Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009634

Physical Location & Seq

Genomic Coordinates Reverse (-)

10333346 .. 10334785

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGGAAAATTTTCCGGGGGATATCGGGGAATAAAATCAGGTCCGAATCTCAATCACTAGAGTCATGCCACGTACATAAACCGACCTGGATCGTGACGAAATCCTGCCCTAAACGTATTTATACAATCTATTGCTCTCTTTTAATCCCAGGCCGCTATATGGTGATACTGGTTGATCTCGATCTCGACGAGATAGTCCTCGATAGCAGTTTGGCTCATGGTAGTAAGGCCGAAGAACCAGAGGCTGCTTATTTCCCTAGAAAAAGAGAGATTACAAAGACGAGGAGTAAGCCAAAACCTTATGTACCAAAGGGATTTGACATGCTTCCTATGTACATTTTTAAGACGAAGGATGGTGAATACTATGAAGGGCCTGCTGTTAGAGCTGGTCCCATTGTTTGTTTTCGTTGTCACAAGCATGGTGACCATTGGTCTGATACGTGCCCAGAAAATGCTTCTGCTTTGGAATCAAGGGTTACAGCTGCTGTCACTAGCAAGAATACATATGATGCTGTTGAGAGAACACAAACTGAATCGGTCGAGACAGAATCTGATCCTGTTGAGAGAACACAAGCTGAACCGGTCGAGGCAGAATCTGATCCTATCGAGAGAACAGAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.33

Weight (kDa)

5.91

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53460
fragaria_vesca	FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000
malus_domestica	MD03G1246100.v1.1 MD11G1267100.v1.1
prunus_persica	Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1
pyrus_communis	pycom03g19510
rosa_chinensis	RchiOBHm_Chr5g0030051
rosa_laevigata	RLG00000033212
rosa_roxburghii	Rroxscaffold_1G00049970
rosa_rugosa	Rorug05G0116600
rosa_samantha	Rh5AG209600 Rh5BG208500 Rh5CG232300 Rh5DG212900
rosa_wichuraiana	Rw5G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	3 cut(s)	98, 548, 593
AcsI	RAATTY	1 cut(s)	9
AfaI	GTAC	3 cut(s)	75, 306, 335
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgeI	ACCGGT	1 cut(s)	580
AhdI	GACNNNNNGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	86, 148
AluBI	AGCT	3 cut(s)	386, 482, 575
AluI	AGCT	3 cut(s)	386, 482, 575
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	3 cut(s)	98, 548, 593
AlwNI	CAGNNNCTG	4 cut(s)	245, 485, 551, 596
AoxI	GGCC	3 cut(s)	151, 228, 371
ApeKI	GCWGC	2 cut(s)	245, 482
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	1 cut(s)	580
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	42, 371, 389
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	175, 368, 434
AvaII	GGWCC	2 cut(s)	42, 389
BaeGI	GKGCMC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	232, 469
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	2 cut(s)	88, 150
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	3 cut(s)	59, 258, 492
BisI	GCNGC	3 cut(s)	154, 246, 483
BlsI	GCNGC	3 cut(s)	155, 247, 484
Bme1390I	CCNGG	3 cut(s)	17, 88, 150
Bme18I	GGWCC	2 cut(s)	42, 389
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgT120I	GGNCC	3 cut(s)	42, 371, 389
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	3 cut(s)	17, 88, 150
BmsI	GCATC	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	17
BsaAI	YACGTR	2 cut(s)	73, 441
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	16, 148
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	88, 150
BseDI	CCNNGG	2 cut(s)	16, 148
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	232, 469
Bsh1285I	CGRYCG	2 cut(s)	540, 585
BshFI	GGCC	3 cut(s)	153, 230, 373
BshTI	ACCGGT	1 cut(s)	580
BsiEI	CGRYCG	2 cut(s)	540, 585
BsiSI	CCGG	2 cut(s)	16, 581
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	3 cut(s)	153, 230, 373
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	90, 175, 181, 553, 598
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	3 cut(s)	153, 230, 373
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	3 cut(s)	98, 548, 593
BsrFI	RCCGGY	1 cut(s)	580
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	2 cut(s)	16, 148
BssMI	GATC	5 cut(s)	90, 175, 181, 553, 598
Bst2UI	CCWGG	2 cut(s)	88, 150
BstAUI	TGTACA	1 cut(s)	333
BstBAI	YACGTR	2 cut(s)	73, 441
BstC8I	GCNNGC	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	5 cut(s)	93, 178, 184, 556, 601
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	5 cut(s)	90, 175, 181, 553, 598
BstMCI	CGRYCG	2 cut(s)	540, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	2 cut(s)	88, 150
BstNSI	RCATGY	1 cut(s)	325
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	15, 86, 148
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	232, 469
BsuRI	GGCC	3 cut(s)	153, 230, 373
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	4 cut(s)	245, 485, 551, 596
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	3 cut(s)	42, 371, 389
Csp6I	GTAC	3 cut(s)	74, 305, 334
CspAI	ACCGGT	1 cut(s)	580
CviAII	CATG	4 cut(s)	66, 218, 322, 419
CviJI	RGCY	9 cut(s)	153, 215, 230, 245, 292, 373, 386, 482, 575
CviKI_1	RGCY	9 cut(s)	153, 215, 230, 245, 292, 373, 386, 482, 575
CviQI	GTAC	3 cut(s)	74, 305, 334
DpnI	GATC	5 cut(s)	92, 177, 183, 555, 600
DpnII	GATC	5 cut(s)	90, 175, 181, 553, 598
DrdI	GACNNNNNNGTC	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1105I	GACNNNNNGTC	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	42, 389
Eco91I	GGTNACC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	86, 148
EcoRV	GATATC	1 cut(s)	24
FaeI	CATG	4 cut(s)	69, 221, 325, 422
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	65, 217, 321, 418
FauNDI	CATATG	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	154, 246, 483
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	154, 246, 483
FspBI	CTAG	3 cut(s)	59, 258, 492
GluI	GCNGC	3 cut(s)	154, 246, 483
HaeIII	GGCC	3 cut(s)	153, 230, 373
HapII	CCGG	2 cut(s)	16, 581
Hin1II	CATG	4 cut(s)	69, 221, 325, 422
HinfI	GANTC	7 cut(s)	47, 62, 467, 533, 548, 593, 617
HpaII	CCGG	2 cut(s)	16, 581
HphI	GGTGA	3 cut(s)	175, 368, 434
Hpy188I	TCNGA	4 cut(s)	46, 436, 553, 598
Hpy188III	TCNNGA	6 cut(s)	94, 179, 185, 541, 607, 621
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	343, 362
HpyCH4IV	ACGT	3 cut(s)	72, 115, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpySE526I	ACGT	3 cut(s)	72, 115, 440
Hsp92II	CATG	4 cut(s)	69, 221, 325, 422
Kzo9I	GATC	5 cut(s)	90, 175, 181, 553, 598
Lsp1109I	GCAGC	2 cut(s)	232, 469
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	3 cut(s)	59, 258, 492
MaeII	ACGT	3 cut(s)	72, 115, 440
MaeIII	GTNAC	5 cut(s)	94, 410, 422, 475, 487
MalI	GATC	5 cut(s)	92, 177, 183, 555, 600
MboI	GATC	5 cut(s)	90, 175, 181, 553, 598
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	209, 235, 276, 580
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	143, 342
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	2 cut(s)	16, 581
MspR9I	CCNGG	3 cut(s)	17, 88, 150
MvaI	CCWGG	2 cut(s)	88, 150
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	5 cut(s)	90, 175, 181, 553, 598
NlaIII	CATG	4 cut(s)	69, 221, 325, 422
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	4 cut(s)	94, 410, 422, 487
NspI	RCATGY	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	6 cut(s)	47, 467, 533, 548, 593, 617
PinAI	ACCGGT	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	155, 247, 484
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	2 cut(s)	73, 441
Psp6I	CCWGG	2 cut(s)	86, 148
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	86, 148
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	3 cut(s)	42, 371, 389
PstNI	CAGNNNCTG	4 cut(s)	245, 485, 551, 596
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	75, 306, 335
RsaNI	GTAC	3 cut(s)	74, 305, 334
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	143, 342
SatI	GCNGC	3 cut(s)	154, 246, 483
Sau3AI	GATC	5 cut(s)	90, 175, 181, 553, 598
Sau96I	GGNCC	3 cut(s)	42, 371, 389
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	17, 88, 150
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	9 cut(s)	44, 75, 89, 118, 301, 388, 443, 484, 577
SfaNI	GCATC	1 cut(s)	499
SinI	GGWCC	2 cut(s)	42, 389
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	3 cut(s)	59, 258, 492
StyD4I	CCNGG	3 cut(s)	15, 86, 148
TaiI	ACGT	3 cut(s)	75, 118, 443
TaqI	TCGA	6 cut(s)	180, 186, 201, 540, 585, 606
TaqII	GACCGA	1 cut(s)	526
TasI	AATT	1 cut(s)	9
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	6 cut(s)	47, 467, 533, 548, 593, 617
Tru1I	TTAA	2 cut(s)	143, 342
Tru9I	TTAA	2 cut(s)	143, 342
TseFI	GTSAC	4 cut(s)	94, 410, 422, 487
TseI	GCWGC	2 cut(s)	245, 482
Tsp45I	GTSAC	4 cut(s)	94, 410, 422, 487
TspDTI	ATGAA	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	42, 389
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	3 cut(s)	59, 258, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.