AT3G15020

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
5055741 .. 5058249
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15020.1

Sequence Viewer

Length: 1026 bp
ATGTTCCGATCAATGATTGTTCGATCTGCTTCCCCAGTGAAGCAGGGTCTTCTCCGCAGAGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCGGTGCCGCCGGTGGGATCGGCCAGCCACTTTCTCTTCTCATGAAGCTTAACCCTCTCGTCTCTTCTCTCTCCCTCTATGATATCGCCAACACTCCCGGCGTTGCTGCTGACGTCGGTCACATCAACACCCGATCTCAGGTTTCTGGGTACATGGGTGATGATGATTTGGGGAAAGCTCTAGAAGGCGCTGACCTCGTCATTATTCCAGCTGGTGTCCCAAGGAAGCCTGGCATGACCCGTGATGATCTTTTCAACATCAATGCTGGCATTGTCAAGAACCTCAGCATCGCCATCGCCAAGTATTGCCCACAAGCACTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCAATTGCAGCTGAGATTTTTAAGAAGGCTGGTACCTATGATGAGAAGAAATTATTCGGTGTCACCACTCTTGATGTTGTCAGGGCTAGGACTTTCTATGCTGGAAAATCGGATGTCAATGTTGCAGAGGTTAATGTTCCAGTTGTTGGTGGTCATGCTGGCATCACGATTCTTCCTCTCTTTTCTCAGGCTAGCCCTCAAGCCAACTTGTCGGATGATTTAATCAGGGCCCTCACAAAGCGTACCCAGGACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAATGGCCTATGCGGGAGCACTCTTTGCTGATGCATGCTTAAAGGGACTCAACGGTGTTCCAAATGTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAAAGGTAAGACTGGGAAAGAACGGAGTGGAGGAAGTGCTAGATCTAGGGCCACTCTCAGACTTTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGCATCAAATTTGCCAACCAATGA

Protein Analysis

341

Amino Acids

35.87

Weight (kDa)

8.3

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ldh_1_N PF00056 31 - 173 4.1e-46 lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C PF02866 175 - 338 9.6e-50 lactate/malate dehydrogenase, alpha/beta C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010945)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
Acc65I GGTACC 1 cut(s) 491
AccB1I GGYRCC 2 cut(s) 107, 491
AccB7I CCANNNNNTGG 1 cut(s) 605
AciI CCGC 3 cut(s) 55, 111, 776
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 1010
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 3 cut(s) 254, 493, 703
AfiI CCNNNNNNNGG 3 cut(s) 117, 241, 605
AgsI TTSAA 2 cut(s) 358, 950
AjnI CCWGG 2 cut(s) 331, 705
AluBI AGCT 7 cut(s) 151, 281, 314, 470, 740, 755, 868
AluI AGCT 7 cut(s) 151, 281, 314, 470, 740, 755, 868
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 128
AoxI GGCC 4 cut(s) 124, 687, 768, 932
ApaI GGGCCC 1 cut(s) 691
ApeKI GCWGC 2 cut(s) 209, 467
ApoI RAATTY 1 cut(s) 1010
Asp700I GAANNNNTTC 3 cut(s) 78, 512, 748
Asp718I GGTACC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 3 cut(s) 687, 688, 932
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 3 cut(s) 272, 514, 853
AsuNHI GCTAGC 1 cut(s) 650
BaeGI GKGCMC 1 cut(s) 691
BaeI ACNNNNGTAYC 2 cut(s) 244, 277
BanI GGYRCC 2 cut(s) 107, 491
BanII GRGCYC 1 cut(s) 691
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 784
BbvCI CCTCAGC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 196, 479
BccI CCATC 2 cut(s) 404, 866
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 379, 413
BciT130I CCWGG 2 cut(s) 333, 707
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 5 cut(s) 284, 546, 651, 923, 929
BfoI RGCGCY 1 cut(s) 294
BglI GCCNNNNNGGC 1 cut(s) 974
BglII AGATCT 1 cut(s) 925
BisI GCNGC 3 cut(s) 111, 210, 468
BlsI GCNGC 3 cut(s) 112, 211, 469
Bme1390I CCNGG 3 cut(s) 201, 333, 707
BmgT120I GGNCC 3 cut(s) 687, 688, 932
BmiI GGNNCC 3 cut(s) 109, 493, 689
BmrFI CCNGG 3 cut(s) 201, 333, 707
BmrI ACTGGG 2 cut(s) 29, 905
BmsI GCATC 4 cut(s) 399, 630, 784, 1014
BmtI GCTAGC 1 cut(s) 654
BmuI ACTGGG 2 cut(s) 29, 905
BoxI GACNNNNGTC 2 cut(s) 219, 722
BpiI GAAGAC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 386
BpuEI CTTGAG 2 cut(s) 642, 956
BpuMI CCSGG 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 103, 323, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 241, 605
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 3 cut(s) 35, 599, 900
BseBI CCWGG 2 cut(s) 333, 707
BseDI CCNNGG 3 cut(s) 103, 323, 705
BseGI GGATG 3 cut(s) 99, 577, 679
BseLI CCNNNNNNNGG 3 cut(s) 117, 241, 605
BseMII CTCAG 5 cut(s) 254, 400, 462, 659, 954
BseNI ACTGG 3 cut(s) 35, 599, 900
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 2 cut(s) 196, 479
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 4 cut(s) 126, 689, 770, 934
BshNI GGYRCC 2 cut(s) 107, 491
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 2 cut(s) 114, 201
BslFI GGGAC 3 cut(s) 305, 730, 822
BslI CCNNNNNNNGG 3 cut(s) 117, 241, 605
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 3 cut(s) 305, 730, 822
BsmI GAATGC 1 cut(s) 842
BsnI GGCC 4 cut(s) 126, 689, 770, 934
Bsp120I GGGCCC 1 cut(s) 687
Bsp1286I GDGCHC 2 cut(s) 691, 784
Bsp143I GATC 8 cut(s) 8, 23, 85, 120, 236, 349, 432, 925
BspACI CCGC 3 cut(s) 55, 111, 776
BspANI GGCC 4 cut(s) 126, 689, 770, 934
BspCNI CTCAG 5 cut(s) 253, 399, 463, 658, 953
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 3 cut(s) 109, 493, 689
BspOI GCTAGC 1 cut(s) 654
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 2 cut(s) 107, 491
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 3 cut(s) 35, 599, 900
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 103, 323, 705
BssMI GATC 8 cut(s) 8, 23, 85, 120, 236, 349, 432, 925
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 333, 707
Bst4CI ACNGT 2 cut(s) 457, 818
Bst6I CTCTTC 2 cut(s) 144, 172
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 788
BstC8I GCNNGC 5 cut(s) 128, 370, 619, 652, 799
BstDEI CTNAG 6 cut(s) 240, 386, 471, 645, 940, 961
BstF5I GGATG 3 cut(s) 99, 577, 679
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 8 cut(s) 11, 26, 88, 123, 239, 352, 435, 928
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 8 cut(s) 8, 23, 85, 120, 236, 349, 432, 925
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 788, 974
BstNI CCWGG 2 cut(s) 333, 707
BstNSI RCATGY 1 cut(s) 801
BstPAI GACNNNNGTC 2 cut(s) 219, 722
BstSCI CCNGG 3 cut(s) 199, 331, 705
BstSLI GKGCMC 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 196, 479
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
BsuRI GGCC 4 cut(s) 126, 689, 770, 934
BtgZI GCGATG 2 cut(s) 376, 382
BtsCI GGATG 3 cut(s) 99, 577, 679
BtsIMutI CAGTG 2 cut(s) 42, 453
Cac8I GCNNGC 5 cut(s) 128, 370, 619, 652, 799
CciI TCATGA 1 cut(s) 144
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 687, 688, 932
Csp6I GTAC 3 cut(s) 253, 492, 702
CspCI CAANNNNNGTGG 2 cut(s) 813, 848
CviAII CATG 6 cut(s) 145, 256, 337, 430, 614, 798
CviQI GTAC 3 cut(s) 253, 492, 702
DdeI CTNAG 6 cut(s) 240, 386, 471, 645, 940, 961
DpnI GATC 8 cut(s) 10, 25, 87, 122, 238, 351, 434, 927
DpnII GATC 8 cut(s) 8, 23, 85, 120, 236, 349, 432, 925
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 144, 172
EarI CTCTTC 2 cut(s) 144, 172
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 691
Eco32I GATATC 1 cut(s) 187
EcoO109I RGGNCCY 2 cut(s) 687, 688
EcoRII CCWGG 2 cut(s) 331, 705
EcoRV GATATC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 799
EcoT38I GRGCYC 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 323
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 6 cut(s) 148, 259, 340, 433, 617, 801
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FaqI GGGAC 3 cut(s) 305, 730, 822
FatI CATG 6 cut(s) 144, 255, 336, 429, 613, 797
FauI CCCGC 1 cut(s) 769
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 3 cut(s) 111, 210, 468
FokI GGATG 3 cut(s) 86, 584, 686
FriOI GRGCYC 1 cut(s) 691
Fsp4HI GCNGC 3 cut(s) 111, 210, 468
FspBI CTAG 5 cut(s) 284, 546, 651, 923, 929
GlaI GCGC 1 cut(s) 292
GluI GCNGC 3 cut(s) 111, 210, 468
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 4 cut(s) 126, 689, 770, 934
HapII CCGG 2 cut(s) 114, 201
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 6 cut(s) 148, 259, 340, 433, 617, 801
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 4 cut(s) 63, 74, 628, 810
HpaII CCGG 2 cut(s) 114, 201
HphI GGTGA 3 cut(s) 272, 514, 853
Hpy166II GTNNAC 2 cut(s) 427, 448
Hpy188I TCNGA 5 cut(s) 8, 73, 571, 673, 943
Hpy188III TCNNGA 7 cut(s) 83, 145, 284, 379, 530, 625, 997
Hpy8I GTNNAC 2 cut(s) 427, 448
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 4 cut(s) 281, 478, 950, 994
HpyCH4III ACNGT 2 cut(s) 457, 818
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 467, 584, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 788, 974
HpyF3I CTNAG 6 cut(s) 240, 386, 471, 645, 940, 961
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 6 cut(s) 148, 259, 340, 433, 617, 801
HspAI GCGC 1 cut(s) 291
KpnI GGTACC 1 cut(s) 495
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 8 cut(s) 8, 23, 85, 120, 236, 349, 432, 925
LmnI GCTCC 1 cut(s) 779
Lsp1109I GCAGC 2 cut(s) 196, 479
LweI GCATC 4 cut(s) 399, 630, 784, 1014
MaeI CTAG 5 cut(s) 284, 546, 651, 923, 929
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 221, 520
MalI GATC 8 cut(s) 10, 25, 87, 122, 238, 351, 434, 927
MboI GATC 8 cut(s) 8, 23, 85, 120, 236, 349, 432, 925
MboII GAAGA 6 cut(s) 41, 131, 159, 517, 623, 868
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 2 cut(s) 691, 784
MluCI AATT 3 cut(s) 462, 509, 1010
MlyI GAGTC 1 cut(s) 804
MmeI TCCRAC 1 cut(s) 651
Mph1103I ATGCAT 1 cut(s) 799
MroXI GAANNNNTTC 3 cut(s) 78, 512, 748
MseI TTAA 5 cut(s) 153, 480, 591, 680, 803
MspA1I CMGCKG 2 cut(s) 314, 470
MspI CCGG 2 cut(s) 114, 201
MspR9I CCNGG 3 cut(s) 201, 333, 707
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 842
MvaI CCWGG 2 cut(s) 333, 707
MwoI GCNNNNNNNGC 2 cut(s) 788, 974
NciI CCSGG 1 cut(s) 201
NdeII GATC 8 cut(s) 8, 23, 85, 120, 236, 349, 432, 925
NheI GCTAGC 1 cut(s) 650
NlaIII CATG 6 cut(s) 148, 259, 340, 433, 617, 801
NlaIV GGNNCC 3 cut(s) 109, 493, 689
NmuCI GTSAC 2 cut(s) 221, 520
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 1 cut(s) 801
PaeI GCATGC 1 cut(s) 801
PagI TCATGA 1 cut(s) 144
PctI GAATGC 1 cut(s) 842
PdmI GAANNNNTTC 3 cut(s) 78, 512, 748
PfeI GAWTC 3 cut(s) 63, 74, 628
PflFI GACNNNGTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 3 cut(s) 112, 211, 469
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 804
PpsI GAGTC 1 cut(s) 804
PshAI GACNNNNGTC 2 cut(s) 219, 722
Psp6I CCWGG 2 cut(s) 331, 705
PspGI CCWGG 2 cut(s) 331, 705
PspN4I GGNNCC 3 cut(s) 109, 493, 689
PspOMI GGGCCC 1 cut(s) 687
PspPI GGNCC 3 cut(s) 687, 688, 932
PsuI RGATCY 1 cut(s) 925
PsyI GACNNNGTC 1 cut(s) 299
PvuI CGATCG 1 cut(s) 88
PvuII CAGCTG 2 cut(s) 314, 470
RsaI GTAC 3 cut(s) 254, 493, 703
RsaNI GTAC 3 cut(s) 253, 492, 702
SaqAI TTAA 5 cut(s) 153, 480, 591, 680, 803
SatI GCNGC 3 cut(s) 111, 210, 468
Sau3AI GATC 8 cut(s) 8, 23, 85, 120, 236, 349, 432, 925
Sau96I GGNCC 3 cut(s) 687, 688, 932
SchI GAGTC 1 cut(s) 804
ScrFI CCNGG 3 cut(s) 201, 333, 707
SduI GDGCHC 2 cut(s) 691, 784
SfaNI GCATC 4 cut(s) 399, 630, 784, 1014
SgrAI CRCCGGYG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 657, 971
SmoI CTYRAG 2 cut(s) 657, 971
SphI GCATGC 1 cut(s) 801
Sse9I AATT 3 cut(s) 462, 509, 1010
SsiI CCGC 3 cut(s) 55, 111, 776
SspMI CTAG 5 cut(s) 284, 546, 651, 923, 929
StyD4I CCNGG 3 cut(s) 199, 331, 705
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 457, 818
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 22, 996
TaqII GACCGA 1 cut(s) 209
TasI AATT 3 cut(s) 462, 509, 1010
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 63, 74, 628
Tru1I TTAA 5 cut(s) 153, 480, 591, 680, 803
Tru9I TTAA 5 cut(s) 153, 480, 591, 680, 803
TscAI CASTG 2 cut(s) 42, 460
TseFI GTSAC 2 cut(s) 221, 520
TseI GCWGC 2 cut(s) 209, 467
Tsp45I GTSAC 2 cut(s) 221, 520
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 2 cut(s) 726, 921
TspRI CASTG 2 cut(s) 42, 460
Tth111I GACNNNGTC 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 605
XapI RAATTY 1 cut(s) 1010
XbaI TCTAGA 1 cut(s) 283
XceI RCATGY 1 cut(s) 801
XmnI GAANNNNTTC 3 cut(s) 78, 512, 748
XspI CTAG 5 cut(s) 284, 546, 651, 923, 929
ZraI GACGTC 1 cut(s) 217
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.