RLG00000020273

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012920
Physical Location & Seq
Reverse (-)
63128371 .. 63128903
533 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020273

Sequence Viewer

Length: 432 bp
ATGAATGATAAGACCAAGAGTTCAATGGCAGCTGTTGGGTTGGGACTTCTCCTTACACAGATTTCACAAGGGAAGAAGTCGTCAAATATCGTTGTGAAACCTGCCTTGAGACCGAGAATCAAACCCGCTGTTACGGATGGCTACAGCTCCCGGCGTGATCAGCAGCACTCGTGTTTTCTTAAAGCATGCCATTTATGCAACAAGGGATTGAGCCTTGATAAAGAGGTCTATATGTACAGAGGGGATATCGGATTTTGCAGCATAGTGTGCCGAGACAGGCAGATTGCTTTGGATGAAATGAGAGAACTAGAGGCTTCCACTAAGAAAATGCTAGCAGCATATAGGCGCCGTTCTTGCAGAAGCAATGTCTTAGAGGATGTGCATCAGCAACAAAAGCGAATCCCTAGTCAGCGAACAATATTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

144

Amino Acids

16.2

Weight (kDa)

9.85

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 51 - 100 1.8e-18 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53885 AT1G53903
fragaria_vesca FvH4_6g35720
malus_domestica MD09G1173600.v1.1 MD17G1153400.v1.1
prunus_persica Prupe.3G031700_v2.0.a1
pyrus_communis pycom09g09100 pycom17g14630
rosa_chinensis RchiOBHm_Chr2g0147731
rosa_laevigata RLG00000020273
rosa_multiflora Rmu_sc0000308.1_g000023
rosa_roxburghii Rroxscaffold_2G00099370
rosa_rugosa Rorug02G0401400
rosa_samantha Rh2AG458500 Rh2BG471600 Rh2CG445800 Rh2DG480500
rosa_wichuraiana Rw2G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 345
AciI CCGC 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 346
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 24
AluBI AGCT 2 cut(s) 32, 147
AluI AGCT 2 cut(s) 32, 147
Alw26I GTCTC 2 cut(s) 103, 267
ApeKI GCWGC 4 cut(s) 29, 163, 258, 335
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AspLEI GCGC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 151
AsuNHI GCTAGC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 345
BauI CACGAG 1 cut(s) 169
BbvI GCAGC 4 cut(s) 41, 175, 270, 347
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 333
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 103, 267
BfaI CTAG 3 cut(s) 308, 332, 405
BfmI CTRYAG 1 cut(s) 142
BfoI RGCGCY 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 4 cut(s) 30, 164, 259, 336
BlsI GCNGC 4 cut(s) 31, 165, 260, 337
Bme1390I CCNGG 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 391
BmtI GCTAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 370
Bse8I GATNNNNATC 1 cut(s) 381
BseGI GGATG 3 cut(s) 142, 298, 382
BseJI GATNNNNATC 1 cut(s) 381
BseMI GCAATG 1 cut(s) 370
BseXI GCAGC 4 cut(s) 41, 175, 270, 347
BshNI GGYRCC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 151
BslFI GGGAC 1 cut(s) 57
BsmAI GTCTC 2 cut(s) 103, 267
BsmFI GGGAC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 347
BspMI ACCTGC 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 370
BsrGI TGTACA 1 cut(s) 234
BssMI GATC 1 cut(s) 157
BssNI GRCGYC 1 cut(s) 346
BssSI CACGAG 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 187, 333
BstDEI CTNAG 2 cut(s) 321, 370
BstF5I GGATG 3 cut(s) 142, 298, 382
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 103, 267
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 5 cut(s) 160, 195, 267, 354, 394
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 4 cut(s) 41, 175, 270, 347
BtsCI GGATG 3 cut(s) 142, 298, 382
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 187, 333
CfoI GCGC 1 cut(s) 348
Csp6I GTAC 1 cut(s) 235
CviAII CATG 1 cut(s) 186
CviJI RGCY 5 cut(s) 32, 141, 147, 213, 314
CviKI_1 RGCY 5 cut(s) 32, 141, 147, 213, 314
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 2 cut(s) 321, 370
DinI GGCGCC 1 cut(s) 347
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 247
EcoRV GATATC 1 cut(s) 247
EgeI GGCGCC 1 cut(s) 347
EheI GGCGCC 1 cut(s) 347
FaeI CATG 1 cut(s) 189
FaiI YATR 7 cut(s) 187, 196, 231, 233, 263, 340, 342
FaqI GGGAC 1 cut(s) 57
FatI CATG 1 cut(s) 185
FauI CCCGC 1 cut(s) 133
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 30, 164, 259, 336
FokI GGATG 3 cut(s) 149, 305, 389
Fsp4HI GCNGC 4 cut(s) 30, 164, 259, 336
FspBI CTAG 3 cut(s) 308, 332, 405
GlaI GCGC 1 cut(s) 347
GluI GCNGC 4 cut(s) 30, 164, 259, 336
HaeII RGCGCY 1 cut(s) 349
HapII CCGG 1 cut(s) 151
HhaI GCGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 346
Hin1II CATG 1 cut(s) 189
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 2 cut(s) 117, 399
HpaII CCGG 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 251
HpyCH4V TGCA 4 cut(s) 198, 258, 357, 382
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 195, 267, 354, 394
HpyF3I CTNAG 2 cut(s) 321, 370
Hsp92I GRCGYC 1 cut(s) 346
Hsp92II CATG 1 cut(s) 189
HspAI GCGC 1 cut(s) 346
KasI GGCGCC 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 114, 164, 262
Lsp1109I GCAGC 4 cut(s) 41, 175, 270, 347
LweI GCATC 1 cut(s) 391
MaeI CTAG 3 cut(s) 308, 332, 405
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 85
Mly113I GGCGCC 1 cut(s) 346
MnlI CCTC 4 cut(s) 217, 233, 304, 367
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 2 cut(s) 32, 128
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 151
MwoI GCNNNNNNNGC 5 cut(s) 160, 195, 267, 354, 394
NarI GGCGCC 1 cut(s) 346
NciI CCSGG 1 cut(s) 151
NdeII GATC 1 cut(s) 157
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 1 cut(s) 347
NmeAIII GCCGAG 1 cut(s) 296
NspI RCATGY 1 cut(s) 189
PaeI GCATGC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 117, 399
PkrI GCNGC 4 cut(s) 31, 165, 260, 337
PluTI GGCGCC 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 4 cut(s) 30, 164, 259, 336
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 151
SetI ASST 4 cut(s) 34, 103, 149, 228
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 142
SfoI GGCGCC 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SphI GCATGC 1 cut(s) 189
SsiI CCGC 1 cut(s) 126
SspDI GGCGCC 1 cut(s) 345
SspI AATATT 1 cut(s) 420
SspMI CTAG 3 cut(s) 308, 332, 405
StyD4I CCNGG 1 cut(s) 149
TaqII GACCGA 1 cut(s) 127
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 2 cut(s) 117, 399
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 4 cut(s) 29, 163, 258, 335
TspDTI ATGAA 2 cut(s) 17, 309
TspGWI ACGGA 1 cut(s) 149
XceI RCATGY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XspI CTAG 3 cut(s) 308, 332, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.