Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009634

Physical Location & Seq

Genomic Coordinates Reverse (-)

9097847 .. 9101352

Gene Structure 3506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTCCCTTCAGAACCCTCCTTTCCCACCACCACTCCTACTCTCTCCTTAAACCCCAAAACCCTCTTTCCATTTCCCAAATAACCCGCAAACCTTTCTCATTCTCCTCCATCTTCCAGAGATTCTATAGCTCACACCAGACTGAAAACCAAACCAAACCCAGAAAGCCTTTAGACCTTCTCTTCAAAGAGGCCGTAGAACTATCACCAAAACCCGAAAACTCCGAAAGCGAAGGTGAAACCGAAGACAGCCCATTGAAGAAGGGCTCGAGGGAGTTGGAGAAAGAAGTAAAGAGCTTGAAATCGAATTCGAATGGCGAAAACAAAGCGAAGAAGAGTGAAGTCGAACCTAAGAATTCTAAGGGTGAAACCGAAGACAGCCCATTGAAGAAGGGCTTGAGGGAGTTGGAGAAAGAGGTAAAGAGCTTGAAATCGAATTCGAATGGCGAAAACAAAGCGAAGAAGAGTGCAATCGAACCCAAGAATTCTAAGGCTATGGTCAGCTTGTACGAAGTGTTCACAAACAAGGCGGCGGCGGGGGATGAAAGGAAGTGGAAAGAGTTGACAAGAGAGAGATCAAATGTGTTTAAGGCTTTGTCGCAGGATATGGAAGTGGTTGTGAGCCATTTGTACAAAGAAGGGTACTTTAAAGATGCCAATTTCTTGTCTGTGAATGATGGTAGGTTGGATTTTAGTTGCTTTAACAATAGCTATGGCCGCGGTTTTGTGAAGTTTGCGGTGGAGAGGTTTGCCAAAGACAACCAAGTGATTGCAAAATGGTTGTCAGGCTCTGACTTGAAAAAGGTGGCCCTTGTTGGTTGTCCTTCCCTTGCAAGAAAGAGTGTTTTCGGTGCTAAAAGATTGCGTAAATTTTTTGATATTCAAGAACATACTGTTTGTAGCAAATGTGTCTTAAAACAATCATGCAACTTTGTGAATCAGAATGTGTGGAATAGAGGCGCCAAGAATTTGGATCTGGCTGATGTTATGAATACTGTCACTTTATATGCTCTGGATGCTGCGCCTCCACAGCTGGTTGTGTCTGATGAAGTAAAGTCTTCTGTTAGTCGATTGCTCAAGGAGGTGTTGAGGCTAAGTAAAACCACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

41.73

Weight (kDa)

9.52

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53460
fragaria_vesca	FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000
malus_domestica	MD03G1246100.v1.1 MD11G1267100.v1.1
prunus_persica	Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1
pyrus_communis	pycom03g19510
rosa_chinensis	RchiOBHm_Chr5g0030051
rosa_laevigata	RLG00000033212
rosa_roxburghii	Rroxscaffold_1G00049970
rosa_rugosa	Rorug05G0116600
rosa_samantha	Rh5AG209600 Rh5BG208500 Rh5CG232300 Rh5DG212900
rosa_wichuraiana	Rw5G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	959
AccII	CGCG	1 cut(s)	720
AciI	CCGC	7 cut(s)	88, 530, 533, 536, 718, 720, 737
AclWI	GGATC	1 cut(s)	981
AcoI	YGGCCR	1 cut(s)	715
AcsI	RAATTY	6 cut(s)	307, 355, 436, 484, 869, 967
AcyI	GRCGYC	1 cut(s)	960
AfaI	GTAC	3 cut(s)	509, 632, 644
AgsI	TTSAA	7 cut(s)	187, 259, 301, 388, 430, 799, 884
AluBI	AGCT	6 cut(s)	132, 297, 426, 504, 711, 1033
AluI	AGCT	6 cut(s)	132, 297, 426, 504, 711, 1033
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	981
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	3 cut(s)	192, 715, 807
ApeKI	GCWGC	1 cut(s)	1019
ApoI	RAATTY	6 cut(s)	307, 355, 436, 484, 869, 967
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
AspLEI	GCGC	2 cut(s)	962, 1024
AspS9I	GGNCC	1 cut(s)	808
AsuHPI	GGTGA	3 cut(s)	198, 248, 377
AsuII	TTCGAA	2 cut(s)	311, 440
AvaI	CYCGRG	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	959
BanII	GRGCYC	1 cut(s)	269
BarI	GAAGNNNNNNTAC	1 cut(s)	1090
BbsI	GAAGAC	3 cut(s)	252, 381, 1050
BbvI	GCAGC	1 cut(s)	1006
BccI	CCATC	2 cut(s)	119, 671
BceAI	ACGGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	963
BisI	GCNGC	4 cut(s)	531, 534, 718, 1020
BlsI	GCNGC	4 cut(s)	532, 535, 719, 1021
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	808
BmiI	GGNNCC	1 cut(s)	961
BmsI	GCATC	2 cut(s)	643, 1006
BpiI	GAAGAC	3 cut(s)	252, 381, 1050
Bpu14I	TTCGAA	2 cut(s)	311, 440
BpuEI	CTTGAG	2 cut(s)	418, 1061
BsaHI	GRCGYC	1 cut(s)	960
BsaJI	CCNNGG	1 cut(s)	718
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	2 cut(s)	547, 1021
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	1006
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	3 cut(s)	194, 717, 809
BshNI	GGYRCC	1 cut(s)	959
BsiHKCI	CYCGRG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	3 cut(s)	194, 717, 809
BsoBI	CYCGRG	1 cut(s)	268
Bsp119I	TTCGAA	2 cut(s)	311, 440
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	575, 973
BspACI	CCGC	7 cut(s)	88, 530, 533, 536, 718, 720, 737
BspANI	GGCC	3 cut(s)	194, 717, 809
BspFNI	CGCG	1 cut(s)	720
BspHI	TCATGA	1 cut(s)	1109
BspLI	GGNNCC	1 cut(s)	961
BspPI	GGATC	1 cut(s)	981
BspT104I	TTCGAA	2 cut(s)	311, 440
BspT107I	GGYRCC	1 cut(s)	959
BsrGI	TGTACA	1 cut(s)	630
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	2 cut(s)	575, 973
BssNI	GRCGYC	1 cut(s)	960
Bst4CI	ACNGT	2 cut(s)	895, 997
Bst6I	CTCTTC	3 cut(s)	188, 329, 458
BstACI	GRCGYC	1 cut(s)	960
BstAUI	TGTACA	1 cut(s)	630
BstBI	TTCGAA	2 cut(s)	311, 440
BstDEI	CTNAG	4 cut(s)	351, 360, 489, 1094
BstDSI	CCRYGG	1 cut(s)	718
BstF5I	GGATG	2 cut(s)	547, 1021
BstFNI	CGCG	1 cut(s)	720
BstH2I	RGCGCY	1 cut(s)	963
BstHHI	GCGC	2 cut(s)	962, 1024
BstKTI	GATC	2 cut(s)	578, 976
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	575, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	717, 1016, 1030
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	1 cut(s)	1006
BstV2I	GAAGAC	3 cut(s)	252, 381, 1050
BstX2I	RGATCY	1 cut(s)	973
BstXI	CCANNNNNNTGG	1 cut(s)	970
BstYI	RGATCY	1 cut(s)	973
BsuRI	GGCC	3 cut(s)	194, 717, 809
BtgI	CCRYGG	1 cut(s)	718
BtsCI	GGATG	2 cut(s)	547, 1021
CaiI	CAGNNNCTG	1 cut(s)	791
CciI	TCATGA	1 cut(s)	1109
CfoI	GCGC	2 cut(s)	962, 1024
Cfr13I	GGNCC	1 cut(s)	808
Cfr42I	CCGCGG	1 cut(s)	721
Csp6I	GTAC	3 cut(s)	508, 631, 643
CviAII	CATG	2 cut(s)	924, 1110
CviQI	GTAC	3 cut(s)	508, 631, 643
DdeI	CTNAG	4 cut(s)	351, 360, 489, 1094
DinI	GGCGCC	1 cut(s)	961
DpnI	GATC	2 cut(s)	577, 975
DpnII	GATC	2 cut(s)	575, 973
DraI	TTTAAA	1 cut(s)	649
EaeI	YGGCCR	1 cut(s)	715
Eam1104I	CTCTTC	3 cut(s)	188, 329, 458
EarI	CTCTTC	3 cut(s)	188, 329, 458
Eco24I	GRGCYC	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	268
EcoRI	GAATTC	4 cut(s)	307, 355, 436, 484
EcoT38I	GRGCYC	1 cut(s)	269
EgeI	GGCGCC	1 cut(s)	961
EheI	GGCGCC	1 cut(s)	961
FaeI	CATG	2 cut(s)	927, 1113
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	2 cut(s)	923, 1109
FauI	CCCGC	2 cut(s)	95, 529
Fnu4HI	GCNGC	4 cut(s)	531, 534, 718, 1020
FokI	GGATG	2 cut(s)	554, 1028
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	4 cut(s)	531, 534, 718, 1020
GlaI	GCGC	2 cut(s)	961, 1023
GluI	GCNGC	4 cut(s)	531, 534, 718, 1020
HaeII	RGCGCY	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	194, 717, 809
HhaI	GCGC	2 cut(s)	962, 1024
Hin1I	GRCGYC	1 cut(s)	960
Hin1II	CATG	2 cut(s)	927, 1113
Hin6I	GCGC	2 cut(s)	960, 1022
HinP1I	GCGC	2 cut(s)	960, 1022
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	2 cut(s)	123, 937
HphI	GGTGA	3 cut(s)	198, 248, 377
Hpy166II	GTNNAC	2 cut(s)	519, 564
Hpy188I	TCNGA	5 cut(s)	14, 226, 793, 942, 1045
Hpy188III	TCNNGA	4 cut(s)	118, 884, 1013, 1110
Hpy8I	GTNNAC	2 cut(s)	519, 564
HpyAV	CCTTC	7 cut(s)	19, 188, 227, 256, 385, 632, 834
HpyCH4III	ACNGT	2 cut(s)	895, 997
HpyCH4V	TGCA	4 cut(s)	470, 773, 833, 927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	717, 1016, 1030
HpyF3I	CTNAG	4 cut(s)	351, 360, 489, 1094
Hsp92I	GRCGYC	1 cut(s)	960
Hsp92II	CATG	2 cut(s)	927, 1113
HspAI	GCGC	2 cut(s)	960, 1022
KasI	GGCGCC	1 cut(s)	959
KspI	CCGCGG	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	575, 973
LpnPI	CCDG	8 cut(s)	131, 152, 175, 587, 771, 962, 998, 1019
Lsp1109I	GCAGC	1 cut(s)	1006
LweI	GCATC	2 cut(s)	643, 1006
MaeIII	GTNAC	1 cut(s)	997
MalI	GATC	2 cut(s)	577, 975
MboI	GATC	2 cut(s)	575, 973
MflI	RGATCY	1 cut(s)	973
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	7 cut(s)	307, 355, 436, 484, 658, 869, 967
Mly113I	GGCGCC	1 cut(s)	960
MmeI	TCCRAC	3 cut(s)	258, 387, 666
MseI	TTAA	5 cut(s)	51, 588, 648, 702, 914
MspA1I	CMGCKG	2 cut(s)	720, 1033
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	3 cut(s)	717, 1016, 1030
NarI	GGCGCC	1 cut(s)	960
NdeII	GATC	2 cut(s)	575, 973
NlaIII	CATG	2 cut(s)	927, 1113
NlaIV	GGNNCC	1 cut(s)	961
NmuCI	GTSAC	1 cut(s)	997
NspV	TTCGAA	2 cut(s)	311, 440
PaeR7I	CTCGAG	1 cut(s)	268
PagI	TCATGA	1 cut(s)	1109
PfeI	GAWTC	2 cut(s)	123, 937
PkrI	GCNGC	4 cut(s)	532, 535, 719, 1021
PluTI	GGCGCC	1 cut(s)	963
PspN4I	GGNNCC	1 cut(s)	961
PspPI	GGNCC	1 cut(s)	808
PspXI	VCTCGAGB	1 cut(s)	268
PsrI	GAACNNNNNNTAC	2 cut(s)	500, 532
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	973
PvuII	CAGCTG	1 cut(s)	1033
RsaI	GTAC	3 cut(s)	509, 632, 644
RsaNI	GTAC	3 cut(s)	508, 631, 643
SacII	CCGCGG	1 cut(s)	721
SaqAI	TTAA	5 cut(s)	51, 588, 648, 702, 914
SatI	GCNGC	4 cut(s)	531, 534, 718, 1020
Sau3AI	GATC	2 cut(s)	575, 973
Sau96I	GGNCC	1 cut(s)	808
SduI	GDGCHC	1 cut(s)	269
SfaNI	GCATC	2 cut(s)	643, 1006
SfcI	CTRYAG	1 cut(s)	127
SfoI	GGCGCC	1 cut(s)	961
Sfr274I	CTCGAG	1 cut(s)	268
Sfr303I	CCGCGG	1 cut(s)	721
SfuI	TTCGAA	2 cut(s)	311, 440
SgrBI	CCGCGG	1 cut(s)	721
SlaI	CTCGAG	1 cut(s)	268
SmlI	CTYRAG	3 cut(s)	268, 397, 1076
SmoI	CTYRAG	3 cut(s)	268, 397, 1076
Sse9I	AATT	7 cut(s)	307, 355, 436, 484, 658, 869, 967
SsiI	CCGC	7 cut(s)	88, 530, 533, 536, 718, 720, 737
SspDI	GGCGCC	1 cut(s)	959
TaaI	ACNGT	2 cut(s)	895, 997
TaqI	TCGA	8 cut(s)	269, 305, 311, 345, 434, 440, 474, 1069
TasI	AATT	7 cut(s)	307, 355, 436, 484, 658, 869, 967
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	3 cut(s)	533, 536, 720
TfiI	GAWTC	2 cut(s)	123, 937
Tru1I	TTAA	5 cut(s)	51, 588, 648, 702, 914
Tru9I	TTAA	5 cut(s)	51, 588, 648, 702, 914
TseFI	GTSAC	1 cut(s)	997
TseI	GCWGC	1 cut(s)	1019
Tsp45I	GTSAC	1 cut(s)	997
TspDTI	ATGAA	4 cut(s)	558, 1004, 1062, 1098
XapI	RAATTY	6 cut(s)	307, 355, 436, 484, 869, 967
XhoI	CTCGAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.