MD17G1153400.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012920
Physical Location & Seq
Reverse (-)
14473187 .. 14474430
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1153400.v1.1.491

Sequence Viewer

Length: 705 bp
ATGGGATCCATCTCCTATAAATATTATATATCTTCTGTGTGGACGGAAGACTTGTATAAGTTGTATGGTGCTTTTAAATATCTAATATCTCAACCTTGTAAACTTCACATCCCTCTTCAGTTTTCTTCTTCACAGCCCTCTTCAGTTTTCGTCTTCTTCTCTCTAACCCCCCCACAAACGATGGTTTCCAAGTTCAAGAGGCCCTGCAACTTGATCGAGCCAGCTGCCCATAAGCTGGGCATCAGTGATAAAACCAGCCATGGGAGCTCAGTGGCTGTTGGATTGGGAATCCTTGTACAGAATTCACAAAGAAATAAGACAAATATCATTGAGAAATCTGCATTAAGACTGAGCCAATCCACAACCTGCAGCTCCCTCGAGCAATTCTCTTGCTTTCTTAAAACATGTCACTTATGCAACAAGGGATTAAGCCTTGATAGAGAGGTCTACATGTACAGAGGTGATCTAGGTTTTTGCAGCATAGAGTGCAGGAACAGACAGATTGTTATTGATGACATGAAGGAATTAGAGGCTTCTACCAAGCAAATGATAACATCCTATAGGCGTGGCCTATATCGTTGCAGCCTTACTAAGAGTAGTAATGCTAACACTAGTAGGCGTGGCTCTCGCAACACTAATGTTTTTGAAGATGTACATCTGCAACAGGAGAAAACCAGACATCAAAGAAAGATATTTGTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

235

Amino Acids

26.67

Weight (kDa)

9.54

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 128 - 173 8.7e-18 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53885 AT1G53903
fragaria_vesca FvH4_6g35720
malus_domestica MD09G1173600.v1.1 MD17G1153400.v1.1
prunus_persica Prupe.3G031700_v2.0.a1
pyrus_communis pycom09g09100 pycom17g14630
rosa_chinensis RchiOBHm_Chr2g0147731
rosa_laevigata RLG00000020273
rosa_multiflora Rmu_sc0000308.1_g000023
rosa_roxburghii Rroxscaffold_2G00099370
rosa_rugosa Rorug02G0401400
rosa_samantha Rh2AG458500 Rh2BG471600 Rh2CG445800 Rh2DG480500
rosa_wichuraiana Rw2G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 447
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 2 cut(s) 101, 126
AfaI GTAC 4 cut(s) 297, 455, 654, 699
AfiI CCNNNNNNNGG 2 cut(s) 235, 261
AflIII ACRYGT 2 cut(s) 404, 450
AgsI TTSAA 2 cut(s) 196, 647
AhlI ACTAGT 1 cut(s) 611
AluBI AGCT 4 cut(s) 224, 235, 267, 372
AluI AGCT 4 cut(s) 224, 235, 267, 372
Alw21I GWGCWC 1 cut(s) 269
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 2 cut(s) 200, 568
ApeKI GCWGC 4 cut(s) 224, 369, 477, 582
ApoI RAATTY 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 377
BamHI GGATCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 54, 145
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 4 cut(s) 211, 381, 489, 594
BccI CCATC 2 cut(s) 17, 175
BcgI CGANNNNNNTGC 6 cut(s) 196, 206, 230, 240, 358, 392
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 2 cut(s) 467, 612
BfmI CTRYAG 2 cut(s) 367, 559
BfuAI ACCTGC 1 cut(s) 374
BisI GCNGC 4 cut(s) 225, 370, 478, 583
BlsI GCNGC 4 cut(s) 226, 371, 479, 584
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 2 cut(s) 54, 145
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BsaBI GATNNNNATC 1 cut(s) 654
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 261
Bse8I GATNNNNATC 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 108, 554
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 2 cut(s) 235, 261
BseMII CTCAG 2 cut(s) 282, 341
BseXI GCAGC 4 cut(s) 211, 381, 489, 594
BseYI CCCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 508
BshFI GGCC 2 cut(s) 202, 570
BsiHKAI GWGCWC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 235, 261
BsnI GGCC 2 cut(s) 202, 570
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 269
Bsp1407I TGTACA 3 cut(s) 295, 453, 652
Bsp143I GATC 3 cut(s) 5, 213, 463
Bsp19I CCATGG 1 cut(s) 259
BspANI GGCC 2 cut(s) 202, 570
BspCNI CTCAG 2 cut(s) 281, 342
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 371
BspMI ACCTGC 1 cut(s) 374
BspPI GGATC 1 cut(s) 13
BsrGI TGTACA 3 cut(s) 295, 453, 652
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 3 cut(s) 5, 213, 463
BssT1I CCWWGG 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 120, 145
BstAPI GCANNNNNTGC 1 cut(s) 486
BstAUI TGTACA 3 cut(s) 295, 453, 652
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 3 cut(s) 268, 350, 591
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 108, 554
BstKTI GATC 3 cut(s) 8, 216, 466
BstMBI GATC 3 cut(s) 5, 213, 463
BstMWI GCNNNNNNNGC 2 cut(s) 264, 486
BstNSI RCATGY 2 cut(s) 408, 454
BstSFI CTRYAG 2 cut(s) 367, 559
BstV1I GCAGC 4 cut(s) 211, 381, 489, 594
BstV2I GAAGAC 2 cut(s) 54, 145
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 2 cut(s) 202, 570
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 2 cut(s) 108, 554
BtsIMutI CAGTG 2 cut(s) 250, 276
BveI ACCTGC 1 cut(s) 374
Cac8I GCNNGC 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 4 cut(s) 296, 454, 653, 698
CviAII CATG 4 cut(s) 260, 405, 451, 517
CviQI GTAC 4 cut(s) 296, 454, 653, 698
DdeI CTNAG 3 cut(s) 268, 350, 591
DpnI GATC 3 cut(s) 7, 215, 465
DpnII GATC 3 cut(s) 5, 213, 463
DraI TTTAAA 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 120, 145
EarI CTCTTC 2 cut(s) 120, 145
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 2 cut(s) 101, 126
Eco88I CYCGRG 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 4 cut(s) 263, 408, 454, 520
FatI CATG 4 cut(s) 259, 404, 450, 516
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 4 cut(s) 225, 370, 478, 583
FokI GGATG 2 cut(s) 95, 541
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 225, 370, 478, 583
FspBI CTAG 2 cut(s) 467, 612
GluI GCNGC 4 cut(s) 225, 370, 478, 583
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 2 cut(s) 202, 570
Hin1II CATG 4 cut(s) 263, 408, 454, 520
HinfI GANTC 1 cut(s) 288
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 3 cut(s) 42, 101, 448
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 3 cut(s) 42, 101, 448
HpyAV CCTTC 1 cut(s) 514
HpyCH4V TGCA 8 cut(s) 207, 341, 369, 417, 477, 489, 582, 661
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 486
HpyF3I CTNAG 3 cut(s) 268, 350, 591
Hsp92II CATG 4 cut(s) 263, 408, 454, 520
Kzo9I GATC 3 cut(s) 5, 213, 463
LmnI GCTCC 2 cut(s) 264, 377
LpnPI CCDG 8 cut(s) 217, 221, 234, 268, 379, 475, 650, 688
Lsp1109I GCAGC 4 cut(s) 211, 381, 489, 594
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 467, 612
MaeIII GTNAC 1 cut(s) 407
MalI GATC 3 cut(s) 7, 215, 465
MboI GATC 3 cut(s) 5, 213, 463
MboII GAAGA 9 cut(s) 24, 59, 107, 117, 120, 132, 145, 148, 659
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 3 cut(s) 301, 383, 524
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 7 cut(s) 123, 148, 192, 386, 436, 452, 523
MseI TTAA 4 cut(s) 75, 344, 399, 428
MspA1I CMGCKG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 264, 486
NcoI CCATGG 1 cut(s) 259
NdeII GATC 3 cut(s) 5, 213, 463
NlaIII CATG 4 cut(s) 263, 408, 454, 520
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 2 cut(s) 408, 454
PaeR7I CTCGAG 1 cut(s) 377
PciI ACATGT 2 cut(s) 404, 450
PfeI GAWTC 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 4 cut(s) 226, 371, 479, 584
PscI ACATGT 2 cut(s) 404, 450
Psp124BI GAGCTC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 201
PspXI VCTCGAGB 1 cut(s) 377
PstI CTGCAG 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 4 cut(s) 297, 455, 654, 699
RsaNI GTAC 4 cut(s) 296, 454, 653, 698
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 4 cut(s) 75, 344, 399, 428
SatI GCNGC 4 cut(s) 225, 370, 478, 583
Sau3AI GATC 3 cut(s) 5, 213, 463
Sau96I GGNCC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 269
SetI ASST 9 cut(s) 97, 226, 237, 269, 368, 374, 447, 463, 472
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 2 cut(s) 367, 559
Sfr274I CTCGAG 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 3 cut(s) 301, 383, 524
SspI AATATT 1 cut(s) 23
SspMI CTAG 2 cut(s) 467, 612
SstI GAGCTC 1 cut(s) 269
StyI CCWWGG 1 cut(s) 259
TaqI TCGA 2 cut(s) 216, 378
TasI AATT 3 cut(s) 301, 383, 524
TatI WGTACW 4 cut(s) 295, 453, 652, 697
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 4 cut(s) 75, 344, 399, 428
Tru9I TTAA 4 cut(s) 75, 344, 399, 428
TscAI CASTG 2 cut(s) 250, 276
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 224, 369, 477, 582
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 533
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 2 cut(s) 250, 276
Van91I CCANNNNNTGG 1 cut(s) 235
XapI RAATTY 1 cut(s) 301
XceI RCATGY 2 cut(s) 408, 454
XhoI CTCGAG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 2 cut(s) 467, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.