pycom09g09100

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012920
Physical Location & Seq
Forward (+)
7248766 .. 7249622
857 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09100.2

Sequence Viewer

Length: 531 bp
ATGGTTTCCAAGTTAAAGAGACCCTGCAACTTGATTGAGCCAGCTGCCCATAAGCTGGGCATCAGTGATAAAACTAGCCATAGCAGCTCAGTGGCTGTTGGGTTGGGAATCCTTGTACAGATCTCACAAAGAAATAAGTCAAATATCATTGAGAAATCTGCTTTAAGACTGAGCCAATCCACAACCTGCAGCTCCCTTGAGAAATTCTCTTGCTTTCTTAAAACATGTCATTTATGCAACAAGGGATTAAGCCTTGATGAAGAGGTCTACATGTACAGAGGTGATCTAGGTTTTTGCAGTATAGAGTGCAGGAACAGGCAGATTGTTATTGATGACAGGAGAGAATTAGAGGCTTCTACCAAGCAAATGCTAAAATCTTATAGGCGTGACCTTTATCGTTGCAACACTCCTAAGAGTAGTAATACTAACACTAGTAGACGTGGCGCGGCCTCTCACAACACTAATGTCTTCGAAGATGTACATCTACAACAAGAGAAAACCACACACCACAGAAAGATATTTGCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

9.46

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53885 AT1G53903
fragaria_vesca FvH4_6g35720
malus_domestica MD09G1173600.v1.1 MD17G1153400.v1.1
prunus_persica Prupe.3G031700_v2.0.a1
pyrus_communis pycom09g09100 pycom17g14630
rosa_chinensis RchiOBHm_Chr2g0147731
rosa_laevigata RLG00000020273
rosa_multiflora Rmu_sc0000308.1_g000023
rosa_roxburghii Rroxscaffold_2G00099370
rosa_rugosa Rorug02G0401400
rosa_samantha Rh2AG458500 Rh2BG471600 Rh2CG445800 Rh2DG480500
rosa_wichuraiana Rw2G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 2 cut(s) 267, 436
AccII CGCG 1 cut(s) 446
AciI CCGC 1 cut(s) 446
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 3 cut(s) 117, 275, 480
AfiI CCNNNNNNNGG 1 cut(s) 55
AflIII ACRYGT 2 cut(s) 224, 270
AhlI ACTAGT 1 cut(s) 431
AjiI CACGTC 1 cut(s) 440
AluBI AGCT 4 cut(s) 44, 55, 87, 192
AluI AGCT 4 cut(s) 44, 55, 87, 192
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 3 cut(s) 44, 84, 189
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 460
BbvI GCAGC 3 cut(s) 31, 96, 201
BcoDI GTCTC 1 cut(s) 13
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 3 cut(s) 75, 287, 432
BfmI CTRYAG 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 194
BglII AGATCT 1 cut(s) 120
BisI GCNGC 4 cut(s) 45, 85, 190, 447
BlsI GCNGC 4 cut(s) 46, 86, 191, 448
BmgBI CACGTC 1 cut(s) 440
BmsI GCATC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 191, 223
Bpu14I TTCGAA 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 480
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 102, 161
BseXI GCAGC 3 cut(s) 31, 96, 201
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 449
Bso31I GGTCTC 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 471
Bsp1407I TGTACA 3 cut(s) 115, 273, 478
Bsp143I GATC 2 cut(s) 120, 283
BspACI CCGC 1 cut(s) 446
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 101, 162
BspFNI CGCG 1 cut(s) 446
BspMAI CTGCAG 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 13
BsrGI TGTACA 3 cut(s) 115, 273, 478
BssMI GATC 2 cut(s) 120, 283
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 3 cut(s) 115, 273, 478
BstBI TTCGAA 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 88, 170, 411
BstFNI CGCG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 2 cut(s) 123, 286
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 120, 283
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 2 cut(s) 228, 274
BstSFI CTRYAG 1 cut(s) 187
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 3 cut(s) 31, 96, 201
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 449
BtrI CACGTC 1 cut(s) 440
BtsIMutI CAGTG 2 cut(s) 70, 96
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 446
Csp6I GTAC 3 cut(s) 116, 274, 479
CviAII CATG 2 cut(s) 225, 271
CviQI GTAC 3 cut(s) 116, 274, 479
DdeI CTNAG 3 cut(s) 88, 170, 411
DpnI GATC 2 cut(s) 122, 285
DpnII GATC 2 cut(s) 120, 283
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 13
FaeI CATG 2 cut(s) 228, 274
FaiI YATR 7 cut(s) 51, 81, 226, 235, 272, 302, 381
FatI CATG 2 cut(s) 224, 270
FblI GTMKAC 2 cut(s) 267, 436
Fnu4HI GCNGC 4 cut(s) 45, 85, 190, 447
Fsp4HI GCNGC 4 cut(s) 45, 85, 190, 447
FspBI CTAG 3 cut(s) 75, 287, 432
GlaI GCGC 1 cut(s) 445
GluI GCNGC 4 cut(s) 45, 85, 190, 447
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 449
HhaI GCGC 1 cut(s) 446
Hin1II CATG 2 cut(s) 228, 274
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 268, 437
Hpy8I GTNNAC 2 cut(s) 268, 437
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 7 cut(s) 27, 189, 237, 297, 309, 402, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 3 cut(s) 88, 170, 411
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 2 cut(s) 228, 274
HspAI GCGC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 120, 283
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 7 cut(s) 37, 41, 54, 199, 295, 301, 322
Lsp1109I GCAGC 3 cut(s) 31, 96, 201
LweI GCATC 1 cut(s) 69
MaeI CTAG 3 cut(s) 75, 287, 432
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 386
MalI GATC 2 cut(s) 122, 285
MboI GATC 2 cut(s) 120, 283
MboII GAAGA 3 cut(s) 272, 460, 485
MflI RGATCY 1 cut(s) 120
MluCI AATT 2 cut(s) 203, 344
MnlI CCTC 4 cut(s) 256, 272, 343, 460
MseI TTAA 4 cut(s) 14, 164, 219, 248
MspA1I CMGCKG 1 cut(s) 44
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 2 cut(s) 120, 283
NlaIII CATG 2 cut(s) 228, 274
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 2 cut(s) 228, 274
NspV TTCGAA 1 cut(s) 471
PciI ACATGT 2 cut(s) 224, 270
PfeI GAWTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 4 cut(s) 46, 86, 191, 448
PscI ACATGT 2 cut(s) 224, 270
PspFI CCCAGC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 117, 275, 480
RsaNI GTAC 3 cut(s) 116, 274, 479
SaqAI TTAA 4 cut(s) 14, 164, 219, 248
SatI GCNGC 4 cut(s) 45, 85, 190, 447
Sau3AI GATC 2 cut(s) 120, 283
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 2 cut(s) 203, 344
SsiI CCGC 1 cut(s) 446
SspMI CTAG 3 cut(s) 75, 287, 432
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 471
TasI AATT 2 cut(s) 203, 344
TatI WGTACW 3 cut(s) 115, 273, 478
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 4 cut(s) 14, 164, 219, 248
Tru9I TTAA 4 cut(s) 14, 164, 219, 248
TscAI CASTG 2 cut(s) 70, 96
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 44, 84, 189
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 2 cut(s) 70, 96
Van91I CCANNNNNTGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 203
XceI RCATGY 2 cut(s) 228, 274
XmiI GTMKAC 2 cut(s) 267, 436
XspI CTAG 3 cut(s) 75, 287, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.