Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009634

Physical Location & Seq

Genomic Coordinates Reverse (-)

11450454 .. 11453988

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18000.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTCTCTCTACAGAACCCTCCTCTCCCACTCCTCTCTCCTTAGACCCCAAACCCCCCACCAACCTCTCTCGTTCTCCTCCATCTTCCTCAGAACCCTTTCCTCACTCGAACCCAAAAACCACACCAAACCCAGAAAGCCACTAGTCCTCGTTTTCAAAGAGGCCGTCGGACTCTCCCCAAAACCCGAAACCTCCGACACCGAAACCGACGACGACCCACTGAAACAAAGCCTCAGGGAGCACGAACGAGAGCTCAAGACCTTGAAACCGAATCCGAATGTTGCCCAAATCGAACCCAGGAGAAGAGAACCCAAGAATTCAAAGGGTCGGATCAGCTTGTACGCCGTGTTTACGAATAAGAAGGTGGAAGTTGAAACGGGAAAGGAGAGTAGCAGAGAGTGGTCGAAGGTGTACAAGGAGTTGTCGCCGGAAATGGAGTTGGTGGTGAGCCATTTGTATAAAGAAGGCTACTTTTCGGATGCGAATTTTGTGTGTTTGTATGAGGATAGGTTGGATTTTAGCTGCTTTGATAGTGCTTATGGCCGTGGGTTTATTAAGCATGCTGTGGAGAAGTTTGCCAATGACAAGCAGGAAATTGCAAAATGGTTATCAGGGCGCGACTTGAAAAAGGTGGCTCTCTTTGGTTGTCCTTCGCTAGCCAAAAAGAGTGTTTTCGGTGCTAAGAGATTGCGCAAATTCTTTGAAATTCCAGAAGAAACTGTTTGTTCAAAATGTGTCTTAAGAGAATCGTGCAAGTTTGTGAACAAGAGTGTGTGGCGTGGACACCCAAATAATTTGAATCCAACTAATGTGGGGAAAGCAAACCCCAAGAATTTAAATCTGGCTGATGTTATGAATACTATCACGTTATATGCTTTGGAATCTGTGCATCCGCAGCTAGTTGTGCCGGAGGATGTAACGTCTTCTGTTAGTCGATTGCTAAAGGAGATTTTGAAGCTAAGTCAAACTTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

37.01

Weight (kDa)

9.33

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53460
fragaria_vesca	FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000 FvH4_3g18000
malus_domestica	MD03G1246100.v1.1 MD11G1267100.v1.1
prunus_persica	Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1 Prupe.4G158600_v2.0.a1
pyrus_communis	pycom03g19510
rosa_chinensis	RchiOBHm_Chr5g0030051
rosa_laevigata	RLG00000033212
rosa_roxburghii	Rroxscaffold_1G00049970
rosa_rugosa	Rorug05G0116600
rosa_samantha	Rh5AG209600 Rh5BG208500 Rh5CG232300 Rh5DG212900
rosa_wichuraiana	Rw5G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	692
AccII	CGCG	1 cut(s)	618
AciI	CCGC	1 cut(s)	893
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	5 cut(s)	316, 484, 695, 705, 832
AfaI	GTAC	2 cut(s)	341, 413
AflII	CTTAAG	1 cut(s)	739
AgsI	TTSAA	9 cut(s)	157, 265, 321, 374, 625, 704, 729, 799, 955
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	5 cut(s)	253, 336, 522, 898, 958
AluI	AGCT	5 cut(s)	253, 336, 522, 898, 958
Alw21I	GWGCWC	2 cut(s)	243, 255
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	162, 541
ApeKI	GCWGC	2 cut(s)	522, 895
ApoI	RAATTY	5 cut(s)	316, 484, 695, 705, 832
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp700I	GAANNNNTTC	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	618, 693
AsuHPI	GGTGA	1 cut(s)	457
AsuNHI	GCTAGC	1 cut(s)	655
AxyI	CCTNAGG	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	915
Bbv12I	GWGCWC	2 cut(s)	243, 255
BbvI	GCAGC	2 cut(s)	509, 907
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	3 cut(s)	149, 329, 528
BciT130I	CCWGG	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	3 cut(s)	143, 656, 899
BfmI	CTRYAG	1 cut(s)	10
BfrI	CTTAAG	1 cut(s)	739
BisI	GCNGC	2 cut(s)	523, 896
BlsI	GCNGC	2 cut(s)	524, 897
Bme1390I	CCNGG	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	2 cut(s)	469, 898
BmtI	GCTAGC	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	296, 544
Bse21I	CCTNAGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	296, 544
BseGI	GGATG	3 cut(s)	484, 889, 919
BseMII	CTCAG	2 cut(s)	103, 247
BseRI	GAGGAG	3 cut(s)	11, 22, 67
BseXI	GCAGC	2 cut(s)	509, 907
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	2 cut(s)	164, 543
BsiHKAI	GWGCWC	2 cut(s)	243, 255
BsiSI	CCGG	2 cut(s)	428, 908
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	164, 543
Bsp1286I	GDGCHC	2 cut(s)	243, 255
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	893
BspANI	GGCC	2 cut(s)	164, 543
BspCNI	CTCAG	2 cut(s)	102, 246
BspFNI	CGCG	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	974
BspOI	GCTAGC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	338
BspTI	CTTAAG	1 cut(s)	739
BsrGI	TGTACA	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	296, 544
BssMI	GATC	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	1 cut(s)	298
BstAFI	CTTAAG	1 cut(s)	739
BstAUI	TGTACA	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	561, 657
BstDEI	CTNAG	5 cut(s)	41, 89, 233, 681, 959
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	484, 889, 919
BstFNI	CGCG	1 cut(s)	618
BstHHI	GCGC	2 cut(s)	618, 693
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	895, 904
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	509, 907
BstV2I	GAAGAC	1 cut(s)	915
Bsu36I	CCTNAGG	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	164, 543
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	484, 889, 919
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	561, 657
CciI	TCATGA	1 cut(s)	974
CfoI	GCGC	2 cut(s)	618, 693
Csp6I	GTAC	2 cut(s)	340, 412
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	2 cut(s)	560, 975
CviQI	GTAC	2 cut(s)	340, 412
DdeI	CTNAG	5 cut(s)	41, 89, 233, 681, 959
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DraI	TTTAAA	1 cut(s)	837
EaeI	YGGCCR	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
Eco81I	CCTNAGG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	2 cut(s)	563, 978
FaiI	YATR	8 cut(s)	459, 501, 540, 561, 854, 871, 873, 976
FalI	AAGNNNNNCTT	1 cut(s)	952
FatI	CATG	2 cut(s)	559, 974
Fnu4HI	GCNGC	2 cut(s)	523, 896
FokI	GGATG	3 cut(s)	491, 876, 926
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	523, 896
FspBI	CTAG	3 cut(s)	143, 656, 899
FspI	TGCGCA	1 cut(s)	692
GlaI	GCGC	2 cut(s)	617, 692
GluI	GCNGC	2 cut(s)	523, 896
HaeIII	GGCC	2 cut(s)	164, 543
HapII	CCGG	2 cut(s)	428, 908
HhaI	GCGC	2 cut(s)	618, 693
Hin1II	CATG	2 cut(s)	563, 978
Hin6I	GCGC	2 cut(s)	616, 691
HinP1I	GCGC	2 cut(s)	616, 691
HinfI	GANTC	5 cut(s)	171, 271, 746, 799, 881
HpaII	CCGG	2 cut(s)	428, 908
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	4 cut(s)	351, 412, 763, 782
Hpy188I	TCNGA	6 cut(s)	92, 170, 196, 276, 330, 478
Hpy188III	TCNNGA	3 cut(s)	256, 710, 975
Hpy8I	GTNNAC	4 cut(s)	351, 412, 763, 782
Hpy99I	CGWCG	3 cut(s)	170, 212, 215
HpyAV	CCTTC	4 cut(s)	355, 400, 458, 660
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	866, 920
HpyCH4V	TGCA	3 cut(s)	599, 753, 889
HpyF10VI	GCNNNNNNNGC	2 cut(s)	895, 904
HpyF3I	CTNAG	5 cut(s)	41, 89, 233, 681, 959
HpySE526I	ACGT	2 cut(s)	866, 920
Hsp92II	CATG	2 cut(s)	563, 978
HspAI	GCGC	2 cut(s)	616, 691
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	2 cut(s)	509, 907
LweI	GCATC	2 cut(s)	469, 898
MaeI	CTAG	3 cut(s)	143, 656, 899
MaeII	ACGT	2 cut(s)	866, 920
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	4 cut(s)	76, 315, 725, 915
MhlI	GDGCHC	2 cut(s)	243, 255
MluCI	AATT	7 cut(s)	316, 484, 594, 695, 705, 793, 832
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	5 cut(s)	148, 219, 308, 492, 827
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	3 cut(s)	555, 740, 836
MspCI	CTTAAG	1 cut(s)	739
MspI	CCGG	2 cut(s)	428, 908
MspR9I	CCNGG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	895, 904
NdeII	GATC	1 cut(s)	330
NheI	GCTAGC	1 cut(s)	655
NlaIII	CATG	2 cut(s)	563, 978
NsbI	TGCGCA	1 cut(s)	692
NspI	RCATGY	1 cut(s)	563
PaeI	GCATGC	1 cut(s)	563
PagI	TCATGA	1 cut(s)	974
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	4 cut(s)	271, 746, 799, 881
PkrI	GCNGC	2 cut(s)	524, 897
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	341, 413
RsaNI	GTAC	2 cut(s)	340, 412
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	555, 740, 836
SatI	GCNGC	2 cut(s)	523, 896
Sau3AI	GATC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	243, 255
SfaNI	GCATC	2 cut(s)	469, 898
SfcI	CTRYAG	1 cut(s)	10
SmiI	ATTTAAAT	1 cut(s)	837
SmlI	CTYRAG	2 cut(s)	254, 739
SmoI	CTYRAG	2 cut(s)	254, 739
SpeI	ACTAGT	1 cut(s)	142
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	7 cut(s)	316, 484, 594, 695, 705, 793, 832
SsiI	CCGC	1 cut(s)	893
SspMI	CTAG	3 cut(s)	143, 656, 899
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	296
SwaI	ATTTAAAT	1 cut(s)	837
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	869, 923
TaqI	TCGA	4 cut(s)	108, 291, 404, 934
TasI	AATT	7 cut(s)	316, 484, 594, 695, 705, 793, 832
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	4 cut(s)	271, 746, 799, 881
Tru1I	TTAA	3 cut(s)	555, 740, 836
Tru9I	TTAA	3 cut(s)	555, 740, 836
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	2 cut(s)	522, 895
TspDTI	ATGAA	2 cut(s)	869, 963
TspRI	CASTG	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	739
XapI	RAATTY	5 cut(s)	316, 484, 695, 705, 832
XceI	RCATGY	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	3 cut(s)	143, 656, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.