGGGACTTAATGGGGTCCCCGATGTTGTGGAATGTTCGTTCGTGCAATCAAGCGTTACTGAACTTCCTTTCTTTGCTTCTAAGGTGAGGCTCGGAAGGAATGGTGTGGAGGAAGTTTTGGGGTTGGGTAATCTCTCAGACTTTGAAAAGGAAGGATTGGAAAGCCTAAAGCCTGAGCTCAAAGCATCTATTGAGAAGGGTATCAAGTTTGCCAACCAGAATTAG

Protein Analysis

340

Amino Acids

35.56

Weight (kDa)

8.97

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010945)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 210, 291
AccB1I GGYRCC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 596
AccBSI CCGCTC 1 cut(s) 79
AciI CCGC 7 cut(s) 79, 102, 108, 201, 303, 384, 458
AclWI GGATC 2 cut(s) 21, 748
AcoI YGGCCR 2 cut(s) 459, 601
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 815
AcyI GRCGYC 4 cut(s) 99, 195, 207, 288
AfaI GTAC 3 cut(s) 33, 398, 588
AfiI CCNNNNNNNGG 2 cut(s) 457, 596
AgsI TTSAA 3 cut(s) 349, 472, 941
AjnI CCWGG 1 cut(s) 273
AloI GAACNNNNNNTCC 2 cut(s) 818, 850
AluBI AGCT 5 cut(s) 54, 142, 262, 773, 973
AluI AGCT 5 cut(s) 54, 142, 262, 773, 973
Alw21I GWGCWC 2 cut(s) 775, 975
Alw26I GTCTC 3 cut(s) 160, 330, 380
AlwI GGATC 2 cut(s) 21, 748
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 5 cut(s) 5, 66, 459, 601, 759
ApoI RAATTY 1 cut(s) 655
AseI ATTAAT 1 cut(s) 354
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 448, 811
AsuC2I CCSGG 3 cut(s) 192, 324, 481
AsuHPI GGTGA 3 cut(s) 263, 607, 892
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 2 cut(s) 448, 811
BaeGI GKGCMC 1 cut(s) 315
BalI TGGCCA 1 cut(s) 603
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 2 cut(s) 775, 975
Bbv12I GWGCWC 2 cut(s) 775, 975
BbvCI CCTCAGC 1 cut(s) 576
BccI CCATC 2 cut(s) 395, 695
BceAI ACGGC 2 cut(s) 53, 74
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 3 cut(s) 192, 324, 481
BcoDI GTCTC 3 cut(s) 160, 330, 380
BfoI RGCGCY 1 cut(s) 102
BglI GCCNNNNNGGC 1 cut(s) 609
BglII AGATCT 1 cut(s) 227
BisI GCNGC 5 cut(s) 102, 109, 201, 384, 459
BlsI GCNGC 5 cut(s) 103, 110, 202, 385, 460
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 4 cut(s) 192, 275, 324, 481
Bme18I GGWCC 2 cut(s) 448, 811
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 448, 811
BmiI GGNNCC 6 cut(s) 100, 187, 283, 450, 812, 813
BmrFI CCNGG 4 cut(s) 192, 275, 324, 481
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 4 cut(s) 120, 621, 775, 989
BmuI ACTGGG 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 327, 359
BpmI CTGGAG 2 cut(s) 296, 789
Bpu10I CCTNAGC 2 cut(s) 576, 969
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 3 cut(s) 192, 324, 481
BsaHI GRCGYC 4 cut(s) 99, 195, 207, 288
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 5 cut(s) 63, 190, 273, 462, 726
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 457, 596
Bse118I RCCGGY 4 cut(s) 104, 248, 305, 359
Bse1I ACTGG 2 cut(s) 434, 590
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 5 cut(s) 63, 190, 273, 462, 726
BseLI CCNNNNNNNGG 2 cut(s) 457, 596
BseMII CTCAG 5 cut(s) 222, 567, 650, 945, 960
BseNI ACTGG 2 cut(s) 434, 590
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 315
BseX3I CGGCCG 1 cut(s) 459
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 5 cut(s) 7, 68, 461, 603, 761
BshNI GGYRCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 2 cut(s) 775, 975
BsiHKCI CYCGRG 1 cut(s) 333
BslFI GGGAC 3 cut(s) 434, 797, 813
BslI CCNNNNNNNGG 2 cut(s) 457, 596
BsmAI GTCTC 3 cut(s) 160, 330, 380
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 3 cut(s) 434, 797, 813
BsnI GGCC 5 cut(s) 7, 68, 461, 603, 761
Bso31I GGTCTC 1 cut(s) 380
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 3 cut(s) 315, 775, 975
Bsp143I GATC 5 cut(s) 26, 227, 256, 340, 740
BspACI CCGC 7 cut(s) 79, 102, 108, 201, 303, 384, 458
BspANI GGCC 5 cut(s) 7, 68, 461, 603, 761
BspCNI CTCAG 5 cut(s) 223, 568, 649, 944, 961
BspHI TCATGA 2 cut(s) 135, 664
BspLI GGNNCC 6 cut(s) 100, 187, 283, 450, 812, 813
BspPI GGATC 2 cut(s) 21, 748
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 380
BsrBI CCGCTC 1 cut(s) 79
BsrFI RCCGGY 4 cut(s) 104, 248, 305, 359
BsrI ACTGG 2 cut(s) 434, 590
BssAI RCCGGY 4 cut(s) 104, 248, 305, 359
BssECI CCNNGG 5 cut(s) 63, 190, 273, 462, 726
BssMI GATC 5 cut(s) 26, 227, 256, 340, 740
BssNI GRCGYC 4 cut(s) 99, 195, 207, 288
BssT1I CCWWGG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 4 cut(s) 99, 195, 207, 288
BstC8I GCNNGC 4 cut(s) 106, 264, 553, 610
BstDEI CTNAG 6 cut(s) 231, 576, 636, 876, 931, 969
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 5 cut(s) 29, 230, 259, 343, 743
BstMAI GTCTC 3 cut(s) 160, 330, 380
BstMBI GATC 5 cut(s) 26, 227, 256, 340, 740
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 6 cut(s) 105, 319, 389, 557, 609, 779
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 4 cut(s) 190, 273, 322, 479
BstSLI GKGCMC 1 cut(s) 315
BstX2I RGATCY 3 cut(s) 26, 227, 740
BstYI RGATCY 3 cut(s) 26, 227, 740
BstZI CGGCCG 1 cut(s) 459
BsuRI GGCC 5 cut(s) 7, 68, 461, 603, 761
BtgZI GCGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 378, 410
Cac8I GCNNGC 4 cut(s) 106, 264, 553, 610
CciI TCATGA 2 cut(s) 135, 664
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 4 cut(s) 104, 248, 305, 359
Cfr13I GGNCC 2 cut(s) 448, 811
CseI GACGC 1 cut(s) 184
Csp6I GTAC 3 cut(s) 32, 397, 587
CviAII CATG 5 cut(s) 136, 328, 421, 605, 665
CviQI GTAC 3 cut(s) 32, 397, 587
DdeI CTNAG 6 cut(s) 231, 576, 636, 876, 931, 969
DinI GGCGCC 1 cut(s) 100
DpnI GATC 5 cut(s) 28, 229, 258, 342, 742
DpnII GATC 5 cut(s) 26, 227, 256, 340, 740
EaeI YGGCCR 2 cut(s) 459, 601
EagI CGGCCG 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Ecl136II GAGCTC 2 cut(s) 773, 973
EclXI CGGCCG 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 726
Eco147I AGGCCT 1 cut(s) 7
Eco24I GRGCYC 2 cut(s) 775, 975
Eco31I GGTCTC 1 cut(s) 380
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 448, 811
Eco52I CGGCCG 1 cut(s) 459
Eco53kI GAGCTC 2 cut(s) 773, 973
Eco57I CTGAAG 1 cut(s) 815
Eco88I CYCGRG 1 cut(s) 333
EcoICRI GAGCTC 2 cut(s) 773, 973
EcoO109I RGGNCCY 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 726
EcoT38I GRGCYC 2 cut(s) 775, 975
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 726
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 5 cut(s) 139, 331, 424, 608, 668
FaiI YATR 8 cut(s) 137, 299, 329, 422, 549, 606, 666, 765
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 3 cut(s) 434, 797, 813
FatI CATG 5 cut(s) 135, 327, 420, 604, 664
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 5 cut(s) 102, 109, 201, 384, 459
FriOI GRGCYC 2 cut(s) 775, 975
Fsp4HI GCNGC 5 cut(s) 102, 109, 201, 384, 459
GlaI GCGC 1 cut(s) 100
GluI GCNGC 5 cut(s) 102, 109, 201, 384, 459
GsuI CTGGAG 2 cut(s) 296, 789
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 5 cut(s) 7, 68, 461, 603, 761
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 4 cut(s) 99, 195, 207, 288
Hin1II CATG 5 cut(s) 139, 331, 424, 608, 668
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 1 cut(s) 39
HphI GGTGA 3 cut(s) 263, 607, 892
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 6 cut(s) 26, 64, 232, 795, 890, 934
Hpy188III TCNNGA 4 cut(s) 136, 451, 521, 665
Hpy8I GTNNAC 1 cut(s) 439
Hpy99I CGWCG 4 cut(s) 200, 290, 293, 494
HpyAV CCTTC 6 cut(s) 18, 76, 790, 885, 941, 985
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 2 cut(s) 207, 288
HpyCH4V TGCA 3 cut(s) 410, 746, 841
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 319, 389, 557, 609, 779
HpyF3I CTNAG 6 cut(s) 231, 576, 636, 876, 931, 969
HpySE526I ACGT 2 cut(s) 207, 288
Hsp92I GRCGYC 4 cut(s) 99, 195, 207, 288
Hsp92II CATG 5 cut(s) 139, 331, 424, 608, 668
HspAI GCGC 1 cut(s) 99
KasI GGCGCC 1 cut(s) 98
KflI GGGWCCC 1 cut(s) 811
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 5 cut(s) 26, 227, 256, 340, 740
LmnI GCTCC 5 cut(s) 51, 76, 135, 281, 770
LweI GCATC 4 cut(s) 120, 621, 775, 989
MaeII ACGT 2 cut(s) 207, 288
MaeIII GTNAC 4 cut(s) 40, 242, 511, 850
MalI GATC 5 cut(s) 28, 229, 258, 342, 742
MbiI CCGCTC 1 cut(s) 79
MboI GATC 5 cut(s) 26, 227, 256, 340, 740
MboII GAAGA 3 cut(s) 266, 337, 484
MflI RGATCY 3 cut(s) 26, 227, 740
MhlI GDGCHC 3 cut(s) 315, 775, 975
MlsI TGGCCA 1 cut(s) 603
MluCI AATT 2 cut(s) 655, 1015
MluNI TGGCCA 1 cut(s) 603
Mly113I GGCGCC 1 cut(s) 99
MlyI GAGTC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 603
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 104
MscI TGGCCA 1 cut(s) 603
MseI TTAA 5 cut(s) 354, 417, 567, 582, 804
Msp20I TGGCCA 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 203
MspR9I CCNGG 4 cut(s) 192, 275, 324, 481
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 6 cut(s) 105, 319, 389, 557, 609, 779
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 1 cut(s) 99
NciI CCSGG 3 cut(s) 192, 324, 481
NdeII GATC 5 cut(s) 26, 227, 256, 340, 740
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 139, 331, 424, 608, 668
NlaIV GGNNCC 6 cut(s) 100, 187, 283, 450, 812, 813
NmeAIII GCCGAG 2 cut(s) 75, 487
NmuCI GTSAC 2 cut(s) 40, 511
PagI TCATGA 2 cut(s) 135, 664
PceI AGGCCT 1 cut(s) 7
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 204
PdiI GCCGGC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 5 cut(s) 103, 110, 202, 385, 460
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 47
PpuMI RGGWCCY 1 cut(s) 811
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 2 cut(s) 775, 975
Psp5II RGGWCCY 1 cut(s) 811
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 6 cut(s) 100, 187, 283, 450, 812, 813
PspPI GGNCC 2 cut(s) 448, 811
PspPPI RGGWCCY 1 cut(s) 811
PsuI RGATCY 3 cut(s) 26, 227, 740
RsaI GTAC 3 cut(s) 33, 398, 588
RsaNI GTAC 3 cut(s) 32, 397, 587
SacI GAGCTC 2 cut(s) 775, 975
SaqAI TTAA 5 cut(s) 354, 417, 567, 582, 804
SatI GCNGC 5 cut(s) 102, 109, 201, 384, 459
Sau3AI GATC 5 cut(s) 26, 227, 256, 340, 740
Sau96I GGNCC 2 cut(s) 448, 811
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 4 cut(s) 192, 275, 324, 481
SduI GDGCHC 3 cut(s) 315, 775, 975
SfaNI GCATC 4 cut(s) 120, 621, 775, 989
SfoI GGCGCC 1 cut(s) 100
SgrAI CRCCGGYG 3 cut(s) 104, 248, 305
SinI GGWCC 2 cut(s) 448, 811
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 2 cut(s) 655, 1015
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 7 cut(s) 79, 102, 108, 201, 303, 384, 458
SspDI GGCGCC 1 cut(s) 98
SstI GAGCTC 2 cut(s) 775, 975
StuI AGGCCT 1 cut(s) 7
StyD4I CCNGG 4 cut(s) 190, 273, 322, 479
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 2 cut(s) 210, 291
TasI AATT 2 cut(s) 655, 1015
TatI WGTACW 1 cut(s) 396
TauI GCSGC 5 cut(s) 104, 111, 203, 386, 461
Tru1I TTAA 5 cut(s) 354, 417, 567, 582, 804
Tru9I TTAA 5 cut(s) 354, 417, 567, 582, 804
TscAI CASTG 2 cut(s) 385, 417
TseFI GTSAC 2 cut(s) 40, 511
Tsp45I GTSAC 2 cut(s) 40, 511
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 2 cut(s) 19, 725
TspRI CASTG 2 cut(s) 385, 417
Van91I CCANNNNNTGG 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 448, 811
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 655
ZraI GACGTC 2 cut(s) 208, 289
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.