Rh5DG212900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009634
Physical Location & Seq
Reverse (-)
23873632 .. 23876191
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG212900.1

Sequence Viewer

Length: 1032 bp
ATGTCTCTCTTCAGAAGCCTCCTTTCCCACTCCTCTCTCCTTAAACCCCAAAACCCTCTCTTCATTTCCCAAACAACCCACCACCCTCTCTCATTCTCCTCCATCTTCCTCAGAACCCTTTCCTCACTCGAACCCAAAAACCAAACCAAACCCAGAAAGCCTCTGGACCTTGTTTTCAAAAAGGCCGTCGGACTTTCCCCAGAACCCGAAACCTCCGATACCGAGACCGACGACGACCCACTGAAACAGAGCCTAAGAGAGCTAGAACAAGAGCTCAAGGGCGTGAAATCGAATCCGAATGTCGCCCAAATCGAACCGAGGAGAAGAGAAACCCAGAATTCCAAGGCTGACAGAGAACAACCCAAGAATCCAAAGAAAGGGATCAGCTTATACGCAGTGTTTACGAATAAGACGGTGGATGGTGAAACGGGGAACGAGATGACCAGAGAAAGGTCGGACGTGTGTAAAGAGTTGTCGCCGGAAATGGAGTTGGTGGTGAGTTATTTGTATAAAGAAGGCTACTTTTCGAATGCCAATTTCTTGTCTTTGTATGAGGATAGGTTGGATTTTAGTTGCTTTGATAATAGCTATGGCCGCGGGTTTATTAAGTATGCTGTGGAGAAGTTTGCCAATGACAAGCAGCAAATTGCAAAATGGTTATCAGGGAGCGACTTGAAAAAGGTGGCTCTCTTTGGTTGTCCTTCACTTGCAAAAAAGAGTGTTTTTGGTGCTAAAAGATTGCGCAAATTCTTTGAAATTCCAGAAGAAACTGTTTGTTCAAAATGTGTCTTAAGAGAATCGTGCAGGTTTGTGAACAAGAGTGTGTGGCGTGGAGCCACAAAGAATTTGAATCCAACTAATAATGTGGGGAAAGGAAACCCCAAGAATTTGAACCTGGCTGATGTTATGAATATTATCATGCTATATGCTTTGGAATCTGTGCCTCCGCAGCTGGTTGTGCCAGATCATTTAAAGGCTTCTGTTAGTCGATTGCTAAAGGAGATTTTGAAGCTAAGTCAAACTACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

38.79

Weight (kDa)

9.3

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 743
Acc36I ACCTGC 1 cut(s) 795
AccII CGCG 1 cut(s) 597
AciI CCGC 3 cut(s) 595, 597, 947
AclWI GGATC 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 5 cut(s) 337, 746, 756, 844, 886
AfiI CCNNNNNNNGG 2 cut(s) 377, 450
AflII CTTAAG 1 cut(s) 790
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 7 cut(s) 178, 676, 755, 780, 850, 892, 1009
AjiI CACGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 894
AluBI AGCT 6 cut(s) 262, 274, 387, 588, 952, 1012
AluI AGCT 6 cut(s) 262, 274, 387, 588, 952, 1012
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 9, 218
AlwI GGATC 1 cut(s) 389
AoxI GGCC 2 cut(s) 183, 592
ApeKI GCWGC 2 cut(s) 640, 949
ApoI RAATTY 5 cut(s) 337, 746, 756, 844, 886
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 744
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 434, 508
AsuII TTCGAA 1 cut(s) 527
AvaII GGWCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 652, 961
BccI CCATC 2 cut(s) 110, 413
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 896
BcoDI GTCTC 2 cut(s) 9, 218
BfaI CTAG 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 790
BfuAI ACCTGC 1 cut(s) 795
BisI GCNGC 3 cut(s) 595, 641, 950
BlsI GCNGC 3 cut(s) 596, 642, 951
Bme1390I CCNGG 1 cut(s) 896
Bme18I GGWCC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 835
BmrFI CCNGG 1 cut(s) 896
Bpu14I TTCGAA 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 317, 342, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 450
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 317, 342, 595
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 2 cut(s) 377, 450
BseMII CTCAG 1 cut(s) 124
BseRI GAGGAG 3 cut(s) 22, 88, 334
BseXI GCAGC 2 cut(s) 652, 961
BsgI GTGCAG 1 cut(s) 823
Bsh1236I CGCG 1 cut(s) 597
BshFI GGCC 2 cut(s) 185, 594
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 479
BslI CCNNNNNNNGG 2 cut(s) 377, 450
BsmAI GTCTC 2 cut(s) 9, 218
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 2 cut(s) 185, 594
Bso31I GGTCTC 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 2 cut(s) 381, 964
BspACI CCGC 3 cut(s) 595, 597, 947
BspANI GGCC 2 cut(s) 185, 594
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 597
BspHI TCATGA 1 cut(s) 1028
BspLI GGNNCC 1 cut(s) 835
BspMI ACCTGC 1 cut(s) 795
BspPI GGATC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 527
BspTI CTTAAG 1 cut(s) 790
BspTNI GGTCTC 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 317, 342, 595
BssMI GATC 2 cut(s) 381, 964
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 2 cut(s) 415, 772
Bst6I CTCTTC 3 cut(s) 14, 65, 319
BstAFI CTTAAG 1 cut(s) 790
BstBI TTCGAA 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 110, 254, 1013
BstDSI CCRYGG 1 cut(s) 595
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 1 cut(s) 597
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 2 cut(s) 384, 967
BstMAI GTCTC 2 cut(s) 9, 218
BstMBI GATC 2 cut(s) 381, 964
BstMWI GCNNNNNNNGC 3 cut(s) 594, 949, 958
BstNI CCWGG 1 cut(s) 896
BstSCI CCNGG 1 cut(s) 894
BstUI CGCG 1 cut(s) 597
BstV1I GCAGC 2 cut(s) 652, 961
BsuRI GGCC 2 cut(s) 185, 594
BtgI CCRYGG 1 cut(s) 595
BtrI CACGTC 1 cut(s) 460
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 239, 402
BveI ACCTGC 1 cut(s) 795
CciI TCATGA 1 cut(s) 1028
CfoI GCGC 1 cut(s) 744
Cfr13I GGNCC 1 cut(s) 166
Cfr42I CCGCGG 1 cut(s) 598
CviAII CATG 2 cut(s) 919, 1029
DdeI CTNAG 3 cut(s) 110, 254, 1013
DpnI GATC 2 cut(s) 383, 966
DpnII GATC 2 cut(s) 381, 964
DraI TTTAAA 1 cut(s) 972
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 3 cut(s) 14, 65, 319
EarI CTCTTC 3 cut(s) 14, 65, 319
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 894
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 922, 1032
FatI CATG 2 cut(s) 918, 1028
FauI CCCGC 1 cut(s) 590
Fnu4HI GCNGC 3 cut(s) 595, 641, 950
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 595, 641, 950
FspBI CTAG 1 cut(s) 263
FspI TGCGCA 1 cut(s) 743
GlaI GCGC 1 cut(s) 743
GluI GCNGC 3 cut(s) 595, 641, 950
HaeIII GGCC 2 cut(s) 185, 594
HapII CCGG 1 cut(s) 479
HhaI GCGC 1 cut(s) 744
Hin1II CATG 2 cut(s) 922, 1032
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HinfI GANTC 5 cut(s) 292, 367, 797, 850, 935
HpaII CCGG 1 cut(s) 479
HphI GGTGA 2 cut(s) 434, 508
Hpy166II GTNNAC 2 cut(s) 402, 814
Hpy188I TCNGA 6 cut(s) 14, 113, 191, 217, 297, 457
Hpy188III TCNNGA 3 cut(s) 164, 761, 1029
Hpy8I GTNNAC 2 cut(s) 402, 814
Hpy99I CGWCG 3 cut(s) 191, 233, 236
HpyAV CCTTC 2 cut(s) 509, 711
HpyCH4III ACNGT 2 cut(s) 415, 772
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 3 cut(s) 650, 710, 804
HpyF10VI GCNNNNNNNGC 3 cut(s) 594, 949, 958
HpyF3I CTNAG 3 cut(s) 110, 254, 1013
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 2 cut(s) 922, 1032
HspAI GCGC 1 cut(s) 742
KspI CCGCGG 1 cut(s) 598
Kzo9I GATC 2 cut(s) 381, 964
LmnI GCTCC 2 cut(s) 666, 833
Lsp1109I GCAGC 2 cut(s) 652, 961
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 459
MalI GATC 2 cut(s) 383, 966
MboI GATC 2 cut(s) 381, 964
MboII GAAGA 4 cut(s) 52, 97, 336, 776
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 7 cut(s) 337, 535, 645, 746, 756, 844, 886
MmeI TCCRAC 4 cut(s) 169, 435, 543, 878
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 4 cut(s) 42, 606, 791, 971
MspA1I CMGCKG 2 cut(s) 597, 952
MspCI CTTAAG 1 cut(s) 790
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 896
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 1 cut(s) 896
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 3 cut(s) 594, 949, 958
NdeII GATC 2 cut(s) 381, 964
NlaIII CATG 2 cut(s) 922, 1032
NlaIV GGNNCC 1 cut(s) 835
NsbI TGCGCA 1 cut(s) 743
NspV TTCGAA 1 cut(s) 527
PagI TCATGA 1 cut(s) 1028
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 5 cut(s) 292, 367, 797, 850, 935
PkrI GCNGC 3 cut(s) 596, 642, 951
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 894
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 1 cut(s) 835
PspPI GGNCC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 952
SacI GAGCTC 1 cut(s) 276
SacII CCGCGG 1 cut(s) 598
SaqAI TTAA 4 cut(s) 42, 606, 791, 971
SatI GCNGC 3 cut(s) 595, 641, 950
Sau3AI GATC 2 cut(s) 381, 964
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 896
SduI GDGCHC 1 cut(s) 276
Sfr303I CCGCGG 1 cut(s) 598
SfuI TTCGAA 1 cut(s) 527
SgrBI CCGCGG 1 cut(s) 598
SinI GGWCC 1 cut(s) 166
SmlI CTYRAG 2 cut(s) 275, 790
SmoI CTYRAG 2 cut(s) 275, 790
Sse9I AATT 7 cut(s) 337, 535, 645, 746, 756, 844, 886
SsiI CCGC 3 cut(s) 595, 597, 947
SspI AATATT 1 cut(s) 913
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 894
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 415, 772
TaiI ACGT 1 cut(s) 462
TaqI TCGA 5 cut(s) 129, 290, 312, 527, 988
TaqII GACCGA 1 cut(s) 242
TasI AATT 7 cut(s) 337, 535, 645, 746, 756, 844, 886
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 5 cut(s) 292, 367, 797, 850, 935
Tru1I TTAA 4 cut(s) 42, 606, 791, 971
Tru9I TTAA 4 cut(s) 42, 606, 791, 971
TscAI CASTG 2 cut(s) 246, 402
TseI GCWGC 2 cut(s) 640, 949
TspDTI ATGAA 3 cut(s) 52, 923, 1017
TspRI CASTG 2 cut(s) 246, 402
Vha464I CTTAAG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 5 cut(s) 337, 746, 756, 844, 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.