RLG00000033212

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009634
Physical Location & Seq
Reverse (-)
24506840 .. 24509596
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033212

Sequence Viewer

Length: 1155 bp
ATGTCTCCCTTCAGAACCCTCCTTTCCCACTCCTCTCTCCTTAAACCCCAAAACCCTCTCTTCATTTCCCAAACAACCCACCAACCTCTCTCATTCTCCTCCATCTTCCTCAGAACCCTTTCCTCACTCGAACCCAAAAACCAAACCAAACCTAGAAAGCCTCTTGACCTTGTTTTCAAAAAGGCCGTCGGACTTTCCCCAGAACCCGAAACCTCCGATACCGAAACCGACGACGACCCACTGAAACAGAGCCTAAGAGAGCTAGAACAAGAGCTCAAGGGCGTGAAATCGAATCCGAATGTCGCCCAAATCGAACCCAGGAGAAGAGAAACCCAGAATTCCAAGGCTGACAGAGAACAACCCAAGAATCCAAAGAAAGGGATCAGCTTATACGCAGTGTTTACGAATAAGACGGTGGACGGTGAAACGGGGAAGGAGATGACCAGAGAGAGGTCGGACGTGTGTAAAGAGTTGTCGCCGGAAATGGAGTTGGTGGTGAGCTATTTGTATAAAGAAGGCTACTTTTCGAATGCCAATTTCTTGTCTTTGTATGATGATAGGTTGGATTTTAGTTGCTTTGATAATAGCTATGGCCGCGGGTTTATTAAGCATGCTGTGGAGAAGTTTGCCAATGACAAGCAGCAAATTGCAAAATGGTTATCAGGGAGCAACTTGAAAAAGGTGGCTCTCTTTGGTTGTCCTTCGCTTGCAAAAAAGAGTGTTTTTGGTGCTAAAAGATTGCGCAAATTCTTTGAAATTCCAGAAGAAACTGTTTGTTCAAAATGCGTCTTAAGAGAATCATGCAGGTTTGTGAACAAGAGTGTGTGGCGTGGAGCCACAAAGAATTTGTATCCAACTAATAATGTAGGGAAAGGAAACCCCAAGAATTTGAACCTGGCTGATGTTTTGAATACTATCGCGTTATATGCTTTGGAATCTGTGCCTCAGCAGCTGGTTGTGCCAGATGATTTAAAGGCTTCTGTTAGTCGGTTGCTAAAGGAGATTTTGAAGCTAAGTCAAATGAGGGTGCAGGTCTGCGGGATTGAAAGAACTGAACCAATTTGGGTAAAGTTTTTACCAACTGGATTGAGCGTGCAAAAGTCCGGGAATTTGGTTTATAGATGTCATATTTGTTGCTCTATCTGCTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

43.38

Weight (kDa)

9.3

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 743
Acc36I ACCTGC 2 cut(s) 795, 1021
AccII CGCG 2 cut(s) 597, 920
AciI CCGC 3 cut(s) 595, 597, 1038
AclWI GGATC 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 6 cut(s) 337, 746, 756, 844, 886, 1108
AfiI CCNNNNNNNGG 2 cut(s) 377, 450
AflII CTTAAG 1 cut(s) 790
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 8 cut(s) 178, 676, 755, 780, 892, 910, 1009, 1046
AjiI CACGTC 1 cut(s) 460
AjnI CCWGG 2 cut(s) 317, 894
AluBI AGCT 7 cut(s) 262, 274, 387, 501, 588, 952, 1012
AluI AGCT 7 cut(s) 262, 274, 387, 501, 588, 952, 1012
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 389
AlwNI CAGNNNCTG 1 cut(s) 952
AoxI GGCC 2 cut(s) 183, 592
ApeKI GCWGC 2 cut(s) 640, 949
ApoI RAATTY 6 cut(s) 337, 746, 756, 844, 886, 1108
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 744
AsuC2I CCSGG 1 cut(s) 1105
AsuHPI GGTGA 2 cut(s) 434, 508
AsuII TTCGAA 1 cut(s) 527
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 945
BbvI GCAGC 2 cut(s) 652, 961
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 319, 896
BciVI GTATCC 1 cut(s) 861
BcnI CCSGG 1 cut(s) 1105
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 153, 263
BfrI CTTAAG 1 cut(s) 790
BfuAI ACCTGC 2 cut(s) 795, 1021
BfuI GTATCC 1 cut(s) 861
BisI GCNGC 3 cut(s) 595, 641, 950
BlsI GCNGC 3 cut(s) 596, 642, 951
Bme1390I CCNGG 3 cut(s) 319, 896, 1105
BmgBI CACGTC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 835
BmrFI CCNGG 3 cut(s) 319, 896, 1105
Bpu10I CCTNAGC 1 cut(s) 945
Bpu14I TTCGAA 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 1105
BsaJI CCNNGG 3 cut(s) 317, 342, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 450
Bse1I ACTGG 1 cut(s) 1087
BseBI CCWGG 2 cut(s) 319, 896
BseDI CCNNGG 3 cut(s) 317, 342, 595
BseLI CCNNNNNNNGG 2 cut(s) 377, 450
BseMII CTCAG 2 cut(s) 124, 959
BseNI ACTGG 1 cut(s) 1087
BseRI GAGGAG 2 cut(s) 22, 88
BseXI GCAGC 2 cut(s) 652, 961
BsgI GTGCAG 1 cut(s) 1049
Bsh1236I CGCG 2 cut(s) 597, 920
BshFI GGCC 2 cut(s) 185, 594
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 479, 1104
BslI CCNNNNNNNGG 2 cut(s) 377, 450
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 2 cut(s) 185, 594
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 381
BspACI CCGC 3 cut(s) 595, 597, 1038
BspANI GGCC 2 cut(s) 185, 594
BspCNI CTCAG 2 cut(s) 123, 958
BspFNI CGCG 2 cut(s) 597, 920
BspLI GGNNCC 1 cut(s) 835
BspMI ACCTGC 2 cut(s) 795, 1021
BspPI GGATC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 527
BspTI CTTAAG 1 cut(s) 790
BsrI ACTGG 1 cut(s) 1087
BssECI CCNNGG 3 cut(s) 317, 342, 595
BssMI GATC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 319, 896
Bst4CI ACNGT 3 cut(s) 415, 422, 772
Bst6I CTCTTC 2 cut(s) 65, 319
BstAFI CTTAAG 1 cut(s) 790
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 612, 708, 1094
BstDEI CTNAG 4 cut(s) 110, 254, 945, 1013
BstDSI CCRYGG 1 cut(s) 595
BstFNI CGCG 2 cut(s) 597, 920
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 5 cut(s) 594, 926, 949, 958, 1143
BstNI CCWGG 2 cut(s) 319, 896
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 3 cut(s) 317, 894, 1103
BstUI CGCG 2 cut(s) 597, 920
BstV1I GCAGC 2 cut(s) 652, 961
BsuI GTATCC 1 cut(s) 861
BsuRI GGCC 2 cut(s) 185, 594
BtgI CCRYGG 1 cut(s) 595
BtrI CACGTC 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 239, 402
BveI ACCTGC 2 cut(s) 795, 1021
Cac8I GCNNGC 3 cut(s) 612, 708, 1094
CaiI CAGNNNCTG 1 cut(s) 952
CfoI GCGC 1 cut(s) 744
Cfr42I CCGCGG 1 cut(s) 598
CseI GACGC 1 cut(s) 775
CviAII CATG 2 cut(s) 611, 801
DdeI CTNAG 4 cut(s) 110, 254, 945, 1013
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
DraI TTTAAA 1 cut(s) 972
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 2 cut(s) 65, 319
EarI CTCTTC 2 cut(s) 65, 319
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 2 cut(s) 317, 894
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 614, 804
FatI CATG 2 cut(s) 610, 800
FauI CCCGC 2 cut(s) 590, 1031
Fnu4HI GCNGC 3 cut(s) 595, 641, 950
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 595, 641, 950
FspBI CTAG 2 cut(s) 153, 263
FspI TGCGCA 1 cut(s) 743
GlaI GCGC 1 cut(s) 743
GluI GCNGC 3 cut(s) 595, 641, 950
HaeIII GGCC 2 cut(s) 185, 594
HapII CCGG 2 cut(s) 479, 1104
HgaI GACGC 1 cut(s) 775
HhaI GCGC 1 cut(s) 744
Hin1II CATG 2 cut(s) 614, 804
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HinfI GANTC 4 cut(s) 292, 367, 797, 935
HpaII CCGG 2 cut(s) 479, 1104
HphI GGTGA 2 cut(s) 434, 508
Hpy166II GTNNAC 3 cut(s) 402, 418, 814
Hpy188I TCNGA 6 cut(s) 14, 113, 191, 217, 297, 457
Hpy188III TCNNGA 3 cut(s) 164, 761, 1152
Hpy8I GTNNAC 3 cut(s) 402, 418, 814
Hpy99I CGWCG 3 cut(s) 191, 233, 236
HpyAV CCTTC 4 cut(s) 19, 427, 509, 711
HpyCH4III ACNGT 3 cut(s) 415, 422, 772
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 5 cut(s) 650, 710, 804, 1030, 1096
HpyF10VI GCNNNNNNNGC 5 cut(s) 594, 926, 949, 958, 1143
HpyF3I CTNAG 4 cut(s) 110, 254, 945, 1013
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 2 cut(s) 614, 804
HspAI GCGC 1 cut(s) 742
KspI CCGCGG 1 cut(s) 598
Kzo9I GATC 1 cut(s) 381
LmnI GCTCC 2 cut(s) 666, 833
Lsp1109I GCAGC 2 cut(s) 652, 961
MaeI CTAG 2 cut(s) 153, 263
MaeII ACGT 1 cut(s) 459
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 4 cut(s) 52, 97, 336, 776
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 9 cut(s) 337, 535, 645, 746, 756, 844, 886, 1059, 1108
MmeI TCCRAC 4 cut(s) 169, 435, 543, 878
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 4 cut(s) 42, 606, 791, 971
MspA1I CMGCKG 2 cut(s) 597, 952
MspCI CTTAAG 1 cut(s) 790
MspI CCGG 2 cut(s) 479, 1104
MspR9I CCNGG 3 cut(s) 319, 896, 1105
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 2 cut(s) 319, 896
MvnI CGCG 2 cut(s) 597, 920
MwoI GCNNNNNNNGC 5 cut(s) 594, 926, 949, 958, 1143
NciI CCSGG 1 cut(s) 1105
NdeII GATC 1 cut(s) 381
NlaIII CATG 2 cut(s) 614, 804
NlaIV GGNNCC 1 cut(s) 835
NsbI TGCGCA 1 cut(s) 743
NspI RCATGY 1 cut(s) 614
NspV TTCGAA 1 cut(s) 527
PaeI GCATGC 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 4 cut(s) 292, 367, 797, 935
PfoI TCCNGGA 1 cut(s) 1103
PkrI GCNGC 3 cut(s) 596, 642, 951
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 317, 894
PspGI CCWGG 2 cut(s) 317, 894
PspN4I GGNNCC 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 952
PvuII CAGCTG 1 cut(s) 952
SacI GAGCTC 1 cut(s) 276
SacII CCGCGG 1 cut(s) 598
SaqAI TTAA 4 cut(s) 42, 606, 791, 971
SatI GCNGC 3 cut(s) 595, 641, 950
Sau3AI GATC 1 cut(s) 381
ScrFI CCNGG 3 cut(s) 319, 896, 1105
SduI GDGCHC 1 cut(s) 276
Sfr303I CCGCGG 1 cut(s) 598
SfuI TTCGAA 1 cut(s) 527
SgrBI CCGCGG 1 cut(s) 598
SmlI CTYRAG 2 cut(s) 275, 790
SmoI CTYRAG 2 cut(s) 275, 790
SphI GCATGC 1 cut(s) 614
Sse9I AATT 9 cut(s) 337, 535, 645, 746, 756, 844, 886, 1059, 1108
SsiI CCGC 3 cut(s) 595, 597, 1038
SspMI CTAG 2 cut(s) 153, 263
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 3 cut(s) 317, 894, 1103
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 3 cut(s) 415, 422, 772
TaiI ACGT 1 cut(s) 462
TaqI TCGA 4 cut(s) 129, 290, 312, 527
TasI AATT 9 cut(s) 337, 535, 645, 746, 756, 844, 886, 1059, 1108
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 4 cut(s) 292, 367, 797, 935
Tru1I TTAA 4 cut(s) 42, 606, 791, 971
Tru9I TTAA 4 cut(s) 42, 606, 791, 971
TscAI CASTG 2 cut(s) 246, 402
TseI GCWGC 2 cut(s) 640, 949
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 2 cut(s) 246, 402
Vha464I CTTAAG 1 cut(s) 790
XapI RAATTY 6 cut(s) 337, 746, 756, 844, 886, 1108
XceI RCATGY 1 cut(s) 614
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 2 cut(s) 153, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.