FvH4_6g35720

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012920
Physical Location & Seq
Reverse (-)
28190180 .. 28191296
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35720.t1

Sequence Viewer

Length: 501 bp
ATGATTTCCAGGTTCATGAGGAGGCCCTTCAAATTGATTAGAAACCTAGTAGACAAGCAAAGCATGAATGATAAGACCAGGAGTACTTCAATGGCAGCTGTTGGTTTGGGACTACTACTCACACAGATTTCACAAGGGAATATGAAGTCGTCGAATATCGTTGTGAAACCAGCCTTGAGATTGAGAATCAAACCCACGGTTACGGCCGGTTGCAGCTCCCGGCGTGATCAGCAGCACTCATGTTATCTTAAAGCTTGCCATCTATGCAACAAGGGATTGAGCCTTGATAAAGAGGTCTATATGTACAGAGGGGATATCGGATTTTGCAGCATAGTGTGCCGGGACAGGCAGATTGTTATGGATGAAATGAGAGATCTAGAGGGTTCCACTAAGAAAATGCTAGCAGCATATAGGCGCCGTTCTTGCACCAGCAAAGTTTTAGAGGATGTTCATCTGCAACACGACCGAAAACCTAGTCGGCGAACAATATTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

167

Amino Acids

19.03

Weight (kDa)

10.17

Isoelectric Point (pI)

62.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 74 - 123 2e-17 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53885 AT1G53903
fragaria_vesca FvH4_6g35720
malus_domestica MD09G1173600.v1.1 MD17G1153400.v1.1
prunus_persica Prupe.3G031700_v2.0.a1
pyrus_communis pycom09g09100 pycom17g14630
rosa_chinensis RchiOBHm_Chr2g0147731
rosa_laevigata RLG00000020273
rosa_multiflora Rmu_sc0000308.1_g000023
rosa_roxburghii Rroxscaffold_2G00099370
rosa_rugosa Rorug02G0401400
rosa_samantha Rh2AG458500 Rh2BG471600 Rh2CG445800 Rh2DG480500
rosa_wichuraiana Rw2G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 415
AfaI GTAC 2 cut(s) 85, 305
AgsI TTSAA 2 cut(s) 31, 90
AjnI CCWGG 2 cut(s) 8, 77
AluBI AGCT 3 cut(s) 98, 216, 254
AluI AGCT 3 cut(s) 98, 216, 254
AoxI GGCC 2 cut(s) 23, 204
ApeKI GCWGC 5 cut(s) 95, 213, 232, 327, 404
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspLEI GCGC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 2 cut(s) 220, 341
AsuNHI GCTAGC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 414
BbvI GCAGC 5 cut(s) 107, 225, 244, 339, 416
BccI CCATC 1 cut(s) 267
BceAI ACGGC 2 cut(s) 219, 402
BciT130I CCWGG 2 cut(s) 10, 79
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 2 cut(s) 220, 341
BfaI CTAG 4 cut(s) 47, 377, 401, 474
BfoI RGCGCY 1 cut(s) 418
BglII AGATCT 1 cut(s) 373
BisI GCNGC 5 cut(s) 96, 214, 233, 328, 405
BlsI GCNGC 5 cut(s) 97, 215, 234, 329, 406
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 4 cut(s) 10, 79, 220, 341
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 385, 416
BmrFI CCNGG 4 cut(s) 10, 79, 220, 341
BmtI GCTAGC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 196
BpuMI CCSGG 2 cut(s) 220, 341
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 2 cut(s) 10, 79
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 367, 451
BseJI GATNNNNATC 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 5 cut(s) 107, 225, 244, 339, 416
Bsh1285I CGRYCG 2 cut(s) 207, 466
BshFI GGCC 2 cut(s) 25, 206
BshNI GGYRCC 1 cut(s) 414
BsiEI CGRYCG 2 cut(s) 207, 466
BsiSI CCGG 3 cut(s) 207, 220, 340
BslFI GGGAC 2 cut(s) 123, 356
BsmFI GGGAC 2 cut(s) 123, 356
BsnI GGCC 2 cut(s) 25, 206
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 2 cut(s) 226, 373
BspANI GGCC 2 cut(s) 25, 206
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 385, 416
BspOI GCTAGC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 226, 373
BssNI GRCGYC 1 cut(s) 415
Bst2UI CCWGG 2 cut(s) 10, 79
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 415
BstAPI GCANNNNNTGC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 2 cut(s) 256, 402
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 367, 451
BstH2I RGCGCY 1 cut(s) 418
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 2 cut(s) 229, 376
BstMBI GATC 2 cut(s) 226, 373
BstMCI CGRYCG 2 cut(s) 207, 466
BstMWI GCNNNNNNNGC 4 cut(s) 229, 264, 336, 423
BstNI CCWGG 2 cut(s) 10, 79
BstSCI CCNGG 4 cut(s) 8, 77, 218, 339
BstV1I GCAGC 5 cut(s) 107, 225, 244, 339, 416
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 2 cut(s) 25, 206
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 367, 451
Cac8I GCNNGC 2 cut(s) 256, 402
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 417
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 84, 304
CviAII CATG 3 cut(s) 16, 64, 240
CviJI RGCY 7 cut(s) 25, 98, 173, 206, 216, 254, 282
CviKI_1 RGCY 7 cut(s) 25, 98, 173, 206, 216, 254, 282
CviQI GTAC 2 cut(s) 84, 304
DdeI CTNAG 1 cut(s) 390
DinI GGCGCC 1 cut(s) 416
DpnI GATC 2 cut(s) 228, 375
DpnII GATC 2 cut(s) 226, 373
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
EclXI CGGCCG 1 cut(s) 204
Eco32I GATATC 1 cut(s) 316
Eco52I CGGCCG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 8, 77
EcoRV GATATC 1 cut(s) 316
EgeI GGCGCC 1 cut(s) 416
EheI GGCGCC 1 cut(s) 416
FaeI CATG 3 cut(s) 19, 67, 243
FaqI GGGAC 2 cut(s) 123, 356
FatI CATG 3 cut(s) 15, 63, 239
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 5 cut(s) 96, 214, 233, 328, 405
FokI GGATG 2 cut(s) 374, 458
Fsp4HI GCNGC 5 cut(s) 96, 214, 233, 328, 405
FspBI CTAG 4 cut(s) 47, 377, 401, 474
GlaI GCGC 1 cut(s) 416
GluI GCNGC 5 cut(s) 96, 214, 233, 328, 405
HaeII RGCGCY 1 cut(s) 418
HaeIII GGCC 2 cut(s) 25, 206
HapII CCGG 3 cut(s) 207, 220, 340
HhaI GCGC 1 cut(s) 417
Hin1I GRCGYC 1 cut(s) 415
Hin1II CATG 3 cut(s) 19, 67, 243
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 1 cut(s) 186
HpaII CCGG 3 cut(s) 207, 220, 340
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 2 cut(s) 16, 377
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 5 cut(s) 213, 267, 327, 426, 457
HpyF10VI GCNNNNNNNGC 4 cut(s) 229, 264, 336, 423
HpyF3I CTNAG 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 415
Hsp92II CATG 3 cut(s) 19, 67, 243
HspAI GCGC 1 cut(s) 415
KasI GGCGCC 1 cut(s) 414
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 2 cut(s) 226, 373
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 9 cut(s) 22, 64, 91, 183, 220, 233, 331, 353, 442
Lsp1109I GCAGC 5 cut(s) 107, 225, 244, 339, 416
MaeI CTAG 4 cut(s) 47, 377, 401, 474
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 228, 375
MboI GATC 2 cut(s) 226, 373
MflI RGATCY 1 cut(s) 373
MluCI AATT 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 415
MnlI CCTC 6 cut(s) 12, 15, 286, 302, 373, 436
MseI TTAA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 207, 220, 340
MspR9I CCNGG 4 cut(s) 10, 79, 220, 341
MvaI CCWGG 2 cut(s) 10, 79
MwoI GCNNNNNNNGC 4 cut(s) 229, 264, 336, 423
NarI GGCGCC 1 cut(s) 415
NciI CCSGG 2 cut(s) 220, 341
NdeII GATC 2 cut(s) 226, 373
NheI GCTAGC 1 cut(s) 400
NlaIII CATG 3 cut(s) 19, 67, 243
NlaIV GGNNCC 2 cut(s) 385, 416
PagI TCATGA 1 cut(s) 15
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 5 cut(s) 97, 215, 234, 329, 406
PluTI GGCGCC 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 8, 77
PspGI CCWGG 2 cut(s) 8, 77
PspN4I GGNNCC 2 cut(s) 385, 416
PspPI GGNCC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 85, 305
RsaNI GTAC 2 cut(s) 84, 304
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 5 cut(s) 96, 214, 233, 328, 405
Sau3AI GATC 2 cut(s) 226, 373
Sau96I GGNCC 1 cut(s) 24
ScaI AGTACT 1 cut(s) 85
ScrFI CCNGG 4 cut(s) 10, 79, 220, 341
SetI ASST 7 cut(s) 14, 48, 100, 218, 256, 297, 475
SfoI GGCGCC 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 1 cut(s) 32
SspDI GGCGCC 1 cut(s) 414
SspI AATATT 1 cut(s) 489
SspMI CTAG 4 cut(s) 47, 377, 401, 474
StyD4I CCNGG 4 cut(s) 8, 77, 218, 339
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 152
TaqII GACCGA 1 cut(s) 480
TasI AATT 1 cut(s) 32
TatI WGTACW 2 cut(s) 83, 303
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 5 cut(s) 95, 213, 232, 327, 404
TspDTI ATGAA 5 cut(s) 4, 80, 158, 378, 440
XbaI TCTAGA 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 4 cut(s) 47, 377, 401, 474
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.