MD09G1173600.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012920
Physical Location & Seq
Forward (+)
14718098 .. 14719209
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1173600.v1.1.491

Sequence Viewer

Length: 531 bp
ATGGTTTCCAAGTTCAAGAGACCCTGCAACTTGATTGAGCCAGCTGCCCATAAGCTGGGCATCAGTGATAAAACCAGCCATACCAGCTCAGTGGCTGTTGGGTTGGGAATCCTTGTACAGATCTCACAAAGAAATAAGTCAAATATCATTGAGAAATCTGCTTTAAGACTGAGCCAATCCACAACCTGCAGCTCCCTTGAGAAATTCTCTTGCTTTCTTAAAACATGTCATTTATGCAACAAGGGATTAAGCCTTGATGAAGAGGTCTACATGTACAGAGGTGATCTAGGTTTTTGCAGTATAGAGTGCAGGAACAGGCAGATTGTTATTGATGACAGGAGAGAATTAGATGCTTCTACCAAGCAAATGCTAAAATCTTATAGGCGTGACCCTTATCGTTGCAGCACTCCTAAGAGTAGTAATACTAACACTAGTAGGCGTGGCGCGGCCTCTCGCAACACTAATGTCTTCGAAGATGCACATCTACAACAAGAGAAAACCACACATCACAGAAAGATATTTGCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

177

Amino Acids

19.93

Weight (kDa)

9.55

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 69 - 113 6.3e-18 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53885 AT1G53903
fragaria_vesca FvH4_6g35720
malus_domestica MD09G1173600.v1.1 MD17G1153400.v1.1
prunus_persica Prupe.3G031700_v2.0.a1
pyrus_communis pycom09g09100 pycom17g14630
rosa_chinensis RchiOBHm_Chr2g0147731
rosa_laevigata RLG00000020273
rosa_multiflora Rmu_sc0000308.1_g000023
rosa_roxburghii Rroxscaffold_2G00099370
rosa_rugosa Rorug02G0401400
rosa_samantha Rh2AG458500 Rh2BG471600 Rh2CG445800 Rh2DG480500
rosa_wichuraiana Rw2G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 446
AciI CCGC 1 cut(s) 446
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 2 cut(s) 117, 275
AfiI CCNNNNNNNGG 1 cut(s) 55
AflIII ACRYGT 2 cut(s) 224, 270
AgsI TTSAA 1 cut(s) 16
AhlI ACTAGT 1 cut(s) 431
AluBI AGCT 4 cut(s) 44, 55, 87, 192
AluI AGCT 4 cut(s) 44, 55, 87, 192
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 3 cut(s) 44, 189, 402
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 460
BbvI GCAGC 3 cut(s) 31, 201, 414
BcoDI GTCTC 1 cut(s) 13
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 2 cut(s) 287, 432
BfmI CTRYAG 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 194
BglII AGATCT 1 cut(s) 120
BisI GCNGC 4 cut(s) 45, 190, 403, 447
BlsI GCNGC 4 cut(s) 46, 191, 404, 448
BmsI GCATC 3 cut(s) 69, 340, 466
BpiI GAAGAC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 191, 223
Bpu14I TTCGAA 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 480
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 102, 161
BseXI GCAGC 3 cut(s) 31, 201, 414
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 449
Bso31I GGTCTC 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 471
Bsp1407I TGTACA 2 cut(s) 115, 273
Bsp143I GATC 2 cut(s) 120, 283
BspACI CCGC 1 cut(s) 446
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 101, 162
BspFNI CGCG 1 cut(s) 446
BspMAI CTGCAG 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 13
BsrGI TGTACA 2 cut(s) 115, 273
BssMI GATC 2 cut(s) 120, 283
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 2 cut(s) 115, 273
BstBI TTCGAA 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 88, 170, 411
BstFNI CGCG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 2 cut(s) 123, 286
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 120, 283
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 2 cut(s) 228, 274
BstSFI CTRYAG 1 cut(s) 187
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 3 cut(s) 31, 201, 414
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 449
BtsIMutI CAGTG 2 cut(s) 70, 96
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 116, 274
CviAII CATG 2 cut(s) 225, 271
CviQI GTAC 2 cut(s) 116, 274
DdeI CTNAG 3 cut(s) 88, 170, 411
DpnI GATC 2 cut(s) 122, 285
DpnII GATC 2 cut(s) 120, 283
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 13
FaeI CATG 2 cut(s) 228, 274
FaiI YATR 7 cut(s) 51, 81, 226, 235, 272, 302, 381
FatI CATG 2 cut(s) 224, 270
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 45, 190, 403, 447
Fsp4HI GCNGC 4 cut(s) 45, 190, 403, 447
FspBI CTAG 2 cut(s) 287, 432
GlaI GCGC 1 cut(s) 445
GluI GCNGC 4 cut(s) 45, 190, 403, 447
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 449
HhaI GCGC 1 cut(s) 446
Hin1II CATG 2 cut(s) 228, 274
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4V TGCA 8 cut(s) 27, 189, 237, 297, 309, 402, 479, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 3 cut(s) 88, 170, 411
Hsp92II CATG 2 cut(s) 228, 274
HspAI GCGC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 120, 283
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 9 cut(s) 37, 41, 54, 88, 97, 199, 295, 301, 322
Lsp1109I GCAGC 3 cut(s) 31, 201, 414
LweI GCATC 3 cut(s) 69, 340, 466
MaeI CTAG 2 cut(s) 287, 432
MaeIII GTNAC 1 cut(s) 386
MalI GATC 2 cut(s) 122, 285
MboI GATC 2 cut(s) 120, 283
MboII GAAGA 3 cut(s) 272, 460, 485
MflI RGATCY 1 cut(s) 120
MluCI AATT 2 cut(s) 203, 344
MnlI CCTC 3 cut(s) 256, 272, 460
MseI TTAA 3 cut(s) 164, 219, 248
MspA1I CMGCKG 1 cut(s) 44
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 2 cut(s) 120, 283
NlaIII CATG 2 cut(s) 228, 274
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 2 cut(s) 228, 274
NspV TTCGAA 1 cut(s) 471
PciI ACATGT 2 cut(s) 224, 270
PfeI GAWTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 4 cut(s) 46, 191, 404, 448
PscI ACATGT 2 cut(s) 224, 270
PspFI CCCAGC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 2 cut(s) 117, 275
RsaNI GTAC 2 cut(s) 116, 274
SaqAI TTAA 3 cut(s) 164, 219, 248
SatI GCNGC 4 cut(s) 45, 190, 403, 447
Sau3AI GATC 2 cut(s) 120, 283
SetI ASST 8 cut(s) 46, 57, 89, 188, 194, 267, 283, 292
SfaNI GCATC 3 cut(s) 69, 340, 466
SfcI CTRYAG 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 2 cut(s) 203, 344
SsiI CCGC 1 cut(s) 446
SspMI CTAG 2 cut(s) 287, 432
TaqI TCGA 1 cut(s) 471
TasI AATT 2 cut(s) 203, 344
TatI WGTACW 2 cut(s) 115, 273
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 3 cut(s) 164, 219, 248
Tru9I TTAA 3 cut(s) 164, 219, 248
TscAI CASTG 2 cut(s) 70, 96
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 44, 189, 402
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 2 cut(s) 70, 96
Van91I CCANNNNNTGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 203
XceI RCATGY 2 cut(s) 228, 274
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 2 cut(s) 287, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.