Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009634

Physical Location & Seq

Genomic Coordinates Reverse (-)

19954390 .. 19956915

Gene Structure 2526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGATTCTGCTCAGATCAATTCTCAAAAATCAAACTTTGTTTAAGACTCTCTTGAAACCTCAATGCGCGCCTTTGATTGTCTCCAGAAACTTTACATCGGAAGAAGCTTATAAGAAGCCACTCTCTGTTTTCTTCGAAGAGGCTGTTGGATTGAGACCCAAATCAGAAACGAGCGAAATCGAAGAAGAAGAAGAAGAAGGCAACGAGTTGAAGAGAAAGCTTTTGGAATTGGAAAGGAAACTCATAGAACTGAAGAAATCGGAACCTGTGAGAAAGAAAAAACAGAAGGGAGAGGTTGTGATATCAGAGCAAAACGAGAAAAGGCATAATCTTTACAAGTTGTTTAAGGGAGATGAAGAGAAAGAGGTAAAGAAACATAGTAAGGAAAAGGAGGACGTAATTAGGGTTTATAAGGAGCTTCCTATAGAGATGGTGTCGTTTGTGAGGCTTCTGCATAAAGAAGGGTATTTGAACAAGGCTAATTTCATTACTGGAGAAAAGTTGGATATGGGGAATCTTGATGAAGAGTATGCTAGAACTTTTGTTAAGTTTGCTGCCGAAAGATTTGGAAAGGATTACCAGGAGATAGCAAAGTGGTTATCAGGTAGTGACCTGAAGAAGATTGTGCTCTTTGGTTGCCCGAGTTTGGAAAAAAGGGCGGTATTCGCTGCTAAAACATTGCGCAACTTTTTCGATATCCATGAGAATAATGTGTGCGAGAAATGCGTGTTAAAAGAGAAGTGCAAGTTTCCAAACCAGAGTGTATGGGATGGCAAAACAAAGCACTTGCACTTGTCTGTTGTGATGAAAGTCATCACACTATATCCATTAGACTTGACTCATCCGAAGCTACAAGTTCCTCAAGAGGTACAAGACTCAGTTTCAAGATTGCTGACGGAGATTCAGAACCTAAGCCGAACTATCTGTACTCCTCTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

36.51

Weight (kDa)

8.96

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53460
fragaria_vesca	FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000
malus_domestica	MD03G1246100.v1.1 MD11G1267100.v1.1
prunus_persica	Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1
pyrus_communis	pycom03g19510
rosa_chinensis	RchiOBHm_Chr5g0030051
rosa_laevigata	RLG00000033212
rosa_roxburghii	Rroxscaffold_1G00049970
rosa_rugosa	Rorug05G0116600
rosa_samantha	Rh5AG209600 Rh5BG208500 Rh5CG232300 Rh5DG212900
rosa_wichuraiana	Rw5G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 414
Acc16I	TGCGCA	1 cut(s)	686
AccII	CGCG	1 cut(s)	71
AciI	CCGC	1 cut(s)	662
AcuI	CTGAAG	2 cut(s)	275, 638
AfaI	GTAC	2 cut(s)	873, 931
AfiI	CCNNNNNNNGG	1 cut(s)	649
AgsI	TTSAA	4 cut(s)	58, 214, 475, 888
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	4 cut(s)	110, 223, 421, 853
AluI	AGCT	4 cut(s)	110, 223, 421, 853
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	2 cut(s)	88, 151
Ama87I	CYCGRG	1 cut(s)	643
ApeKI	GCWGC	2 cut(s)	557, 671
AspLEI	GCGC	3 cut(s)	71, 73, 687
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	544, 658
BccI	CCATC	2 cut(s)	427, 767
BcgI	CGANNNNNNTGC	2 cut(s)	676, 710
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	2 cut(s)	88, 151
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	2 cut(s)	558, 672
BlsI	GCNGC	2 cut(s)	559, 673
Bme1390I	CCNGG	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	643
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	584
BpmI	CTGGAG	2 cut(s)	70, 516
Bpu10I	CCTNAGC	1 cut(s)	914
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	680
BseBI	CCWGG	1 cut(s)	584
BseGI	GGATG	2 cut(s)	778, 844
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseMI	GCAATG	1 cut(s)	680
BseMII	CTCAG	2 cut(s)	28, 894
BseNI	ACTGG	1 cut(s)	499
BsePI	GCGCGC	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	924
BseXI	GCAGC	2 cut(s)	544, 658
Bsh1236I	CGCG	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	633
BsiHKCI	CYCGRG	1 cut(s)	643
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmAI	GTCTC	2 cut(s)	88, 151
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	643
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	662
BspCNI	CTCAG	2 cut(s)	27, 893
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	499
BssHII	GCGCGC	1 cut(s)	69
BssMI	GATC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	584
Bst6I	CTCTTC	4 cut(s)	135, 209, 354, 522
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	14, 880, 914
BstF5I	GGATG	2 cut(s)	778, 844
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	71, 73, 687
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	2 cut(s)	88, 151
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 726
BstNI	CCWGG	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	544, 658
BtsCI	GGATG	2 cut(s)	778, 844
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	3 cut(s)	71, 73, 687
Csp6I	GTAC	2 cut(s)	872, 930
CviAII	CATG	2 cut(s)	704, 942
CviJI	RGCY	9 cut(s)	110, 121, 146, 223, 421, 451, 482, 853, 918
CviKI_1	RGCY	9 cut(s)	110, 121, 146, 223, 421, 451, 482, 853, 918
CviQI	GTAC	2 cut(s)	872, 930
DdeI	CTNAG	3 cut(s)	14, 880, 914
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	4 cut(s)	135, 209, 354, 522
EarI	CTCTTC	4 cut(s)	135, 209, 354, 522
Eco31I	GGTCTC	1 cut(s)	151
Eco32I	GATATC	2 cut(s)	306, 700
Eco57I	CTGAAG	2 cut(s)	275, 638
Eco88I	CYCGRG	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	582
EcoRV	GATATC	2 cut(s)	306, 700
FaeI	CATG	2 cut(s)	707, 945
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	2 cut(s)	703, 941
Fnu4HI	GCNGC	2 cut(s)	558, 672
FokI	GGATG	2 cut(s)	785, 831
Fsp4HI	GCNGC	2 cut(s)	558, 672
FspBI	CTAG	1 cut(s)	537
FspI	TGCGCA	1 cut(s)	686
GlaI	GCGC	3 cut(s)	70, 72, 686
GluI	GCNGC	2 cut(s)	558, 672
GsuI	CTGGAG	2 cut(s)	70, 516
HhaI	GCGC	3 cut(s)	71, 73, 687
Hin1II	CATG	2 cut(s)	707, 945
Hin6I	GCGC	3 cut(s)	69, 71, 685
HinP1I	GCGC	3 cut(s)	69, 71, 685
HindIII	AAGCTT	2 cut(s)	108, 221
HinfI	GANTC	6 cut(s)	7, 49, 517, 841, 878, 904
Hpy188I	TCNGA	7 cut(s)	17, 103, 169, 265, 310, 849, 909
Hpy188III	TCNNGA	5 cut(s)	55, 87, 521, 866, 888
HpyAV	CCTTC	3 cut(s)	194, 283, 458
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	457, 747, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 726
HpyF3I	CTNAG	3 cut(s)	14, 880, 914
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	2 cut(s)	707, 945
HspAI	GCGC	3 cut(s)	69, 71, 685
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	8 cut(s)	100, 282, 480, 569, 591, 596, 629, 773
Lsp1109I	GCAGC	2 cut(s)	544, 658
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	4 cut(s)	21, 230, 402, 484
MlyI	GAGTC	3 cut(s)	43, 835, 872
MmeI	TCCRAC	2 cut(s)	130, 486
MnlI	CCTC	9 cut(s)	72, 136, 289, 361, 388, 441, 862, 873, 945
MseI	TTAA	4 cut(s)	45, 348, 549, 734
MspR9I	CCNGG	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	668, 726
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	707, 945
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	611
NsbI	TGCGCA	1 cut(s)	686
NspV	TTCGAA	1 cut(s)	138
PauI	GCGCGC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	7, 517, 904
PkrI	GCNGC	2 cut(s)	559, 673
PleI	GAGTC	3 cut(s)	43, 835, 872
PpsI	GAGTC	3 cut(s)	43, 835, 872
PsiI	TTATAA	2 cut(s)	114, 414
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	913, 945
PteI	GCGCGC	1 cut(s)	69
RsaI	GTAC	2 cut(s)	873, 931
RsaNI	GTAC	2 cut(s)	872, 930
SaqAI	TTAA	4 cut(s)	45, 348, 549, 734
SatI	GCNGC	2 cut(s)	558, 672
Sau3AI	GATC	1 cut(s)	17
SchI	GAGTC	3 cut(s)	43, 835, 872
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	633
SfcI	CTRYAG	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
Sse9I	AATT	4 cut(s)	21, 230, 402, 484
SsiI	CCGC	1 cut(s)	662
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	582
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	3 cut(s)	138, 183, 696
TasI	AATT	4 cut(s)	21, 230, 402, 484
TatI	WGTACW	1 cut(s)	929
TfiI	GAWTC	3 cut(s)	7, 517, 904
Tru1I	TTAA	4 cut(s)	45, 348, 549, 734
Tru9I	TTAA	4 cut(s)	45, 348, 549, 734
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	2 cut(s)	557, 671
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	4 cut(s)	372, 478, 540, 824
TspGWI	ACGGA	1 cut(s)	914
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.