Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006573

Physical Location & Seq

Genomic Coordinates Forward (+)

20115874 .. 20118434

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTGGAGAGAATCGGCTTCGTTTATCCTCGATAAGCATCAGAACAACAAACCCATTTCTCTAACTCATTCAATTGATTCTCCTCCACCACCATCTGCTTCAATGGCGGATGAAAACCCTAACCCTAATCCTATTTCGGCTTATTACCAAACCAGAGCGGCGCATCATGGAATTGTGACTAGCGAGTGGTTGGAGCAGGCTCAAGCCGCGGTTCGACGTTACCCTGATCGTGATTCCTTAGTTTCGGGAAGACCCTTTAGCGTGATTGAGGACTTTAATAGTTGGAGACAGCAACCTGATTTGGCGGAGGCTGTTGCGGCGATTCGTGCTCTTGCGGCTGTTATTAGGGCTAGTGAAGCTACTACTATGATGGAACTTGAAATTGAACTCAAGAAAGCTTCTGATACTCTGAAATCATGGGACACAACGTCGATATCCTTAACAGCGGGATGTGATCTATTCATGCGCTATGTGACTCGAACATCTGCTTTAGAATTTGAGGACTTCAACTCTGCGAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCCCGAACGATAATTGCAATGCTTAGTCAAGATTTCATATTTGATGGGTGTACTATTCTGGTCCATGGTTTCTCCAGAGTTGTGTTTGAAATACTAAAGACATCAGCGCAAAACAAGAAACTCTTTCGAGTGTTGTGCACAGAGGGAAGGCCAGATAAAACAGGTGTACTGCTAGCTAACGAGCTTGCAAAACTTGATATTCCTGTGAAGCTTCTGATCGATTCAGCCGTGGCCTATAGCATGGATGAAGTAGACATGGTGTTTGTTGGAGCTGATGGAGTAGTTGAAAGTGGCGGGATAATTAACATGATGGGAACTTACCAAATCGCCCTAGTCGCACAGAGTATGAATAAACCAGTCTATGTAGCTGCAGAGAGTTACAAGTTTGCACGGCTCTACCCGTTGGATCAAAAGGACTTAGAACCAGCCTTGCGACCTATTGATTTCAGTGTTCCTGTTCCTCCTAAGGTTGAGGTAGAAAGATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTACTCTTCACTGATCTTGGTGTTCTCACTCCATCTGTAGTAAGTGACGAGCTTATTCAGCTTTACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

385

Amino Acids

42.81

Weight (kDa)

5.1

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	98 - 373	1.7e-70	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53880 AT1G53900 AT1G53900 AT1G53900 AT1G72340 AT1G72340 AT1G72340
fragaria_vesca	FvH4_6g35750 FvH4_6g35750 FvH4_6g35750 FvH4_6g35750
malus_domestica	MD09G1173400.v1.1 MD17G1153700.v1.1
prunus_persica	Prupe.3G031500_v2.0.a1
pyrus_communis	pycom09g09090 pycom17g14640
rosa_chinensis	RchiOBHm_Chr2g0147751
rosa_laevigata	RLG00000020276
rosa_multiflora	Rmu_sc0000308.1_g000030
rosa_roxburghii	Rroxscaffold_2G00099350
rosa_rugosa	Rorug02G0401700
rosa_samantha	Rh2AG458800 Rh2BG471900 Rh2CG446100 Rh2DG480800
rosa_wichuraiana	Rw2G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	819
AccII	CGCG	1 cut(s)	209
AciI	CCGC	9 cut(s)	107, 158, 207, 209, 305, 317, 335, 446, 861
AclWI	GGATC	1 cut(s)	981
AcsI	RAATTY	2 cut(s)	494, 545
AfaI	GTAC	3 cut(s)	619, 735, 1079
AgsI	TTSAA	8 cut(s)	72, 102, 380, 386, 508, 533, 656, 854
AhdI	GACNNNNNGTC	1 cut(s)	427
AluBI	AGCT	9 cut(s)	359, 398, 743, 751, 778, 839, 935, 1138, 1147
AluI	AGCT	9 cut(s)	359, 398, 743, 751, 778, 839, 935, 1138, 1147
Alw21I	GWGCWC	2 cut(s)	331, 707
Alw26I	GTCTC	1 cut(s)	280
Alw44I	GTGCAC	1 cut(s)	703
AlwI	GGATC	1 cut(s)	981
AoxI	GGCC	3 cut(s)	567, 716, 798
ApaLI	GTGCAC	1 cut(s)	703
ApeKI	GCWGC	1 cut(s)	935
ApoI	RAATTY	2 cut(s)	494, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AspLEI	GCGC	3 cut(s)	163, 468, 676
AspS9I	GGNCC	2 cut(s)	568, 628
AsuNHI	GCTAGC	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	628
AxyI	CCTNAGG	1 cut(s)	1032
BaeGI	GKGCMC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	2 cut(s)	331, 707
BbvI	GCAGC	1 cut(s)	922
BccI	CCATC	6 cut(s)	100, 364, 605, 836, 871, 1126
BceAI	ACGGC	2 cut(s)	779, 974
BcgI	CGANNNNNNTGC	2 cut(s)	684, 718
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	4 cut(s)	180, 351, 740, 899
BfmI	CTRYAG	3 cut(s)	802, 936, 1122
BglII	AGATCT	1 cut(s)	1049
BisI	GCNGC	5 cut(s)	159, 207, 318, 336, 936
BlsI	GCNGC	5 cut(s)	160, 208, 319, 337, 937
BmcAI	AGTACT	1 cut(s)	1079
Bme18I	GGWCC	1 cut(s)	628
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	568, 628
BmsI	GCATC	2 cut(s)	46, 172
BmtI	GCTAGC	1 cut(s)	743
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	625
BpuEI	CTTGAG	2 cut(s)	186, 374
Bsa29I	ATCGAT	1 cut(s)	786
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	207, 631, 795
Bse1I	ACTGG	1 cut(s)	923
Bse21I	CCTNAGG	1 cut(s)	1032
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	786
BseDI	CCNNGG	3 cut(s)	207, 631, 795
BseGI	GGATG	3 cut(s)	115, 455, 817
BseJI	GATNNNNATC	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	2 cut(s)	531, 1088
BseNI	ACTGG	1 cut(s)	923
BseRI	GAGGAG	3 cut(s)	72, 1059, 1062
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	1 cut(s)	922
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	569, 718, 800
BshVI	ATCGAT	1 cut(s)	786
BsiHKAI	GWGCWC	2 cut(s)	331, 707
BslFI	GGGAC	2 cut(s)	434, 1073
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	2 cut(s)	434, 1073
BsnI	GGCC	3 cut(s)	569, 718, 800
Bsp1286I	GDGCHC	2 cut(s)	331, 707
Bsp143I	GATC	6 cut(s)	226, 454, 783, 973, 1049, 1099
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	9 cut(s)	107, 158, 207, 209, 305, 317, 335, 446, 861
BspANI	GGCC	3 cut(s)	569, 718, 800
BspCNI	CTCAG	2 cut(s)	532, 1087
BspDI	ATCGAT	1 cut(s)	786
BspFNI	CGCG	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	940
BspOI	GCTAGC	1 cut(s)	743
BspPI	GGATC	1 cut(s)	981
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	923
BssECI	CCNNGG	3 cut(s)	207, 631, 795
BssMI	GATC	6 cut(s)	226, 454, 783, 973, 1049, 1099
BssT1I	CCWWGG	1 cut(s)	631
Bst6I	CTCTTC	1 cut(s)	1097
BstC8I	GCNNGC	3 cut(s)	198, 741, 753
BstDEI	CTNAG	6 cut(s)	238, 540, 590, 985, 1032, 1074
BstDSI	CCRYGG	3 cut(s)	207, 631, 795
BstF5I	GGATG	3 cut(s)	115, 455, 817
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	3 cut(s)	163, 468, 676
BstKTI	GATC	6 cut(s)	229, 457, 786, 976, 1052, 1102
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	6 cut(s)	226, 454, 783, 973, 1049, 1099
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 206, 317, 326, 335, 356, 902, 1144
BstSFI	CTRYAG	3 cut(s)	802, 936, 1122
BstSLI	GKGCMC	1 cut(s)	707
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	922
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	1049
BstYI	RGATCY	1 cut(s)	1049
Bsu15I	ATCGAT	1 cut(s)	786
Bsu36I	CCTNAGG	1 cut(s)	1032
BsuRI	GGCC	3 cut(s)	569, 718, 800
BsuTUI	ATCGAT	1 cut(s)	786
BtgI	CCRYGG	3 cut(s)	207, 631, 795
BtsCI	GGATG	3 cut(s)	115, 455, 817
BtsIMutI	CAGTG	2 cut(s)	1021, 1095
Cac8I	GCNNGC	3 cut(s)	198, 741, 753
CfoI	GCGC	3 cut(s)	163, 468, 676
Cfr13I	GGNCC	2 cut(s)	568, 628
Cfr42I	CCGCGG	1 cut(s)	210
ClaI	ATCGAT	1 cut(s)	786
Csp6I	GTAC	3 cut(s)	618, 734, 1078
CviAII	CATG	7 cut(s)	167, 417, 463, 632, 808, 823, 874
CviQI	GTAC	3 cut(s)	618, 734, 1078
DdeI	CTNAG	6 cut(s)	238, 540, 590, 985, 1032, 1074
DpnI	GATC	6 cut(s)	228, 456, 785, 975, 1051, 1101
DpnII	GATC	6 cut(s)	226, 454, 783, 973, 1049, 1099
DriI	GACNNNNNGTC	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	1097
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	1097
EciI	GGCGGA	2 cut(s)	122, 320
Eco130I	CCWWGG	1 cut(s)	631
Eco32I	GATATC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	628
Eco81I	CCTNAGG	1 cut(s)	1032
EcoRV	GATATC	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	7 cut(s)	170, 420, 466, 635, 811, 826, 877
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	2 cut(s)	434, 1073
FatI	CATG	7 cut(s)	166, 416, 462, 631, 807, 822, 873
FauI	CCCGC	2 cut(s)	439, 854
FblI	GTMKAC	1 cut(s)	819
Fnu4HI	GCNGC	5 cut(s)	159, 207, 318, 336, 936
FokI	GGATG	3 cut(s)	122, 462, 824
Fsp4HI	GCNGC	5 cut(s)	159, 207, 318, 336, 936
FspBI	CTAG	4 cut(s)	180, 351, 740, 899
GlaI	GCGC	3 cut(s)	162, 467, 675
GluI	GCNGC	5 cut(s)	159, 207, 318, 336, 936
GsuI	CTGGAG	1 cut(s)	625
HaeIII	GGCC	3 cut(s)	569, 718, 800
HhaI	GCGC	3 cut(s)	163, 468, 676
Hin1II	CATG	7 cut(s)	170, 420, 466, 635, 811, 826, 877
Hin6I	GCGC	3 cut(s)	161, 466, 674
HinP1I	GCGC	3 cut(s)	161, 466, 674
HindIII	AAGCTT	2 cut(s)	396, 776
HinfI	GANTC	7 cut(s)	11, 77, 233, 322, 475, 788, 1084
Hpy166II	GTNNAC	4 cut(s)	618, 705, 734, 820
Hpy188I	TCNGA	4 cut(s)	42, 403, 411, 783
Hpy188III	TCNNGA	5 cut(s)	230, 246, 391, 596, 642
Hpy8I	GTNNAC	4 cut(s)	618, 705, 734, 820
Hpy99I	CGWCG	2 cut(s)	219, 433
HpyAV	CCTTC	1 cut(s)	708
HpyCH4IV	ACGT	3 cut(s)	217, 428, 535
HpyCH4V	TGCA	7 cut(s)	564, 584, 705, 755, 938, 956, 1055
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 206, 317, 326, 335, 356, 902, 1144
HpyF3I	CTNAG	6 cut(s)	238, 540, 590, 985, 1032, 1074
HpySE526I	ACGT	3 cut(s)	217, 428, 535
Hsp92II	CATG	7 cut(s)	170, 420, 466, 635, 811, 826, 877
HspAI	GCGC	3 cut(s)	161, 466, 674
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	6 cut(s)	226, 454, 783, 973, 1049, 1099
LmnI	GCTCC	2 cut(s)	193, 836
Lsp1109I	GCAGC	1 cut(s)	922
LweI	GCATC	2 cut(s)	46, 172
MaeI	CTAG	4 cut(s)	180, 351, 740, 899
MaeII	ACGT	3 cut(s)	217, 428, 535
MaeIII	GTNAC	5 cut(s)	175, 218, 472, 944, 1130
MalI	GATC	6 cut(s)	228, 456, 785, 975, 1051, 1101
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	6 cut(s)	226, 454, 783, 973, 1049, 1099
MboII	GAAGA	2 cut(s)	261, 1084
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	1 cut(s)	1049
MhlI	GDGCHC	2 cut(s)	331, 707
MluCI	AATT	7 cut(s)	72, 171, 381, 494, 545, 579, 867
MlyI	GAGTC	2 cut(s)	469, 1078
MmeI	TCCRAC	4 cut(s)	171, 263, 814, 951
MseI	TTAA	3 cut(s)	276, 440, 870
MspA1I	CMGCKG	2 cut(s)	209, 446
MunI	CAATTG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	8 cut(s)	104, 206, 317, 326, 335, 356, 902, 1144
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	6 cut(s)	226, 454, 783, 973, 1049, 1099
NheI	GCTAGC	1 cut(s)	739
NlaIII	CATG	7 cut(s)	170, 420, 466, 635, 811, 826, 877
NmuCI	GTSAC	3 cut(s)	175, 472, 1130
PcsI	WCGNNNNNNNCGW	1 cut(s)	792
PfeI	GAWTC	5 cut(s)	11, 77, 233, 322, 788
PkrI	GCNGC	5 cut(s)	160, 208, 319, 337, 937
PleI	GAGTC	2 cut(s)	469, 1078
PpsI	GAGTC	2 cut(s)	469, 1078
PspPI	GGNCC	2 cut(s)	568, 628
PstI	CTGCAG	1 cut(s)	940
PsuI	RGATCY	1 cut(s)	1049
RsaI	GTAC	3 cut(s)	619, 735, 1079
RsaNI	GTAC	3 cut(s)	618, 734, 1078
SacII	CCGCGG	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	276, 440, 870
SatI	GCNGC	5 cut(s)	159, 207, 318, 336, 936
Sau3AI	GATC	6 cut(s)	226, 454, 783, 973, 1049, 1099
Sau96I	GGNCC	2 cut(s)	568, 628
ScaI	AGTACT	1 cut(s)	1079
SchI	GAGTC	2 cut(s)	469, 1078
SduI	GDGCHC	2 cut(s)	331, 707
SfaNI	GCATC	2 cut(s)	46, 172
SfcI	CTRYAG	3 cut(s)	802, 936, 1122
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	628
SmlI	CTYRAG	2 cut(s)	201, 389
SmoI	CTYRAG	2 cut(s)	201, 389
Sse9I	AATT	7 cut(s)	72, 171, 381, 494, 545, 579, 867
SsiI	CCGC	9 cut(s)	107, 158, 207, 209, 305, 317, 335, 446, 861
SspMI	CTAG	4 cut(s)	180, 351, 740, 899
StyI	CCWWGG	1 cut(s)	631
TaiI	ACGT	3 cut(s)	220, 431, 538
TaqI	TCGA	6 cut(s)	30, 214, 431, 478, 694, 786
TasI	AATT	7 cut(s)	72, 171, 381, 494, 545, 579, 867
TatI	WGTACW	3 cut(s)	617, 733, 1077
TauI	GCSGC	4 cut(s)	161, 209, 320, 338
TfiI	GAWTC	5 cut(s)	11, 77, 233, 322, 788
Tru1I	TTAA	3 cut(s)	276, 440, 870
Tru9I	TTAA	3 cut(s)	276, 440, 870
TscAI	CASTG	2 cut(s)	1021, 1102
TseFI	GTSAC	3 cut(s)	175, 472, 1130
TseI	GCWGC	1 cut(s)	935
Tsp45I	GTSAC	3 cut(s)	175, 472, 1130
TspDTI	ATGAA	5 cut(s)	126, 451, 592, 828, 929
TspRI	CASTG	2 cut(s)	1021, 1102
VneI	GTGCAC	1 cut(s)	703
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	2 cut(s)	494, 545
XmiI	GTMKAC	1 cut(s)	819
XspI	CTAG	4 cut(s)	180, 351, 740, 899
ZrmI	AGTACT	1 cut(s)	1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.