Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006573

Physical Location & Seq

Genomic Coordinates Forward (+)

51293397 .. 51297546

Gene Structure 4150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0401700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGAGATTCACAAGGGAATGGTAAAAGAAAGGATTACAAAACTTGGAACACTGAAGAAAGCAATGTTTTGCTTCAACTTATGGTTGAAGGCGCCAAACTTGGATTTCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCGAAGCTACTTCCTAAACTTAAGGAAAAACTTGGTTATGAAATAACTTTTAGTCATTACCAAAGCAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCAGCTTATGCGCCATAGTTCTGGATTTGGGTGGGATCCCATCACAAAAAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATACAGATGCTCCAACATTTGGAGCGGAGGAAAATGAATCTTGGGGAATTGGTGGCATAGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTACAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAGCAACCCTCCCAAGGTACCAGTATAGATGCTCCAGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGAACTGACTATGAAAATAATAGTGACTCAAAAAGGGCTACTGGTCAGGCTGAGGTTCTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGACCTATTGGATGCTATGAAGGAGACTCCAGGATTAACTGATGAAGATTGCTTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGAAGATGACTCCTGAACAGCGACTTAATTGGATCACCTATAAACAAATGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

325

Amino Acids

36.6

Weight (kDa)

5.4

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	15 - 112	4.2e-17	Myb/SANT-like DNA-binding domain
At2g29880_C	PF24769	278 - 322	1.5e-20	At2g29880 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53880 AT1G53900 AT1G53900 AT1G53900 AT1G72340 AT1G72340 AT1G72340
fragaria_vesca	FvH4_6g35750 FvH4_6g35750 FvH4_6g35750 FvH4_6g35750
malus_domestica	MD09G1173400.v1.1 MD17G1153700.v1.1
prunus_persica	Prupe.3G031500_v2.0.a1
pyrus_communis	pycom09g09090 pycom17g14640
rosa_chinensis	RchiOBHm_Chr2g0147751
rosa_laevigata	RLG00000020276
rosa_multiflora	Rmu_sc0000308.1_g000030
rosa_roxburghii	Rroxscaffold_2G00099350
rosa_rugosa	Rorug02G0401700
rosa_samantha	Rh2AG458800 Rh2BG471900 Rh2CG446100 Rh2DG480800
rosa_wichuraiana	Rw2G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	620
AccB1I	GGYRCC	2 cut(s)	92, 620
AccB7I	CCANNNNNTGG	2 cut(s)	356, 476
AccBSI	CCGCTC	1 cut(s)	482
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	3 cut(s)	281, 294, 962
AcsI	RAATTY	1 cut(s)	783
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	2 cut(s)	555, 622
AfiI	CCNNNNNNNGG	3 cut(s)	356, 476, 617
AflII	CTTAAG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	5 cut(s)	77, 89, 340, 400, 925
AjnI	CCWGG	1 cut(s)	850
AluBI	AGCT	3 cut(s)	154, 256, 641
AluI	AGCT	3 cut(s)	154, 256, 641
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	3 cut(s)	281, 294, 962
ApoI	RAATTY	1 cut(s)	783
AseI	ATTAAT	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	95, 264
AsuHPI	GGTGA	2 cut(s)	464, 949
BaeGI	GKGCMC	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	92, 620
BanII	GRGCYC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	726
BccI	CCATC	3 cut(s)	299, 512, 601
BciT130I	CCWGG	1 cut(s)	852
BcoDI	GTCTC	1 cut(s)	839
BfaI	CTAG	2 cut(s)	449, 734
BfoI	RGCGCY	1 cut(s)	96
BfrI	CTTAAG	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	852
BmiI	GGNNCC	3 cut(s)	94, 288, 622
BmrFI	CCNGG	1 cut(s)	852
BmsI	GCATC	3 cut(s)	454, 622, 823
BpmI	CTGGAG	2 cut(s)	621, 834
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 476, 617
Bse1I	ACTGG	3 cut(s)	433, 624, 721
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	2 cut(s)	346, 838
BseLI	CCNNNNNNNGG	3 cut(s)	356, 476, 617
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	266, 717
BseNI	ACTGG	3 cut(s)	433, 624, 721
BseSI	GKGCMC	1 cut(s)	363
BshNI	GGYRCC	2 cut(s)	92, 620
BslI	CCNNNNNNNGG	3 cut(s)	356, 476, 617
BsmAI	GTCTC	1 cut(s)	839
Bsp1286I	GDGCHC	2 cut(s)	363, 440
Bsp143I	GATC	3 cut(s)	286, 532, 954
BspACI	CCGC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	265, 718
BspLI	GGNNCC	3 cut(s)	94, 288, 622
BspPI	GGATC	3 cut(s)	281, 294, 962
BspT107I	GGYRCC	2 cut(s)	92, 620
BspTI	CTTAAG	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	433, 624, 721
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	3 cut(s)	286, 532, 954
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	797
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	252, 726
BstF5I	GGATG	2 cut(s)	346, 838
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 264
BstKTI	GATC	3 cut(s)	289, 535, 957
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	3 cut(s)	286, 532, 954
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	850
BstSLI	GKGCMC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	346, 838
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	51, 306
CfoI	GCGC	2 cut(s)	95, 264
Csp6I	GTAC	2 cut(s)	554, 621
CviAII	CATG	2 cut(s)	356, 547
CviJI	RGCY	8 cut(s)	154, 256, 438, 641, 713, 725, 792, 881
CviKI_1	RGCY	8 cut(s)	154, 256, 438, 641, 713, 725, 792, 881
CviQI	GTAC	2 cut(s)	554, 621
DdeI	CTNAG	2 cut(s)	252, 726
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	3 cut(s)	288, 534, 956
DpnII	GATC	3 cut(s)	286, 532, 954
Eam1104I	CTCTTC	1 cut(s)	797
EarI	CTCTTC	1 cut(s)	797
Eco130I	CCWWGG	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	440
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	2 cut(s)	359, 550
FatI	CATG	2 cut(s)	355, 546
FokI	GGATG	2 cut(s)	333, 845
FriOI	GRGCYC	1 cut(s)	440
FspBI	CTAG	2 cut(s)	449, 734
GlaI	GCGC	2 cut(s)	94, 263
GsuI	CTGGAG	2 cut(s)	621, 834
HaeII	RGCGCY	1 cut(s)	96
HhaI	GCGC	2 cut(s)	95, 264
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	359, 550
Hin6I	GCGC	2 cut(s)	93, 262
HinP1I	GCGC	2 cut(s)	93, 262
HinfI	GANTC	9 cut(s)	8, 303, 494, 569, 658, 701, 809, 847, 931
HphI	GGTGA	2 cut(s)	464, 949
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	8 cut(s)	110, 273, 383, 734, 813, 884, 922, 935
HpyAV	CCTTC	2 cut(s)	83, 835
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	407, 425, 973
HpyF3I	CTNAG	2 cut(s)	252, 726
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	359, 550
HspAI	GCGC	2 cut(s)	93, 262
KasI	GGCGCC	1 cut(s)	92
KpnI	GGTACC	1 cut(s)	624
Kzo9I	GATC	3 cut(s)	286, 532, 954
LmnI	GCTCC	4 cut(s)	472, 479, 640, 646
LweI	GCATC	3 cut(s)	454, 622, 823
MaeI	CTAG	2 cut(s)	449, 734
MaeIII	GTNAC	4 cut(s)	342, 698, 766, 821
MalI	GATC	3 cut(s)	288, 534, 956
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	3 cut(s)	286, 532, 954
MboII	GAAGA	5 cut(s)	68, 814, 878, 910, 937
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	363, 440
MluCI	AATT	6 cut(s)	244, 402, 504, 762, 783, 949
Mly113I	GGCGCC	1 cut(s)	93
MlyI	GAGTC	5 cut(s)	578, 652, 695, 841, 925
MmeI	TCCRAC	3 cut(s)	374, 391, 494
MnlI	CCTC	5 cut(s)	139, 385, 478, 622, 721
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	7 cut(s)	117, 168, 228, 794, 857, 894, 948
MspCI	CTTAAG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	852
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	3 cut(s)	286, 532, 954
NlaIII	CATG	2 cut(s)	359, 550
NlaIV	GGNNCC	3 cut(s)	94, 288, 622
NmuCI	GTSAC	4 cut(s)	342, 698, 766, 821
NspI	RCATGY	1 cut(s)	550
PciI	ACATGT	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	4 cut(s)	8, 303, 494, 809
PflMI	CCANNNNNTGG	2 cut(s)	356, 476
PfoI	TCCNGGA	1 cut(s)	850
PleI	GAGTC	5 cut(s)	577, 652, 695, 841, 925
PluTI	GGCGCC	1 cut(s)	96
PpsI	GAGTC	5 cut(s)	577, 652, 695, 841, 925
PscI	ACATGT	1 cut(s)	546
PshBI	ATTAAT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	850
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	3 cut(s)	94, 288, 622
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	2 cut(s)	555, 622
RsaNI	GTAC	2 cut(s)	554, 621
SaqAI	TTAA	7 cut(s)	117, 168, 228, 794, 857, 894, 948
Sau3AI	GATC	3 cut(s)	286, 532, 954
SchI	GAGTC	5 cut(s)	578, 652, 695, 841, 925
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	2 cut(s)	363, 440
SetI	ASST	8 cut(s)	156, 258, 454, 622, 643, 732, 828, 962
SfaNI	GCATC	3 cut(s)	454, 622, 823
SfoI	GGCGCC	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	167, 660
SmoI	CTYRAG	2 cut(s)	167, 660
Sse9I	AATT	6 cut(s)	244, 402, 504, 762, 783, 949
SsiI	CCGC	1 cut(s)	482
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	2 cut(s)	449, 734
StyD4I	CCNGG	1 cut(s)	850
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	535
TaqII	GACCGA	1 cut(s)	357
TasI	AATT	6 cut(s)	244, 402, 504, 762, 783, 949
TfiI	GAWTC	4 cut(s)	8, 303, 494, 809
Tru1I	TTAA	7 cut(s)	117, 168, 228, 794, 857, 894, 948
Tru9I	TTAA	7 cut(s)	117, 168, 228, 794, 857, 894, 948
TscAI	CASTG	2 cut(s)	58, 313
TseFI	GTSAC	4 cut(s)	342, 698, 766, 821
Tsp45I	GTSAC	4 cut(s)	342, 698, 766, 821
TspDTI	ATGAA	6 cut(s)	201, 333, 507, 702, 854, 879
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	2 cut(s)	58, 313
Van91I	CCANNNNNTGG	2 cut(s)	356, 476
Vha464I	CTTAAG	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	1 cut(s)	783
XbaI	TCTAGA	1 cut(s)	733
XceI	RCATGY	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	2 cut(s)	449, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.