AT1G53903

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012920
Physical Location & Seq
Forward (+)
20132071 .. 20133045
975 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53903.1

Sequence Viewer

Length: 381 bp
ATGACTAAAATCTCTGTTGGATTGCAACTTGTGACAAGAGATTCGAGGGAAAAACTAAACAATATAGTGATCAAATCTTCACTGAGACTAAACCGATCCAATCCAAACATCTCGGAGCTTTGTTTCCTTAAAACATGTCATCTCTGCAATAAACAACTCCATCAAGACAAAGATGTTTACATGTACAGAGGAGATTTGGGATTTTGTAGTAGAGAGTGCAGAGAAAGTCAGATGTTGATTGATGATAGAAAAGAACTAGAGGCTTCGACGAAGATGATGTTGGCTTCGTACAGACGATGTAATAACGGCGCCGGAAAAAGCGAGTCTCGGAATTTGTTTGATGATCTCCGGCGACGACGTCAATTATTTATAGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

126

Amino Acids

14.76

Weight (kDa)

9.57

Isoelectric Point (pI)

69.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 38 - 84 1.4e-21 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53885 AT1G53903
fragaria_vesca FvH4_6g35720
malus_domestica MD09G1173600.v1.1 MD17G1153400.v1.1
prunus_persica Prupe.3G031700_v2.0.a1
pyrus_communis pycom09g09100 pycom17g14630
rosa_chinensis RchiOBHm_Chr2g0147731
rosa_laevigata RLG00000020273
rosa_multiflora Rmu_sc0000308.1_g000023
rosa_roxburghii Rroxscaffold_2G00099370
rosa_rugosa Rorug02G0401400
rosa_samantha Rh2AG458500 Rh2BG471600 Rh2CG445800 Rh2DG480500
rosa_wichuraiana Rw2G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 361
AccB1I GGYRCC 1 cut(s) 308
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 331
AcyI GRCGYC 2 cut(s) 309, 358
AfaI GTAC 2 cut(s) 185, 290
AflIII ACRYGT 2 cut(s) 134, 180
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 79, 330
AlwI GGATC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 331
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AspLEI GCGC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 308
BccI CCATC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 322
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 79, 330
BfaI CTAG 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 310
BsaHI GRCGYC 2 cut(s) 309, 358
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 308
BsiSI CCGG 2 cut(s) 312, 349
BsmAI GTCTC 2 cut(s) 79, 330
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 3 cut(s) 69, 95, 343
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 310
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 308
BsrGI TGTACA 1 cut(s) 183
BssMI GATC 3 cut(s) 69, 95, 343
BssNI GRCGYC 2 cut(s) 309, 358
BstACI GRCGYC 2 cut(s) 309, 358
BstAUI TGTACA 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 3 cut(s) 72, 98, 346
BstMAI GTCTC 2 cut(s) 79, 330
BstMBI GATC 3 cut(s) 69, 95, 343
BstNSI RCATGY 2 cut(s) 138, 184
BtsIMutI CAGTG 1 cut(s) 80
CfoI GCGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 184, 289
CviAII CATG 2 cut(s) 135, 181
CviJI RGCY 3 cut(s) 118, 263, 284
CviKI_1 RGCY 3 cut(s) 118, 263, 284
CviQI GTAC 2 cut(s) 184, 289
DdeI CTNAG 1 cut(s) 83
DinI GGCGCC 1 cut(s) 310
DpnI GATC 3 cut(s) 71, 97, 345
DpnII GATC 3 cut(s) 69, 95, 343
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
FaeI CATG 2 cut(s) 138, 184
FaiI YATR 4 cut(s) 65, 136, 182, 371
FatI CATG 2 cut(s) 134, 180
FbaI TGATCA 1 cut(s) 69
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 310
HaeII RGCGCY 1 cut(s) 312
HapII CCGG 2 cut(s) 312, 349
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 2 cut(s) 309, 358
Hin1II CATG 2 cut(s) 138, 184
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 2 cut(s) 41, 323
HpaII CCGG 2 cut(s) 312, 349
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 115, 231, 330
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 3 cut(s) 271, 357, 360
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 3 cut(s) 25, 147, 219
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 358
Hsp92I GRCGYC 2 cut(s) 309, 358
Hsp92II CATG 2 cut(s) 138, 184
HspAI GCGC 1 cut(s) 309
KasI GGCGCC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 95, 343
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 2 cut(s) 325, 362
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 71, 97, 345
MboI GATC 3 cut(s) 69, 95, 343
MboII GAAGA 2 cut(s) 69, 283
MluCI AATT 2 cut(s) 331, 362
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 3 cut(s) 39, 182, 253
MseI TTAA 1 cut(s) 129
MspI CCGG 2 cut(s) 312, 349
NarI GGCGCC 1 cut(s) 309
NdeII GATC 3 cut(s) 69, 95, 343
NlaIII CATG 2 cut(s) 138, 184
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 2 cut(s) 138, 184
PciI ACATGT 2 cut(s) 134, 180
PfeI GAWTC 1 cut(s) 41
PflFI GACNNNGTC 1 cut(s) 357
PleI GAGTC 1 cut(s) 331
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 331
PscI ACATGT 2 cut(s) 134, 180
PspN4I GGNNCC 1 cut(s) 310
PsyI GACNNNGTC 1 cut(s) 357
RsaI GTAC 2 cut(s) 185, 290
RsaNI GTAC 2 cut(s) 184, 289
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 3 cut(s) 69, 95, 343
SchI GAGTC 1 cut(s) 332
SetI ASST 2 cut(s) 120, 361
SfoI GGCGCC 1 cut(s) 310
Sse9I AATT 2 cut(s) 331, 362
SspDI GGCGCC 1 cut(s) 308
SspMI CTAG 1 cut(s) 257
TaiI ACGT 1 cut(s) 361
TaqI TCGA 2 cut(s) 44, 266
TasI AATT 2 cut(s) 331, 362
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspRI CASTG 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 357
XapI RAATTY 1 cut(s) 331
XceI RCATGY 2 cut(s) 138, 184
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.