Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009634

Physical Location & Seq

Genomic Coordinates Forward (+)

33308608 .. 33320046

Gene Structure 11439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1246100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCTCCCTTCAGAACCGTCCTCCTCCTTAAACCCCAAAACCCTCTTTTCATTTCCCAAACAATCCACAAACCCCTCTCACTCTTCTCCATCGCTCGCAGATTCTTCACCTCCTCACACCAAACTGAGAACCAAACCAAACCCAGAAAGCCTCTGGACCTACTCTTCAAAGAGGCCGTCGAACTCTCCCCAAAACCCGAAAACTCTGACAGAGAAGCCGAAGACAACGCATTGAAGAAGAGCTTGAGGGATTTGGAGAAGGAGGTCAGGAGCTTGCGAGCCAATTCGAATGGCGAAACTAAAGCAAAGAAGAGAGAACCCAATTCTGAGGGTAAGGCCAGTTTATACTCGGTGTTCACGAATAAGGCGGCGGCTGCGGCGGACGGCAGCGGTAGGAAGCGGAAAGAGTTGACGAAAGAGAGGTCGAATATGTTGAAAGATTTGTCGCAGGATATGGAAGTGGTGGTGAGCCATTTGTACAAAGAAGGGTACTTTAAAGATGCCAATTTCTTGTTTGTAAATGGTGATAGGTTGGATTTTAGCTGCTTTAACAACAGTTATGGCCGTAGTTTCGTAAGGTTTGCAGTCGAAAGTTTTGCCAGAGACAACCAACTGATAGCAAAATGGTTGTCTGGCTCAGACTTGAAAAAGGTGGCCCTCCTCGGTTGCCCTTCCCTTGCAAGAAAGAGCGTTTTTGGGGCTAAAAGAATGCGTAAATTTTTTGAAATTCCAGAAGACAAGGTTTGCAGTAAATGTGTCTTGAAACAGTCGTGCAAGTTTGCAAATCAGAATGTGTGGAACGGAGGCGCCAAGAATCTGGATCTTAGAGATGTAATGAATACTATCACATTATATGCTCTGGATGCTGTACCTCCAGAGCTGGTTGTCCCTGACGAAGTAAAGTCTTCTGTTAGTCGACTGCTAAAGGAGGTTTTGAAGCTAAGTGAAGTTACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

36.05

Weight (kDa)

9.59

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53460
fragaria_vesca	FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000
malus_domestica	MD03G1246100.v1.1 MD11G1267100.v1.1
prunus_persica	Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1
pyrus_communis	pycom03g19510
rosa_chinensis	RchiOBHm_Chr5g0030051
rosa_laevigata	RLG00000033212
rosa_roxburghii	Rroxscaffold_1G00049970
rosa_rugosa	Rorug05G0116600
rosa_samantha	Rh5AG209600 Rh5BG208500 Rh5CG232300 Rh5DG212900
rosa_wichuraiana	Rw5G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	916
AciI	CCGC	6 cut(s)	368, 371, 377, 380, 390, 400
AclWI	GGATC	1 cut(s)	828
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	716, 726
AcyI	GRCGYC	1 cut(s)	807
AfaI	GTAC	3 cut(s)	479, 491, 870
AgsI	TTSAA	7 cut(s)	169, 235, 436, 646, 725, 763, 937
AluBI	AGCT	5 cut(s)	243, 273, 543, 880, 940
AluI	AGCT	5 cut(s)	243, 273, 543, 880, 940
Alw26I	GTCTC	2 cut(s)	9, 597
AlwI	GGATC	1 cut(s)	828
AoxI	GGCC	4 cut(s)	174, 336, 562, 654
ApeKI	GCWGC	3 cut(s)	374, 387, 543
ApoI	RAATTY	2 cut(s)	716, 726
ArsI	GACNNNNNNTTYG	6 cut(s)	162, 194, 407, 439, 614, 646
AspLEI	GCGC	1 cut(s)	809
AspS9I	GGNCC	2 cut(s)	157, 655
AsuHPI	GGTGA	3 cut(s)	100, 478, 536
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	806
BbsI	GAAGAC	3 cut(s)	228, 741, 897
BbvI	GCAGC	3 cut(s)	361, 399, 530
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	3 cut(s)	161, 400, 549
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BcoDI	GTCTC	2 cut(s)	9, 597
BfoI	RGCGCY	1 cut(s)	810
BisI	GCNGC	6 cut(s)	369, 372, 375, 378, 388, 544
BlsI	GCNGC	6 cut(s)	370, 373, 376, 379, 389, 545
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	157, 655
BmiI	GGNNCC	1 cut(s)	808
BmsI	GCATC	2 cut(s)	490, 853
BpiI	GAAGAC	3 cut(s)	228, 741, 897
BpmI	CTGGAG	1 cut(s)	858
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	807
BsaJI	CCNNGG	1 cut(s)	661
Bse1I	ACTGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	117, 318, 651
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	3 cut(s)	14, 103, 650
BseXI	GCAGC	3 cut(s)	361, 399, 530
BshFI	GGCC	4 cut(s)	176, 338, 564, 656
BshNI	GGYRCC	1 cut(s)	806
BslFI	GGGAC	1 cut(s)	872
BsmAI	GTCTC	2 cut(s)	9, 597
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	4 cut(s)	176, 338, 564, 656
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	820
BspACI	CCGC	6 cut(s)	368, 371, 377, 380, 390, 400
BspANI	GGCC	4 cut(s)	176, 338, 564, 656
BspCNI	CTCAG	3 cut(s)	118, 319, 650
BspLI	GGNNCC	1 cut(s)	808
BspPI	GGATC	1 cut(s)	828
BspQI	GCTCTTC	1 cut(s)	233
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	1 cut(s)	820
BssNI	GRCGYC	1 cut(s)	807
Bst4CI	ACNGT	3 cut(s)	19, 557, 768
Bst6I	CTCTTC	4 cut(s)	89, 170, 233, 305
BstACI	GRCGYC	1 cut(s)	807
BstAUI	TGTACA	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	97, 275, 279
BstDEI	CTNAG	5 cut(s)	126, 327, 637, 824, 941
BstF5I	GGATG	1 cut(s)	868
BstH2I	RGCGCY	1 cut(s)	810
BstHHI	GCGC	1 cut(s)	809
BstKTI	GATC	1 cut(s)	823
BstMAI	GTCTC	2 cut(s)	9, 597
BstMBI	GATC	1 cut(s)	820
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 377, 863
BstV1I	GCAGC	3 cut(s)	361, 399, 530
BstV2I	GAAGAC	3 cut(s)	228, 741, 897
BstX2I	RGATCY	1 cut(s)	820
BstXI	CCANNNNNNTGG	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	4 cut(s)	176, 338, 564, 656
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	868
Cac8I	GCNNGC	3 cut(s)	97, 275, 279
CfoI	GCGC	1 cut(s)	809
Cfr13I	GGNCC	2 cut(s)	157, 655
Csp6I	GTAC	3 cut(s)	478, 490, 869
CviQI	GTAC	3 cut(s)	478, 490, 869
DdeI	CTNAG	5 cut(s)	126, 327, 637, 824, 941
DinI	GGCGCC	1 cut(s)	808
DpnI	GATC	1 cut(s)	822
DpnII	GATC	1 cut(s)	820
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	4 cut(s)	89, 170, 233, 305
EarI	CTCTTC	4 cut(s)	89, 170, 233, 305
EciI	GGCGGA	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	157
EgeI	GGCGCC	1 cut(s)	808
EheI	GGCGCC	1 cut(s)	808
FaiI	YATR	6 cut(s)	346, 431, 455, 561, 853, 855
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	872
FblI	GTMKAC	1 cut(s)	916
Fnu4HI	GCNGC	6 cut(s)	369, 372, 375, 378, 388, 544
FokI	GGATG	1 cut(s)	875
Fsp4HI	GCNGC	6 cut(s)	369, 372, 375, 378, 388, 544
GlaI	GCGC	1 cut(s)	808
GluI	GCNGC	6 cut(s)	369, 372, 375, 378, 388, 544
GsuI	CTGGAG	1 cut(s)	858
HaeII	RGCGCY	1 cut(s)	810
HaeIII	GGCC	4 cut(s)	176, 338, 564, 656
HhaI	GCGC	1 cut(s)	809
Hin1I	GRCGYC	1 cut(s)	807
Hin6I	GCGC	1 cut(s)	807
HinP1I	GCGC	1 cut(s)	807
HincII	GTYRAC	2 cut(s)	411, 917
HindII	GTYRAC	2 cut(s)	411, 917
HinfI	GANTC	2 cut(s)	102, 814
HphI	GGTGA	3 cut(s)	100, 478, 536
Hpy166II	GTNNAC	3 cut(s)	357, 411, 917
Hpy188I	TCNGA	5 cut(s)	14, 208, 328, 640, 789
Hpy188III	TCNNGA	8 cut(s)	155, 268, 358, 731, 760, 818, 860, 875
Hpy8I	GTNNAC	3 cut(s)	357, 411, 917
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	19, 253, 479, 681
HpyCH4III	ACNGT	3 cut(s)	19, 557, 768
HpyCH4V	TGCA	5 cut(s)	584, 680, 747, 774, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 377, 863
HpyF3I	CTNAG	5 cut(s)	126, 327, 637, 824, 941
Hsp92I	GRCGYC	1 cut(s)	807
HspAI	GCGC	1 cut(s)	807
KasI	GGCGCC	1 cut(s)	806
Kzo9I	GATC	1 cut(s)	820
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	3 cut(s)	361, 399, 530
LweI	GCATC	2 cut(s)	490, 853
MaeIII	GTNAC	1 cut(s)	949
MalI	GATC	1 cut(s)	822
MboI	GATC	1 cut(s)	820
MboII	GAAGA	9 cut(s)	76, 97, 157, 233, 247, 250, 322, 746, 897
MflI	RGATCY	1 cut(s)	820
MluCI	AATT	5 cut(s)	283, 322, 505, 716, 726
Mly113I	GGCGCC	1 cut(s)	807
MmeI	TCCRAC	1 cut(s)	513
MseI	TTAA	3 cut(s)	30, 495, 549
MspA1I	CMGCKG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	714
MwoI	GCNNNNNNNGC	3 cut(s)	374, 377, 863
NarI	GGCGCC	1 cut(s)	807
NdeII	GATC	1 cut(s)	820
NlaIV	GGNNCC	1 cut(s)	808
NspV	TTCGAA	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	356
PctI	GAATGC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	102, 814
PkrI	GCNGC	6 cut(s)	370, 373, 376, 379, 389, 545
PluTI	GGCGCC	1 cut(s)	810
PspN4I	GGNNCC	1 cut(s)	808
PspPI	GGNCC	2 cut(s)	157, 655
PsuI	RGATCY	1 cut(s)	820
RsaI	GTAC	3 cut(s)	479, 491, 870
RsaNI	GTAC	3 cut(s)	478, 490, 869
SalI	GTCGAC	1 cut(s)	915
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	30, 495, 549
SatI	GCNGC	6 cut(s)	369, 372, 375, 378, 388, 544
Sau3AI	GATC	1 cut(s)	820
Sau96I	GGNCC	2 cut(s)	157, 655
SfaNI	GCATC	2 cut(s)	490, 853
SfoI	GGCGCC	1 cut(s)	808
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	5 cut(s)	283, 322, 505, 716, 726
SsiI	CCGC	6 cut(s)	368, 371, 377, 380, 390, 400
SspDI	GGCGCC	1 cut(s)	806
TaaI	ACNGT	3 cut(s)	19, 557, 768
TaqI	TCGA	5 cut(s)	180, 287, 425, 588, 916
TasI	AATT	5 cut(s)	283, 322, 505, 716, 726
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	3 cut(s)	371, 374, 380
TfiI	GAWTC	2 cut(s)	102, 814
Tru1I	TTAA	3 cut(s)	30, 495, 549
Tru9I	TTAA	3 cut(s)	30, 495, 549
TseI	GCWGC	3 cut(s)	374, 387, 543
TspDTI	ATGAA	2 cut(s)	40, 851
TspGWI	ACGGA	1 cut(s)	816
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	716, 726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.