pycom03g18530

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
19515043 .. 19517796
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g18530.7

Sequence Viewer

Length: 1020 bp
ATGAGGCCTTCAATGTCCATCGCCAGATCCGTACACCGAGTCGCCCGCCGCAGCTACTCATCCGCCTCCGTCCCCGAGAGGAAGGTCGCAGTCCTCGGCGCCGCCGGCGGCATCGGCCAGCCCCTGGCTCTCCTCATGAAGCTCAACCCCCTCGTCTCCCACCTCTCCCTTTACGATATCGCCGGAACCCCCGGTGTCGCCGCTGACGTCAGCCACATCAACACCAGATCTGAGGTCAAAGGTTATGCCGGAGAAGAGCAGCTTGCTCAAGCCTTGGAGGGAGCCGACGTCGTAATTATCCCCGCCGGAGTGCCCCGAAAGCCCGGCATGACCCGAGACGATCTCTTCAACATTAATGCCGGTATCGTCAAGGGTCTCACTACCGCCATTGCTAAGTACTGCCCCAATGCACTGATCAACATGATTAGTAACCCAGTCAACTCTACAGTCCCGATTGCGGCCGAGGTGTTGAAGAAGGCCGGGAAGTACGACGAGAAGAGGTTGTTTGGTGTCACTACTCTTGATGTGGTCAGGGCCAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCTGAGGTTAATGTACCAGTTGTTGGTGGTCATGCTGGCATCACCATTCTGCCACTATTTTCTCAGGCTACCCCGGCAGCCAATTTGCCTCATGATGTTATTGTAGCTTTGACAAAGAGAACACAAGATGGAGGAACGGAAGTTGTGGAGGCGAAGGCTGGAAAGGGATCGGCAACATTGTCAATGGCCTATGCTGGAGCTATTTTCGCTGATGCTTGTCTGAAGGGACTTAATGGAGTACCCGATGTTGTGGAATGTTCGTATGTGCAATCAAGCATCACTGAACTTCCTTTCTTTGCTTCTAAGGTGAGGCTTGGAAAGAATGGAGTCGAGGAAGTTTTGGGGTTGGGTAATCTCTCGGACTTTGAACAGGAAGGACTCCAAAAATTGATCCCTGAGCTCAAATCATCAATCGAGAAGGGTATCCAGTTTGCCAACCAGAGTTAG

Protein Analysis

340

Amino Acids

35.5

Weight (kDa)

8.82

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010945)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 210, 291
AccB1I GGYRCC 1 cut(s) 98
AccB7I CCANNNNNTGG 2 cut(s) 124, 596
AciI CCGC 9 cut(s) 46, 49, 63, 102, 108, 201, 303, 384, 458
AclWI GGATC 3 cut(s) 21, 748, 958
AcoI YGGCCR 2 cut(s) 115, 459
AcuI CTGAAG 1 cut(s) 815
AcyI GRCGYC 3 cut(s) 99, 207, 288
AfaI GTAC 5 cut(s) 33, 398, 488, 588, 813
AfiI CCNNNNNNNGG 3 cut(s) 124, 457, 596
AgsI TTSAA 4 cut(s) 12, 349, 472, 941
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 6 cut(s) 54, 142, 262, 680, 773, 973
AluI AGCT 6 cut(s) 54, 142, 262, 680, 773, 973
Alw21I GWGCWC 1 cut(s) 975
Alw26I GTCTC 3 cut(s) 160, 330, 380
AlwI GGATC 3 cut(s) 21, 748, 958
AlwNI CAGNNNCTG 1 cut(s) 124
Ama87I CYCGRG 2 cut(s) 74, 333
AoxI GGCC 7 cut(s) 5, 115, 459, 477, 534, 558, 759
ApeKI GCWGC 3 cut(s) 51, 259, 650
AseI ATTAAT 1 cut(s) 354
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 534
AsuC2I CCSGG 4 cut(s) 192, 324, 481, 647
AsuHPI GGTGA 2 cut(s) 607, 892
AvaI CYCGRG 2 cut(s) 74, 333
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 975
Bbv12I GWGCWC 1 cut(s) 975
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 3 cut(s) 63, 271, 662
BccI CCATC 2 cut(s) 26, 695
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 1007
BclI TGATCA 1 cut(s) 414
BcnI CCSGG 4 cut(s) 192, 324, 481, 647
BcoDI GTCTC 3 cut(s) 160, 330, 380
BfmI CTRYAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 102
BfuI GTATCC 1 cut(s) 1007
BglII AGATCT 1 cut(s) 227
BisI GCNGC 8 cut(s) 49, 52, 102, 109, 201, 260, 459, 651
BlsI GCNGC 8 cut(s) 50, 53, 103, 110, 202, 261, 460, 652
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 5 cut(s) 125, 192, 324, 481, 647
BmeT110I CYCGRG 2 cut(s) 74, 333
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 3 cut(s) 100, 187, 283
BmrFI CCNGG 5 cut(s) 125, 192, 324, 481, 647
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 4 cut(s) 120, 621, 775, 858
BmuI ACTGGG 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 327, 359
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 2 cut(s) 576, 969
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 4 cut(s) 192, 324, 481, 647
BsaHI GRCGYC 3 cut(s) 99, 207, 288
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 6 cut(s) 94, 123, 190, 273, 462, 645
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 457, 596
Bse118I RCCGGY 2 cut(s) 104, 359
Bse1I ACTGG 3 cut(s) 434, 590, 1000
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 6 cut(s) 94, 123, 190, 273, 462, 645
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 124, 457, 596
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 4 cut(s) 222, 567, 650, 960
BseNI ACTGG 3 cut(s) 434, 590, 1000
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 315
BseX3I CGGCCG 1 cut(s) 459
BseXI GCAGC 3 cut(s) 63, 271, 662
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 7 cut(s) 7, 117, 461, 479, 536, 560, 761
BshNI GGYRCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 975
BsiHKCI CYCGRG 2 cut(s) 74, 333
BsiSI CCGG 9 cut(s) 105, 183, 192, 249, 306, 324, 360, 480, 647
BslFI GGGAC 3 cut(s) 56, 434, 813
BslI CCNNNNNNNGG 3 cut(s) 124, 457, 596
BsmAI GTCTC 3 cut(s) 160, 330, 380
BsmBI CGTCTC 2 cut(s) 160, 330
BsmFI GGGAC 3 cut(s) 56, 434, 813
BsnI GGCC 7 cut(s) 7, 117, 461, 479, 536, 560, 761
Bso31I GGTCTC 1 cut(s) 380
BsoBI CYCGRG 2 cut(s) 74, 333
Bsp1286I GDGCHC 2 cut(s) 315, 975
Bsp143I GATC 6 cut(s) 26, 227, 340, 414, 740, 963
BspACI CCGC 9 cut(s) 46, 49, 63, 102, 108, 201, 303, 384, 458
BspANI GGCC 7 cut(s) 7, 117, 461, 479, 536, 560, 761
BspCNI CTCAG 4 cut(s) 223, 568, 649, 961
BspHI TCATGA 2 cut(s) 135, 664
BspLI GGNNCC 3 cut(s) 100, 187, 283
BspPI GGATC 3 cut(s) 21, 748, 958
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 2 cut(s) 104, 359
BsrI ACTGG 3 cut(s) 434, 590, 1000
BssAI RCCGGY 2 cut(s) 104, 359
BssECI CCNNGG 6 cut(s) 94, 123, 190, 273, 462, 645
BssMI GATC 6 cut(s) 26, 227, 340, 414, 740, 963
BssNI GRCGYC 3 cut(s) 99, 207, 288
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 3 cut(s) 249, 350, 491
BstACI GRCGYC 3 cut(s) 99, 207, 288
BstC8I GCNNGC 5 cut(s) 46, 106, 119, 264, 610
BstDEI CTNAG 6 cut(s) 231, 393, 576, 636, 876, 969
BstF5I GGATG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 6 cut(s) 29, 230, 343, 417, 743, 966
BstMAI GTCTC 3 cut(s) 160, 330, 380
BstMBI GATC 6 cut(s) 26, 227, 340, 414, 740, 963
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 6 cut(s) 105, 114, 319, 557, 647, 779
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 5 cut(s) 123, 190, 322, 479, 645
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 63, 271, 662
BstX2I RGATCY 2 cut(s) 26, 227
BstYI RGATCY 2 cut(s) 26, 227
BstZI CGGCCG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 1007
BsuRI GGCC 7 cut(s) 7, 117, 461, 479, 536, 560, 761
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 410, 852
Cac8I GCNNGC 5 cut(s) 46, 106, 119, 264, 610
CaiI CAGNNNCTG 1 cut(s) 124
CciI TCATGA 2 cut(s) 135, 664
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 2 cut(s) 104, 359
Cfr13I GGNCC 1 cut(s) 534
Csp6I GTAC 5 cut(s) 32, 397, 487, 587, 812
CviAII CATG 5 cut(s) 136, 328, 421, 605, 665
CviQI GTAC 5 cut(s) 32, 397, 487, 587, 812
DdeI CTNAG 6 cut(s) 231, 393, 576, 636, 876, 969
DinI GGCGCC 1 cut(s) 100
DpnI GATC 6 cut(s) 28, 229, 342, 416, 742, 965
DpnII GATC 6 cut(s) 26, 227, 340, 414, 740, 963
EaeI YGGCCR 2 cut(s) 115, 459
EagI CGGCCG 1 cut(s) 459
Eam1104I CTCTTC 3 cut(s) 249, 350, 491
EarI CTCTTC 3 cut(s) 249, 350, 491
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 973
EclXI CGGCCG 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 975
Eco31I GGTCTC 1 cut(s) 380
Eco32I GATATC 1 cut(s) 178
Eco52I CGGCCG 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 973
Eco57I CTGAAG 1 cut(s) 815
Eco88I CYCGRG 2 cut(s) 74, 333
EcoICRI GAGCTC 1 cut(s) 973
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 975
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 2 cut(s) 160, 330
FaeI CATG 5 cut(s) 139, 331, 424, 608, 668
FaiI YATR 9 cut(s) 137, 246, 329, 422, 549, 606, 666, 765, 837
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 3 cut(s) 56, 434, 813
FatI CATG 5 cut(s) 135, 327, 420, 604, 664
FauI CCCGC 2 cut(s) 53, 310
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 8 cut(s) 49, 52, 102, 109, 201, 260, 459, 651
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 8 cut(s) 49, 52, 102, 109, 201, 260, 459, 651
GlaI GCGC 1 cut(s) 100
GluI GCNGC 8 cut(s) 49, 52, 102, 109, 201, 260, 459, 651
GsuI CTGGAG 1 cut(s) 789
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 7 cut(s) 7, 117, 461, 479, 536, 560, 761
HapII CCGG 9 cut(s) 105, 183, 192, 249, 306, 324, 360, 480, 647
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 3 cut(s) 99, 207, 288
Hin1II CATG 5 cut(s) 139, 331, 424, 608, 668
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 3 cut(s) 39, 900, 951
HpaII CCGG 9 cut(s) 105, 183, 192, 249, 306, 324, 360, 480, 647
HphI GGTGA 2 cut(s) 607, 892
Hpy166II GTNNAC 2 cut(s) 34, 439
Hpy188I TCNGA 3 cut(s) 232, 795, 934
Hpy188III TCNNGA 5 cut(s) 136, 451, 521, 665, 988
Hpy8I GTNNAC 2 cut(s) 34, 439
Hpy99I CGWCG 3 cut(s) 290, 293, 494
HpyAV CCTTC 7 cut(s) 18, 76, 469, 721, 790, 941, 985
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 2 cut(s) 207, 288
HpyCH4V TGCA 2 cut(s) 410, 841
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 114, 319, 557, 647, 779
HpyF3I CTNAG 6 cut(s) 231, 393, 576, 636, 876, 969
HpySE526I ACGT 2 cut(s) 207, 288
Hsp92I GRCGYC 3 cut(s) 99, 207, 288
Hsp92II CATG 5 cut(s) 139, 331, 424, 608, 668
HspAI GCGC 1 cut(s) 99
KasI GGCGCC 1 cut(s) 98
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 6 cut(s) 26, 227, 340, 414, 740, 963
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 281, 770
Lsp1109I GCAGC 3 cut(s) 63, 271, 662
LweI GCATC 4 cut(s) 120, 621, 775, 858
MaeII ACGT 2 cut(s) 207, 288
MaeIII GTNAC 2 cut(s) 428, 511
MalI GATC 6 cut(s) 28, 229, 342, 416, 742, 965
MboI GATC 6 cut(s) 26, 227, 340, 414, 740, 963
MboII GAAGA 4 cut(s) 266, 337, 484, 508
MflI RGATCY 2 cut(s) 26, 227
MhlI GDGCHC 2 cut(s) 315, 975
MluCI AATT 3 cut(s) 294, 655, 959
Mly113I GGCGCC 1 cut(s) 99
MlyI GAGTC 3 cut(s) 48, 909, 945
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 4 cut(s) 354, 567, 582, 804
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 9 cut(s) 105, 183, 192, 249, 306, 324, 360, 480, 647
MspR9I CCNGG 5 cut(s) 125, 192, 324, 481, 647
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 6 cut(s) 105, 114, 319, 557, 647, 779
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 1 cut(s) 99
NciI CCSGG 4 cut(s) 192, 324, 481, 647
NdeII GATC 6 cut(s) 26, 227, 340, 414, 740, 963
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 139, 331, 424, 608, 668
NlaIV GGNNCC 3 cut(s) 100, 187, 283
NmeAIII GCCGAG 2 cut(s) 75, 487
NmuCI GTSAC 1 cut(s) 511
PagI TCATGA 2 cut(s) 135, 664
PceI AGGCCT 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 204
PdiI GCCGGC 1 cut(s) 106
PflMI CCANNNNNTGG 2 cut(s) 124, 596
PkrI GCNGC 8 cut(s) 50, 53, 103, 110, 202, 261, 460, 652
PleI GAGTC 3 cut(s) 47, 908, 945
PluTI GGCGCC 1 cut(s) 102
PpsI GAGTC 3 cut(s) 47, 908, 945
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 100, 187, 283
PspPI GGNCC 1 cut(s) 534
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 26, 227
RsaI GTAC 5 cut(s) 33, 398, 488, 588, 813
RsaNI GTAC 5 cut(s) 32, 397, 487, 587, 812
SacI GAGCTC 1 cut(s) 975
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 354, 567, 582, 804
SatI GCNGC 8 cut(s) 49, 52, 102, 109, 201, 260, 459, 651
Sau3AI GATC 6 cut(s) 26, 227, 340, 414, 740, 963
Sau96I GGNCC 1 cut(s) 534
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 3 cut(s) 48, 909, 945
ScrFI CCNGG 5 cut(s) 125, 192, 324, 481, 647
SduI GDGCHC 2 cut(s) 315, 975
SfaNI GCATC 4 cut(s) 120, 621, 775, 858
SfcI CTRYAG 1 cut(s) 444
SfoI GGCGCC 1 cut(s) 100
SgrAI CRCCGGYG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 3 cut(s) 294, 655, 959
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 9 cut(s) 46, 49, 63, 102, 108, 201, 303, 384, 458
SspDI GGCGCC 1 cut(s) 98
SstI GAGCTC 1 cut(s) 975
StuI AGGCCT 1 cut(s) 7
StyD4I CCNGG 5 cut(s) 123, 190, 322, 479, 645
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 2 cut(s) 210, 291
TaqI TCGA 2 cut(s) 903, 987
TasI AATT 3 cut(s) 294, 655, 959
TatI WGTACW 1 cut(s) 396
TauI GCSGC 5 cut(s) 51, 104, 111, 203, 461
Tru1I TTAA 4 cut(s) 354, 567, 582, 804
Tru9I TTAA 4 cut(s) 354, 567, 582, 804
TscAI CASTG 2 cut(s) 417, 859
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 3 cut(s) 51, 259, 650
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 3 cut(s) 19, 58, 725
TspRI CASTG 2 cut(s) 417, 859
Van91I CCANNNNNTGG 2 cut(s) 124, 596
VspI ATTAAT 1 cut(s) 354
ZraI GACGTC 2 cut(s) 208, 289
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.