Rmu_sc0000308.1_g000023

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000308.1
OG0012920
Physical Location & Seq
Reverse (-)
103914 .. 104509
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000308.1_g000023.1.cds

Sequence Viewer

Length: 495 bp
atgatttccaggttcatgaggaggcccttcaaattgattaaaaacctagtcgataagcaaagcatgaatgataagaccaagagttcaatggcagctgttgggttgggacttctccttacacagatttcacaagggaagaagtcgtcgaatatcgttgtgaaacctgccttgagactgagaatcaaacccgcggttacggatggctacagctccctgcgtgatcagcagcactcgtgttttcttaaagcatgccatttatgcaacaagggattgagccttgataaagaggtctatatgtacagaggggatatcggattttgcagcatcttgtgccgagacaggcagattgctttggatgaaatgaaagaactagaggcttccactaagaaaatgctggcagcatataggcgccgttcttgcagaagcaatgtcttagaggatgtgcatcagcaacaaaagcgaatccctagtcagcgaacaatatttgctctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

164

Amino Acids

18.75

Weight (kDa)

10.03

Isoelectric Point (pI)

60.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53885 AT1G53903
fragaria_vesca FvH4_6g35720
malus_domestica MD09G1173600.v1.1 MD17G1153400.v1.1
prunus_persica Prupe.3G031700_v2.0.a1
pyrus_communis pycom09g09100 pycom17g14630
rosa_chinensis RchiOBHm_Chr2g0147731
rosa_laevigata RLG00000020273
rosa_multiflora Rmu_sc0000308.1_g000023
rosa_roxburghii Rroxscaffold_2G00099370
rosa_rugosa Rorug02G0401400
rosa_samantha Rh2AG458500 Rh2BG471600 Rh2CG445800 Rh2DG480500
rosa_wichuraiana Rw2G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 408
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 189, 191
AcyI GRCGYC 1 cut(s) 409
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 2 cut(s) 31, 87
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 2 cut(s) 95, 210
AluI AGCT 2 cut(s) 95, 210
Alw26I GTCTC 2 cut(s) 166, 330
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 4 cut(s) 92, 226, 321, 398
ArsI GACNNNNNNTTYG 2 cut(s) 454, 486
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 408
BauI CACGAG 1 cut(s) 232
BbvI GCAGC 4 cut(s) 104, 238, 333, 410
BccI CCATC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 1 cut(s) 10
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 166, 330
BfaI CTAG 3 cut(s) 47, 371, 468
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 412
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 4 cut(s) 93, 227, 322, 399
BlsI GCNGC 4 cut(s) 94, 228, 323, 400
Bme1390I CCNGG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 2 cut(s) 333, 454
BpuEI CTTGAG 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 3 cut(s) 205, 361, 445
BseJI GATNNNNATC 1 cut(s) 444
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 4 cut(s) 104, 238, 333, 410
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 408
BslFI GGGAC 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 166, 330
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 1 cut(s) 25
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 2 cut(s) 189, 191
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 168
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 410
BspMI ACCTGC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 409
BssSI CACGAG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 409
BstAPI GCANNNNNTGC 1 cut(s) 330
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 250, 396
BstDEI CTNAG 3 cut(s) 176, 384, 433
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 205, 361, 445
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 166, 330
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 5 cut(s) 223, 258, 330, 417, 457
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 4 cut(s) 104, 238, 333, 410
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 205, 361, 445
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 250, 396
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 24
Cfr42I CCGCGG 1 cut(s) 192
Csp6I GTAC 1 cut(s) 298
CviAII CATG 3 cut(s) 16, 64, 249
CviJI RGCY 6 cut(s) 25, 95, 204, 210, 276, 377
CviKI_1 RGCY 6 cut(s) 25, 95, 204, 210, 276, 377
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 176, 384, 433
DinI GGCGCC 1 cut(s) 410
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 8
EcoRV GATATC 1 cut(s) 310
EgeI GGCGCC 1 cut(s) 410
EheI GGCGCC 1 cut(s) 410
FaeI CATG 3 cut(s) 19, 67, 252
FaiI YATR 8 cut(s) 17, 65, 250, 259, 294, 296, 403, 405
FaqI GGGAC 1 cut(s) 120
FatI CATG 3 cut(s) 15, 63, 248
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 93, 227, 322, 399
FokI GGATG 3 cut(s) 212, 368, 452
Fsp4HI GCNGC 4 cut(s) 93, 227, 322, 399
FspBI CTAG 3 cut(s) 47, 371, 468
GlaI GCGC 1 cut(s) 410
GluI GCNGC 4 cut(s) 93, 227, 322, 399
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 1 cut(s) 25
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 409
Hin1II CATG 3 cut(s) 19, 67, 252
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 2 cut(s) 180, 462
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 261, 321, 420, 445
HpyF10VI GCNNNNNNNGC 5 cut(s) 223, 258, 330, 417, 457
HpyF3I CTNAG 3 cut(s) 176, 384, 433
Hsp92I GRCGYC 1 cut(s) 409
Hsp92II CATG 3 cut(s) 19, 67, 252
HspAI GCGC 1 cut(s) 409
KasI GGCGCC 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 220
KspI CCGCGG 1 cut(s) 192
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 22, 177, 227, 325, 380
Lsp1109I GCAGC 4 cut(s) 104, 238, 333, 410
LweI GCATC 2 cut(s) 333, 454
MaeI CTAG 3 cut(s) 47, 371, 468
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 148
MluCI AATT 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 409
MnlI CCTC 6 cut(s) 12, 15, 280, 296, 367, 430
MseI TTAA 2 cut(s) 39, 243
MspA1I CMGCKG 2 cut(s) 95, 191
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 5 cut(s) 223, 258, 330, 417, 457
NarI GGCGCC 1 cut(s) 409
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 19, 67, 252
NlaIV GGNNCC 1 cut(s) 410
NmeAIII GCCGAG 1 cut(s) 359
NspI RCATGY 1 cut(s) 252
PaeI GCATGC 1 cut(s) 252
PagI TCATGA 1 cut(s) 15
PfeI GAWTC 2 cut(s) 180, 462
PkrI GCNGC 4 cut(s) 94, 228, 323, 400
PluTI GGCGCC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 410
PspPI GGNCC 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SacII CCGCGG 1 cut(s) 192
SaqAI TTAA 2 cut(s) 39, 243
SatI GCNGC 4 cut(s) 93, 227, 322, 399
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 10
SetI ASST 6 cut(s) 14, 48, 97, 166, 212, 291
SfaNI GCATC 2 cut(s) 333, 454
SfcI CTRYAG 1 cut(s) 205
SfoI GGCGCC 1 cut(s) 410
Sfr303I CCGCGG 1 cut(s) 192
SgrBI CCGCGG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SphI GCATGC 1 cut(s) 252
Sse9I AATT 1 cut(s) 32
SsiI CCGC 2 cut(s) 189, 191
SspDI GGCGCC 1 cut(s) 408
SspI AATATT 1 cut(s) 483
SspMI CTAG 3 cut(s) 47, 371, 468
StyD4I CCNGG 1 cut(s) 8
TaqI TCGA 2 cut(s) 51, 146
TasI AATT 1 cut(s) 32
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 2 cut(s) 180, 462
Tru1I TTAA 2 cut(s) 39, 243
Tru9I TTAA 2 cut(s) 39, 243
TseI GCWGC 4 cut(s) 92, 226, 321, 398
TspDTI ATGAA 4 cut(s) 4, 80, 372, 377
TspGWI ACGGA 1 cut(s) 212
XceI RCATGY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 3 cut(s) 47, 371, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.