AT1G53900

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20127545 .. 20131050
3506 bp
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UTR
Exon/CDS
Intron
AT1G53900.1

Sequence Viewer

Length: 1743 bp
ATGGTGAAGATTCATCCTGACAAGGCGTTTCCTGTGGATTTTAGCGTGGGAGAAGGCAAGACTTCGCCGTACTTAACGACGGAGAAAGAGAGTTTCACGATTTGGATGAGATCTCTTGTGTTTCATAGTAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAATTATAACTCCAAGAGTTGTAGTGAAGTTTACCTTATGGACTTATACGGCAAAATCTTGTTTACATTACGTCAAAAGAAATTGGGATTATTCAAATCTTGGAAAGGATATAACTCAACCGGGACAAGATTTCAACTAAGAAAAAACTTCAAGATATTGCCAAAGGGTTCATCTTCATCATACAAAGTTGTAATGGGATCGCGTATAGTTGATGGTGATCATCAATCTTGTTATAAGATTGTAAAACGCAAATCGGTTTTCACAATCGAGGATGGATCAGGAAGATTATTGGCAGAAGTTAAAAAGAAACAATCAAATATCAAAAGTTTAGATCTTGGGAAAGATGTATTAACAATGATGGTGGAGCCACAACTTGAAACTGAGATTTTCGAAGAATTCATCAAAATGTGGAGAGAATCGGCTTCGTTTATCCTCGATAAGCATCAGAACAACAAACCCATTTCTCTAACTCATTCAATTGATTCTCCTCCACCACCATCTGCTTCAATGGCGGATGAAAACCCTAACCCTAATCCTATTTCGGCTTATTACCAAACCAGAGCGGCGCATCATGGAATTGTGACTAGCGAGTGGTTGGAGCAGGCTCAAGCCGCGGTTCGACGTTACCCTGATCGTGATTCCTTAGTTTCGGGAAGACCCTTTAGCGTGATTGAGGACTTTAATAGTTGGAGACAGCAACCTGATTTGGCGGAGGCTGTTGCGGCGATTCGTGCTCTTGCGGCTGTTATTAGGGCTAGTGAAGCTACTACTATGATGGAACTTGAAATTGAACTCAAGAAAGCTTCTGATACTCTGAAATCATGGGACACAACGTCGATATCCTTAACAGCGGGATGTGATCTATTCATGCGCTATGTGACTCGAACATCTGCTTTAGAATTTGAGGACTTCAACTCTGCGAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCCCGAACGATAATTGCAATGCTTAGTCAAGATTTCATATTTGATGGGTGTACTATTCTGGTCCATGGTTTCTCCAGAGTTGTGTTTGAAATACTAAAGACATCAGCGCAAAACAAGAAACTCTTTCGAGTGTTGTGCACAGAGGGAAGGCCAGATAAAACAGGTGTACTGCTAGCTAACGAGCTTGCAAAACTTGATATTCCTGTGAAGCTTCTGATCGATTCAGCCGTGGCCTATAGCATGGATGAAGTAGACATGGTGTTTGTTGGAGCTGATGGAGTAGTTGAAAGTGGCGGGATAATTAACATGATGGGAACTTACCAAATCGCCCTAGTCGCACAGAGTATGAATAAACCAGTCTATGTAGCTGCAGAGAGTTACAAGTTTGCACGGCTCTACCCGTTGGATCAAAAGGACTTAGAACCAGCCTTGCGACCTATTGATTTCAGTGTTCCTGTTCCTCCTAAGGTTGAGGTAGAAAGATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTACTCTTCACTGATCTTGGTGTTCTCACTCCATCTGTAGTAAGTGACGAGCTTATTCAGCTTTACTTGTAA

Protein Analysis

580

Amino Acids

65.14

Weight (kDa)

7.55

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 31 - 186 1.3e-22 LURP-one-related
IF-2B PF01008 293 - 568 5.2e-70 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 186, 414
AccBSI CCGCTC 1 cut(s) 743
AccI GTMKAC 1 cut(s) 1404
AccII CGCG 2 cut(s) 382, 794
AciI CCGC 9 cut(s) 692, 743, 792, 794, 890, 902, 920, 1031, 1446
AclWI GGATC 3 cut(s) 385, 463, 1566
AcsI RAATTY 3 cut(s) 575, 1079, 1130
AfaI GTAC 4 cut(s) 71, 1204, 1320, 1664
AhdI GACNNNNNGTC 1 cut(s) 1012
AluBI AGCT 9 cut(s) 944, 983, 1328, 1336, 1363, 1424, 1520, 1723, 1732
AluI AGCT 9 cut(s) 944, 983, 1328, 1336, 1363, 1424, 1520, 1723, 1732
Alw21I GWGCWC 2 cut(s) 916, 1292
Alw26I GTCTC 1 cut(s) 865
Alw44I GTGCAC 1 cut(s) 1288
AlwI GGATC 3 cut(s) 385, 463, 1566
AoxI GGCC 3 cut(s) 1152, 1301, 1383
ApaLI GTGCAC 1 cut(s) 1288
ApeKI GCWGC 2 cut(s) 135, 1520
ApoI RAATTY 3 cut(s) 575, 1079, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 1397, 1429
AspLEI GCGC 3 cut(s) 748, 1053, 1261
AspS9I GGNCC 2 cut(s) 1153, 1213
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 16, 407
AsuII TTCGAA 1 cut(s) 570
AsuNHI GCTAGC 1 cut(s) 1324
AvaII GGWCC 1 cut(s) 1213
AxyI CCTNAGG 1 cut(s) 1617
BaeGI GKGCMC 1 cut(s) 1292
BbsI GAAGAC 1 cut(s) 841
Bbv12I GWGCWC 2 cut(s) 916, 1292
BbvI GCAGC 2 cut(s) 122, 1507
BccI CCATC 9 cut(s) 386, 446, 532, 685, 949, 1190, 1421, 1456, 1711
BceAI ACGGC 4 cut(s) 52, 244, 1364, 1559
BcgI CGANNNNNNTGC 2 cut(s) 1269, 1303
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 865
BfaI CTAG 4 cut(s) 765, 936, 1325, 1484
BfmI CTRYAG 3 cut(s) 1387, 1521, 1707
BglII AGATCT 3 cut(s) 110, 511, 1634
BisI GCNGC 6 cut(s) 136, 744, 792, 903, 921, 1521
BlsI GCNGC 6 cut(s) 137, 745, 793, 904, 922, 1522
BmcAI AGTACT 1 cut(s) 1664
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 1213
BmeRI GACNNNNNGTC 1 cut(s) 1012
BmgT120I GGNCC 2 cut(s) 1153, 1213
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 2 cut(s) 631, 757
BmtI GCTAGC 1 cut(s) 1328
BpiI GAAGAC 1 cut(s) 841
BpmI CTGGAG 1 cut(s) 1210
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 771, 959
BpuMI CCSGG 1 cut(s) 301
Bsa29I ATCGAT 1 cut(s) 1371
BsaBI GATNNNNATC 2 cut(s) 396, 621
BsaJI CCNNGG 3 cut(s) 792, 1216, 1380
Bse1I ACTGG 1 cut(s) 1508
Bse21I CCTNAGG 1 cut(s) 1617
Bse3DI GCAATG 1 cut(s) 1176
Bse8I GATNNNNATC 2 cut(s) 396, 621
BseCI ATCGAT 1 cut(s) 1371
BseDI CCNNGG 3 cut(s) 792, 1216, 1380
BseGI GGATG 6 cut(s) 13, 111, 457, 700, 1040, 1402
BseJI GATNNNNATC 2 cut(s) 396, 621
BseMI GCAATG 1 cut(s) 1176
BseMII CTCAG 3 cut(s) 552, 1116, 1673
BseNI ACTGG 1 cut(s) 1508
BseRI GAGGAG 3 cut(s) 657, 1644, 1647
BseSI GKGCMC 1 cut(s) 1292
BseXI GCAGC 2 cut(s) 122, 1507
BsgI GTGCAG 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 382, 794
BshFI GGCC 3 cut(s) 1154, 1303, 1385
BshVI ATCGAT 1 cut(s) 1371
BsiHKAI GWGCWC 2 cut(s) 916, 1292
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 3 cut(s) 316, 1019, 1658
BsmAI GTCTC 1 cut(s) 865
BsmFI GGGAC 3 cut(s) 316, 1019, 1658
BsnI GGCC 3 cut(s) 1154, 1303, 1385
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 2 cut(s) 916, 1292
Bsp19I CCATGG 1 cut(s) 1216
BspACI CCGC 9 cut(s) 692, 743, 792, 794, 890, 902, 920, 1031, 1446
BspANI GGCC 3 cut(s) 1154, 1303, 1385
BspCNI CTCAG 3 cut(s) 553, 1117, 1672
BspDI ATCGAT 1 cut(s) 1371
BspFNI CGCG 2 cut(s) 382, 794
BspLI GGNNCC 1 cut(s) 546
BspMAI CTGCAG 1 cut(s) 1525
BspOI GCTAGC 1 cut(s) 1328
BspPI GGATC 3 cut(s) 385, 463, 1566
BspT104I TTCGAA 1 cut(s) 570
BsrBI CCGCTC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 1176
BsrI ACTGG 1 cut(s) 1508
BssECI CCNNGG 3 cut(s) 792, 1216, 1380
BssT1I CCWWGG 1 cut(s) 1216
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 1682
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 783, 1326, 1338
BstDEI CTNAG 8 cut(s) 317, 561, 823, 1125, 1175, 1570, 1617, 1659
BstDSI CCRYGG 3 cut(s) 792, 1216, 1380
BstF5I GGATG 6 cut(s) 13, 111, 457, 700, 1040, 1402
BstFNI CGCG 2 cut(s) 382, 794
BstHHI GCGC 3 cut(s) 748, 1053, 1261
BstMAI GTCTC 1 cut(s) 865
BstMWI GCNNNNNNNGC 8 cut(s) 689, 791, 902, 911, 920, 941, 1487, 1729
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 3 cut(s) 1387, 1521, 1707
BstSLI GKGCMC 1 cut(s) 1292
BstUI CGCG 2 cut(s) 382, 794
BstV1I GCAGC 2 cut(s) 122, 1507
BstV2I GAAGAC 1 cut(s) 841
BstX2I RGATCY 3 cut(s) 110, 511, 1634
BstYI RGATCY 3 cut(s) 110, 511, 1634
Bsu15I ATCGAT 1 cut(s) 1371
Bsu36I CCTNAGG 1 cut(s) 1617
BsuRI GGCC 3 cut(s) 1154, 1303, 1385
BsuTUI ATCGAT 1 cut(s) 1371
BtgI CCRYGG 3 cut(s) 792, 1216, 1380
BtsCI GGATG 6 cut(s) 13, 111, 457, 700, 1040, 1402
BtsIMutI CAGTG 2 cut(s) 1606, 1680
Cac8I GCNNGC 3 cut(s) 783, 1326, 1338
CfoI GCGC 3 cut(s) 748, 1053, 1261
Cfr13I GGNCC 2 cut(s) 1153, 1213
Cfr42I CCGCGG 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 1371
Csp6I GTAC 4 cut(s) 70, 1203, 1319, 1663
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 7 cut(s) 752, 1002, 1048, 1217, 1393, 1408, 1459
CviQI GTAC 4 cut(s) 70, 1203, 1319, 1663
DdeI CTNAG 8 cut(s) 317, 561, 823, 1125, 1175, 1570, 1617, 1659
DriI GACNNNNNGTC 1 cut(s) 1012
Eam1104I CTCTTC 1 cut(s) 1682
Eam1105I GACNNNNNGTC 1 cut(s) 1012
EarI CTCTTC 1 cut(s) 1682
EciI GGCGGA 2 cut(s) 707, 905
Eco130I CCWWGG 1 cut(s) 1216
Eco32I GATATC 1 cut(s) 1020
Eco47I GGWCC 1 cut(s) 1213
Eco81I CCTNAGG 1 cut(s) 1617
EcoRI GAATTC 1 cut(s) 575
EcoRV GATATC 1 cut(s) 1020
EcoT14I CCWWGG 1 cut(s) 1216
ErhI CCWWGG 1 cut(s) 1216
FaeI CATG 7 cut(s) 755, 1005, 1051, 1220, 1396, 1411, 1462
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 1259, 1291
FaqI GGGAC 3 cut(s) 316, 1019, 1658
FatI CATG 7 cut(s) 751, 1001, 1047, 1216, 1392, 1407, 1458
FauI CCCGC 2 cut(s) 1024, 1439
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 1404
Fnu4HI GCNGC 6 cut(s) 136, 744, 792, 903, 921, 1521
FokI GGATG 5 cut(s) 118, 464, 707, 1047, 1409
Fsp4HI GCNGC 6 cut(s) 136, 744, 792, 903, 921, 1521
FspBI CTAG 4 cut(s) 765, 936, 1325, 1484
GlaI GCGC 3 cut(s) 747, 1052, 1260
GluI GCNGC 6 cut(s) 136, 744, 792, 903, 921, 1521
GsuI CTGGAG 1 cut(s) 1210
HaeIII GGCC 3 cut(s) 1154, 1303, 1385
HapII CCGG 1 cut(s) 300
HhaI GCGC 3 cut(s) 748, 1053, 1261
Hin1II CATG 7 cut(s) 755, 1005, 1051, 1220, 1396, 1411, 1462
Hin6I GCGC 3 cut(s) 746, 1051, 1259
HinP1I GCGC 3 cut(s) 746, 1051, 1259
HindIII AAGCTT 2 cut(s) 981, 1361
HinfI GANTC 9 cut(s) 10, 149, 596, 662, 818, 907, 1060, 1373, 1669
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 16, 407
Hpy166II GTNNAC 6 cut(s) 211, 243, 1203, 1290, 1319, 1405
Hpy188I TCNGA 4 cut(s) 627, 988, 996, 1368
Hpy188III TCNNGA 9 cut(s) 17, 97, 331, 459, 815, 831, 976, 1181, 1227
Hpy8I GTNNAC 6 cut(s) 211, 243, 1203, 1290, 1319, 1405
Hpy99I CGWCG 3 cut(s) 82, 804, 1018
HpyAV CCTTC 2 cut(s) 47, 1293
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 4 cut(s) 250, 802, 1013, 1120
HpyCH4V TGCA 8 cut(s) 138, 1149, 1169, 1290, 1340, 1523, 1541, 1640
HpyF10VI GCNNNNNNNGC 8 cut(s) 689, 791, 902, 911, 920, 941, 1487, 1729
HpyF3I CTNAG 8 cut(s) 317, 561, 823, 1125, 1175, 1570, 1617, 1659
HpySE526I ACGT 4 cut(s) 250, 802, 1013, 1120
Hsp92II CATG 7 cut(s) 755, 1005, 1051, 1220, 1396, 1411, 1462
HspAI GCGC 3 cut(s) 746, 1051, 1259
Ksp22I TGATCA 1 cut(s) 397
KspI CCGCGG 1 cut(s) 795
LmnI GCTCC 3 cut(s) 544, 778, 1421
Lsp1109I GCAGC 2 cut(s) 122, 1507
LweI GCATC 2 cut(s) 631, 757
MaeI CTAG 4 cut(s) 765, 936, 1325, 1484
MaeII ACGT 4 cut(s) 250, 802, 1013, 1120
MaeIII GTNAC 5 cut(s) 760, 803, 1057, 1529, 1715
MbiI CCGCTC 1 cut(s) 743
MboII GAAGA 6 cut(s) 19, 345, 474, 584, 846, 1669
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 3 cut(s) 110, 511, 1634
MhlI GDGCHC 2 cut(s) 916, 1292
MlyI GAGTC 2 cut(s) 1054, 1663
MmeI TCCRAC 4 cut(s) 756, 848, 1399, 1536
MseI TTAA 7 cut(s) 74, 164, 480, 530, 861, 1025, 1455
MslI CAYNNNNRTG 1 cut(s) 584
MspA1I CMGCKG 2 cut(s) 794, 1031
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 301
MunI CAATTG 1 cut(s) 657
MvnI CGCG 2 cut(s) 382, 794
MwoI GCNNNNNNNGC 8 cut(s) 689, 791, 902, 911, 920, 941, 1487, 1729
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 1 cut(s) 1216
NheI GCTAGC 1 cut(s) 1324
NlaIII CATG 7 cut(s) 755, 1005, 1051, 1220, 1396, 1411, 1462
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 3 cut(s) 760, 1057, 1715
NspV TTCGAA 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 1377
PfeI GAWTC 7 cut(s) 10, 149, 596, 662, 818, 907, 1373
PkrI GCNGC 6 cut(s) 137, 745, 793, 904, 922, 1522
PleI GAGTC 2 cut(s) 1054, 1663
PpsI GAGTC 2 cut(s) 1054, 1663
PsiI TTATAA 2 cut(s) 186, 414
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 2 cut(s) 1153, 1213
PstI CTGCAG 1 cut(s) 1525
PsuI RGATCY 3 cut(s) 110, 511, 1634
RsaI GTAC 4 cut(s) 71, 1204, 1320, 1664
RsaNI GTAC 4 cut(s) 70, 1203, 1319, 1663
RseI CAYNNNNRTG 1 cut(s) 584
SacII CCGCGG 1 cut(s) 795
SaqAI TTAA 7 cut(s) 74, 164, 480, 530, 861, 1025, 1455
SatI GCNGC 6 cut(s) 136, 744, 792, 903, 921, 1521
Sau96I GGNCC 2 cut(s) 1153, 1213
ScaI AGTACT 1 cut(s) 1664
SchI GAGTC 2 cut(s) 1054, 1663
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 2 cut(s) 916, 1292
SfaNI GCATC 2 cut(s) 631, 757
SfcI CTRYAG 3 cut(s) 1387, 1521, 1707
Sfr303I CCGCGG 1 cut(s) 795
SfuI TTCGAA 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 795
SinI GGWCC 1 cut(s) 1213
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 786, 974
SmoI CTYRAG 2 cut(s) 786, 974
SsiI CCGC 9 cut(s) 692, 743, 792, 794, 890, 902, 920, 1031, 1446
SspMI CTAG 4 cut(s) 765, 936, 1325, 1484
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 1216
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 4 cut(s) 253, 805, 1016, 1123
TaqI TCGA 9 cut(s) 172, 447, 570, 615, 799, 1016, 1063, 1279, 1371
TatI WGTACW 3 cut(s) 1202, 1318, 1662
TauI GCSGC 4 cut(s) 746, 794, 905, 923
TfiI GAWTC 7 cut(s) 10, 149, 596, 662, 818, 907, 1373
Tru1I TTAA 7 cut(s) 74, 164, 480, 530, 861, 1025, 1455
Tru9I TTAA 7 cut(s) 74, 164, 480, 530, 861, 1025, 1455
TscAI CASTG 2 cut(s) 1606, 1687
TseFI GTSAC 3 cut(s) 760, 1057, 1715
TseI GCWGC 2 cut(s) 135, 1520
Tsp45I GTSAC 3 cut(s) 760, 1057, 1715
TspDTI ATGAA 9 cut(s) 113, 339, 345, 568, 711, 1036, 1177, 1413, 1514
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 1606, 1687
VneI GTGCAC 1 cut(s) 1288
VpaK11BI GGWCC 1 cut(s) 1213
XapI RAATTY 3 cut(s) 575, 1079, 1130
XmiI GTMKAC 1 cut(s) 1404
XspI CTAG 4 cut(s) 765, 936, 1325, 1484
ZrmI AGTACT 1 cut(s) 1664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.