Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009634

Physical Location & Seq

Genomic Coordinates Reverse (-)

24740153 .. 24743902

Gene Structure 3750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG209600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCTCTCTTCAGAACCCTCCTTTCCCACTCCTCTCTCCTTAAACCCCAAAACCCTCTCTTCATTTCCCAAACAACCCACCAACCTCTCTCATTCTCCTCCATCTCCCTCAGAACCCTTTCCTCACTCGAACCCAAAAACCAAACCAAAGCCATAAAGCCTCTAGAACTTGTTTTCAAAAAGGCCGTCGGACTTTCCCCAGAACCCGAAACCTCCGATACCGAGACCGACGATGACCCACTGAAACAGAGCCTAAGAGAGCTAGAACAAGAGCTCAAGGGCGTGAAATCGAATCCGAATGTCGCCCAAATCGAACCGAGGAGAAGAGAAACCCAGAATTCCAAGGCTGACAGAGAACAACCCAAGAATCCAAAGAAAGGGATCAGCTTATACGCAGTGTTTACGAATAAGACGGTGGATGGTGAAACGGGGAACGAGATGACCAGAGAGAGGTCGGACGTGTATAAAGAGTTGTCGCCGGAAATGGAGTTGGTGGTGAGTTATTTGTATAAAGAAGGCTACTTTTCGAATGCCAATTTCTTGTCTTTGTATGAGGATAGGTTGGATTTTAGTTGCTTTGATAATAGCTATGGCCGCGGGTTTATTAAGTATGCTGTGGAGAAGTTTGCCAATGACAAGCAGCAAATTGCAAAATGGTTATCAGGGAGCGACCTGAAAAAGGTGGCTCTCTTTGGTTGTCCTTCGCTTGCAAAAAAGAGTGTTTTTGGTGCTAAAAGATTGCGCAAATTCTTTGCAATTCCAGAAGAAACTGTGAGCCAATTGTCCTATCTTACTATTTCTCTTCCTCTCACTGAATTTTTTTTTTTTTTAAACATATTGTATAAATTTGATGTCTTGTGTTTTTGGTACCTTTCAGGTTTGTTCAAAATGTGTCTTAAGAGAATCATGCAGGTTTGTGAACAAGAGTGTGTGGCGTGGAGCCACAAAGAATTTGAATCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

36.9

Weight (kDa)

8.36

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53460
fragaria_vesca	FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000
malus_domestica	MD03G1246100.v1.1 MD11G1267100.v1.1
prunus_persica	Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1
pyrus_communis	pycom03g19510
rosa_chinensis	RchiOBHm_Chr5g0030051
rosa_laevigata	RLG00000033212
rosa_roxburghii	Rroxscaffold_1G00049970
rosa_rugosa	Rorug05G0116600
rosa_samantha	Rh5AG209600 Rh5BG208500 Rh5CG232300 Rh5DG212900
rosa_wichuraiana	Rw5G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	901
Acc65I	GGTACC	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	867
AccII	CGCG	1 cut(s)	597
AciI	CCGC	2 cut(s)	595, 597
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	5 cut(s)	337, 746, 815, 845, 950
AfaI	GTAC	1 cut(s)	869
AfiI	CCNNNNNNNGG	3 cut(s)	377, 450, 679
AflII	CTTAAG	1 cut(s)	896
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	178, 886, 956
AjiI	CACGTC	1 cut(s)	460
AluBI	AGCT	4 cut(s)	262, 274, 387, 588
AluI	AGCT	4 cut(s)	262, 274, 387, 588
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	2 cut(s)	9, 218
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	2 cut(s)	183, 592
ApeKI	GCWGC	1 cut(s)	640
ApoI	RAATTY	5 cut(s)	337, 746, 815, 845, 950
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	1 cut(s)	118
Asp718I	GGTACC	1 cut(s)	867
AspLEI	GCGC	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	434, 508
AsuII	TTCGAA	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	867
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	2 cut(s)	110, 413
BceAI	ACGGC	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	9, 218
BfaI	CTAG	2 cut(s)	164, 263
BfrI	CTTAAG	1 cut(s)	896
BfuAI	ACCTGC	1 cut(s)	901
BisI	GCNGC	2 cut(s)	595, 641
BlsI	GCNGC	2 cut(s)	596, 642
BmgBI	CACGTC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	869, 941
Bpu14I	TTCGAA	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	317, 342, 595
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 450, 679
BseDI	CCNNGG	3 cut(s)	317, 342, 595
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	377, 450, 679
BseMII	CTCAG	1 cut(s)	124
BseRI	GAGGAG	3 cut(s)	22, 88, 334
BseXI	GCAGC	1 cut(s)	652
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	185, 594
BshNI	GGYRCC	1 cut(s)	867
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	479
BslI	CCNNNNNNNGG	3 cut(s)	377, 450, 679
BsmAI	GTCTC	2 cut(s)	9, 218
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	185, 594
Bso31I	GGTCTC	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	2 cut(s)	595, 597
BspANI	GGCC	2 cut(s)	185, 594
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	2 cut(s)	869, 941
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	1 cut(s)	389
BspT104I	TTCGAA	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	867
BspTI	CTTAAG	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	317, 342, 595
BssMI	GATC	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	415, 772
Bst6I	CTCTTC	4 cut(s)	14, 65, 319, 807
BstAFI	CTTAAG	1 cut(s)	896
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	2 cut(s)	110, 254
BstDSI	CCRYGG	1 cut(s)	595
BstENI	CCTNNNNNAGG	1 cut(s)	677
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	2 cut(s)	9, 218
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	594
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	1 cut(s)	652
BsuRI	GGCC	2 cut(s)	185, 594
BtgI	CCRYGG	1 cut(s)	595
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	239, 402, 810
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	1 cut(s)	708
CfoI	GCGC	1 cut(s)	744
Cfr42I	CCGCGG	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	868
CviAII	CATG	1 cut(s)	907
CviQI	GTAC	1 cut(s)	868
DdeI	CTNAG	2 cut(s)	110, 254
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
DraI	TTTAAA	1 cut(s)	831
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	4 cut(s)	14, 65, 319, 807
EarI	CTCTTC	4 cut(s)	14, 65, 319, 807
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	677
EcoRI	GAATTC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	910
FatI	CATG	1 cut(s)	906
FauI	CCCGC	1 cut(s)	590
Fnu4HI	GCNGC	2 cut(s)	595, 641
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	595, 641
FspBI	CTAG	2 cut(s)	164, 263
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	2 cut(s)	595, 641
HaeIII	GGCC	2 cut(s)	185, 594
HapII	CCGG	1 cut(s)	479
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	1 cut(s)	910
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	4 cut(s)	292, 367, 903, 956
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	2 cut(s)	434, 508
Hpy166II	GTNNAC	2 cut(s)	402, 920
Hpy188I	TCNGA	7 cut(s)	14, 113, 191, 217, 297, 457, 961
Hpy188III	TCNNGA	2 cut(s)	164, 761
Hpy8I	GTNNAC	2 cut(s)	402, 920
Hpy99I	CGWCG	2 cut(s)	191, 233
HpyAV	CCTTC	2 cut(s)	509, 711
HpyCH4III	ACNGT	2 cut(s)	415, 772
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	4 cut(s)	650, 710, 755, 910
HpyF10VI	GCNNNNNNNGC	1 cut(s)	594
HpyF3I	CTNAG	2 cut(s)	110, 254
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	910
HspAI	GCGC	1 cut(s)	742
KpnI	GGTACC	1 cut(s)	871
KspI	CCGCGG	1 cut(s)	598
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	666, 939
LpnPI	CCDG	9 cut(s)	213, 347, 457, 492, 648, 686, 774, 861, 896
Lsp1109I	GCAGC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	164, 263
MaeII	ACGT	1 cut(s)	459
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	4 cut(s)	52, 336, 776, 794
MfeI	CAATTG	1 cut(s)	779
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	9 cut(s)	337, 535, 645, 746, 756, 779, 815, 845, 950
MmeI	TCCRAC	3 cut(s)	169, 435, 543
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	4 cut(s)	42, 606, 830, 897
MspA1I	CMGCKG	1 cut(s)	597
MspCI	CTTAAG	1 cut(s)	896
MspI	CCGG	1 cut(s)	479
MunI	CAATTG	1 cut(s)	779
Mva1269I	GAATGC	1 cut(s)	535
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	594
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	1 cut(s)	910
NlaIV	GGNNCC	2 cut(s)	869, 941
NsbI	TGCGCA	1 cut(s)	743
NspV	TTCGAA	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	292, 367, 903, 956
PkrI	GCNGC	2 cut(s)	596, 642
Psp124BI	GAGCTC	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	869, 941
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
SacI	GAGCTC	1 cut(s)	276
SacII	CCGCGG	1 cut(s)	598
SaqAI	TTAA	4 cut(s)	42, 606, 830, 897
SatI	GCNGC	2 cut(s)	595, 641
Sau3AI	GATC	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	276
Sfr303I	CCGCGG	1 cut(s)	598
SfuI	TTCGAA	1 cut(s)	527
SgrBI	CCGCGG	1 cut(s)	598
SmlI	CTYRAG	2 cut(s)	275, 896
SmoI	CTYRAG	2 cut(s)	275, 896
Sse9I	AATT	9 cut(s)	337, 535, 645, 746, 756, 779, 815, 845, 950
SsiI	CCGC	2 cut(s)	595, 597
SspMI	CTAG	2 cut(s)	164, 263
SstI	GAGCTC	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	415, 772
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	4 cut(s)	129, 290, 312, 527
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	9 cut(s)	337, 535, 645, 746, 756, 779, 815, 845, 950
TauI	GCSGC	1 cut(s)	597
TfiI	GAWTC	4 cut(s)	292, 367, 903, 956
Tru1I	TTAA	4 cut(s)	42, 606, 830, 897
Tru9I	TTAA	4 cut(s)	42, 606, 830, 897
TscAI	CASTG	3 cut(s)	246, 402, 817
TseI	GCWGC	1 cut(s)	640
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	3 cut(s)	246, 402, 817
Vha464I	CTTAAG	1 cut(s)	896
XagI	CCTNNNNNAGG	1 cut(s)	677
XapI	RAATTY	5 cut(s)	337, 746, 815, 845, 950
XbaI	TCTAGA	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	2 cut(s)	164, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.