Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008519

Physical Location & Seq

Genomic Coordinates Forward (+)

20134844 .. 20137013

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTGTGGAGGAGCTATAATATCCGATTTCATTCCACCGCCGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTGAAGAAGAATTTGAAAGGATCGAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTCGATTTTGACGCTGAGTTCGAAGCTGATTTCCAAGGTTTCAAAGATGATTCGTCTATCGATTGCGATGATGATTTCGACGTCGGTGATGTTTTCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCAAAACCCGCCGTCTCCGCCGCTGCGGAAGGTTCAGTTTTTGGTAAGAAAGTTACTGGCTTGGATGGGGACGCTGAGAAATCTGCAAATAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGGGAAAATGGGCTGCTGAGATACGTGATCCAAGGGAAGGTGCTAGAATCTGGCTTGGAACGTTCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGAATCCGTGGATCTAAAGCTAAGGTGAATTTCCCTGAAGAAAACATGAAGGCTAATTCTCAGAAACGCTCTGTGAAGGCTAATCTTCAGAAACCAGTGGCTAAACCTAACCCTAACCCAAGTCCAGCTTTGGTTCAGAACTCGAACATCTCCTTTGAAAATATGTGTTTCATGGAGGAGAAACACCAAGTGAGCAACAACAACAACAACCAGTTTGGGATGACAAACTCCGTTGATGCTGGATGTAATGGGTATCAGTATTTCAGCTCTGACCAGGGTAGTAATTCTTTCGATTGTTCGGAGTTTGGTTGGAGCGATCAAGCTCCGATAACTCCCGACATCTCTTCTGCGGTTATCAACAACAACAACTCAGCTCTGTTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGAGACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGTAACGACTCAGGACAATGGTGCAAACCCTATGGACCTATGGAGTATTGATGAAATTCATTCCATGATTGGAGGAGTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0008150 GO:0009593 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0036293 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0060255 GO:0065007 GO:0070482 GO:0070483 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

358

Amino Acids

39.8

Weight (kDa)

5.19

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 173	6.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53910 AT1G53910 AT1G53910 AT3G14230 AT3G14230 AT3G14230
fragaria_vesca	FvH4_6g35670
malus_domestica	MD09G1174400.v1.1 MD17G1152400.v1.1
prunus_persica	Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1
pyrus_communis	pycom09g09150 pycom17g14570
rosa_chinensis	RchiOBHm_Chr2g0147651
rosa_laevigata	RLG00000020267
rosa_roxburghii	Rroxscaffold_2G00099420
rosa_rugosa	Rorug02G0400600
rosa_samantha	Rh2AG458000 Rh2BG470600 Rh2CG445400 Rh2DG479800
rosa_wichuraiana	Rw2G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
AccII	CGCG	1 cut(s)	505
AciI	CCGC	7 cut(s)	38, 273, 282, 285, 290, 505, 857
AclI	AACGTT	1 cut(s)	458
AclWI	GGATC	4 cut(s)	87, 109, 419, 526
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	4 cut(s)	91, 130, 535, 1047
AcuI	CTGAAG	3 cut(s)	104, 564, 578
AcyI	GRCGYC	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	697
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	97, 178, 463, 665
AjnI	CCWGG	1 cut(s)	780
Alw26I	GTCTC	3 cut(s)	51, 283, 929
AlwI	GGATC	4 cut(s)	87, 109, 419, 526
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	5 cut(s)	287, 410, 479, 497, 500
ApoI	RAATTY	4 cut(s)	91, 130, 535, 1047
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
Asp700I	GAANNNNTTC	2 cut(s)	134, 245
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	1027
AsuHPI	GGTGA	2 cut(s)	233, 544
AsuII	TTCGAA	2 cut(s)	128, 156
AvaII	GGWCC	1 cut(s)	1027
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BbsI	GAAGAC	1 cut(s)	1063
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	5 cut(s)	274, 397, 466, 484, 512
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	2 cut(s)	36, 260
BciT130I	CCWGG	1 cut(s)	782
BcoDI	GTCTC	3 cut(s)	51, 283, 929
BfaI	CTAG	3 cut(s)	60, 441, 483
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	6 cut(s)	285, 288, 411, 480, 498, 501
BlsI	GCNGC	6 cut(s)	286, 289, 412, 481, 499, 502
Bme1390I	CCNGG	1 cut(s)	782
Bme18I	GGWCC	1 cut(s)	1027
BmgT120I	GGNCC	1 cut(s)	1027
BmrFI	CCNGG	1 cut(s)	782
BmsI	GCATC	3 cut(s)	484, 733, 979
BpiI	GAAGAC	1 cut(s)	1063
Bpu10I	CCTNAGC	2 cut(s)	471, 528
Bpu14I	TTCGAA	2 cut(s)	128, 156
BpuEI	CTTGAG	1 cut(s)	902
Bsa29I	ATCGAT	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	7 cut(s)	41, 169, 376, 395, 428, 514, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	247, 277, 499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	4 cut(s)	325, 602, 718, 975
BseBI	CCWGG	1 cut(s)	782
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	7 cut(s)	41, 169, 376, 395, 428, 514, 781
BseGI	GGATG	3 cut(s)	334, 732, 755
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	7 cut(s)	141, 330, 405, 462, 581, 891, 1016
BseNI	ACTGG	4 cut(s)	325, 602, 718, 975
BseRI	GAGGAG	2 cut(s)	24, 698
BseXI	GCAGC	5 cut(s)	274, 397, 466, 484, 512
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	76
BshVI	ATCGAT	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	347, 974
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	3 cut(s)	51, 283, 929
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	347, 974
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	51
Bsp119I	TTCGAA	2 cut(s)	128, 156
Bsp143I	GATC	5 cut(s)	79, 101, 424, 518, 823
BspACI	CCGC	7 cut(s)	38, 273, 282, 285, 290, 505, 857
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	7 cut(s)	142, 331, 406, 463, 580, 890, 1015
BspDI	ATCGAT	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	505
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	4 cut(s)	87, 109, 419, 526
BspT104I	TTCGAA	2 cut(s)	128, 156
BspTNI	GGTCTC	1 cut(s)	51
BsrI	ACTGG	4 cut(s)	325, 602, 718, 975
BssECI	CCNNGG	7 cut(s)	41, 169, 376, 395, 428, 514, 781
BssMI	GATC	5 cut(s)	79, 101, 424, 518, 823
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	3 cut(s)	169, 395, 428
Bst2UI	CCWGG	1 cut(s)	782
Bst6I	CTCTTC	2 cut(s)	353, 856
BstACI	GRCGYC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	422
BstBI	TTCGAA	2 cut(s)	128, 156
BstDEI	CTNAG	9 cut(s)	150, 339, 414, 471, 528, 567, 877, 909, 1002
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	3 cut(s)	334, 732, 755
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	5 cut(s)	82, 104, 427, 521, 826
BstMAI	GTCTC	3 cut(s)	51, 283, 929
BstMBI	GATC	5 cut(s)	79, 101, 424, 518, 823
BstMWI	GCNNNNNNNGC	5 cut(s)	281, 476, 485, 494, 905
BstNI	CCWGG	1 cut(s)	782
BstSCI	CCNGG	1 cut(s)	780
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	5 cut(s)	274, 397, 466, 484, 512
BstV2I	GAAGAC	1 cut(s)	1063
BstX2I	RGATCY	2 cut(s)	79, 518
BstYI	RGATCY	2 cut(s)	79, 518
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	76
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	334, 732, 755
BtsIMutI	CAGTG	3 cut(s)	609, 951, 968
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	1027
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	3 cut(s)	155, 344, 971
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	3 cut(s)	553, 679, 1057
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	9 cut(s)	150, 339, 414, 471, 528, 567, 877, 909, 1002
DpnI	GATC	5 cut(s)	81, 103, 426, 520, 825
DpnII	GATC	5 cut(s)	79, 101, 424, 518, 823
DraIII	CACNNNGTG	1 cut(s)	697
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	2 cut(s)	353, 856
EarI	CTCTTC	2 cut(s)	353, 856
EciI	GGCGGA	1 cut(s)	271
Eco130I	CCWWGG	3 cut(s)	169, 395, 428
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	1027
Eco57I	CTGAAG	3 cut(s)	104, 564, 578
EcoRII	CCWGG	1 cut(s)	780
EcoT14I	CCWWGG	3 cut(s)	169, 395, 428
ErhI	CCWWGG	3 cut(s)	169, 395, 428
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	3 cut(s)	556, 682, 1060
FaiI	YATR	8 cut(s)	17, 554, 671, 680, 926, 1025, 1033, 1058
FalI	AAGNNNNNCTT	2 cut(s)	619, 651
FaqI	GGGAC	2 cut(s)	347, 974
FatI	CATG	3 cut(s)	552, 678, 1056
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	6 cut(s)	285, 288, 411, 480, 498, 501
FokI	GGATG	3 cut(s)	341, 739, 762
Fsp4HI	GCNGC	6 cut(s)	285, 288, 411, 480, 498, 501
FspBI	CTAG	3 cut(s)	60, 441, 483
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	6 cut(s)	285, 288, 411, 480, 498, 501
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	3 cut(s)	155, 344, 971
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	556, 682, 1060
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	8 cut(s)	121, 185, 262, 367, 444, 510, 1000, 1068
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	233, 544
Hpy188I	TCNGA	9 cut(s)	25, 84, 570, 597, 645, 778, 808, 834, 1076
Hpy188III	TCNNGA	4 cut(s)	463, 842, 934, 1004
Hpy99I	CGWCG	2 cut(s)	218, 221
HpyAV	CCTTC	4 cut(s)	287, 428, 550, 577
HpyCH4IV	ACGT	4 cut(s)	216, 391, 421, 458
HpyCH4V	TGCA	3 cut(s)	350, 500, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	281, 476, 485, 494, 905
HpyF3I	CTNAG	9 cut(s)	150, 339, 414, 471, 528, 567, 877, 909, 1002
HpySE526I	ACGT	4 cut(s)	216, 391, 421, 458
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	556, 682, 1060
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	5 cut(s)	79, 101, 424, 518, 823
LmnI	GCTCC	3 cut(s)	11, 819, 835
Lsp1109I	GCAGC	5 cut(s)	274, 397, 466, 484, 512
LweI	GCATC	3 cut(s)	484, 733, 979
MaeI	CTAG	3 cut(s)	60, 441, 483
MaeII	ACGT	4 cut(s)	216, 391, 421, 458
MaeIII	GTNAC	3 cut(s)	55, 316, 994
MalI	GATC	5 cut(s)	81, 103, 426, 520, 825
MboI	GATC	5 cut(s)	79, 101, 424, 518, 823
MflI	RGATCY	2 cut(s)	79, 518
MluCI	AATT	6 cut(s)	91, 130, 535, 562, 790, 1047
MlyI	GAGTC	3 cut(s)	256, 994, 1077
MmeI	TCCRAC	1 cut(s)	797
MnlI	CCTC	8 cut(s)	36, 354, 371, 466, 676, 886, 989, 1058
MroXI	GAANNNNTTC	2 cut(s)	134, 245
MspA1I	CMGCKG	2 cut(s)	287, 470
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	782
MvaI	CCWGG	1 cut(s)	782
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	5 cut(s)	281, 476, 485, 494, 905
NdeII	GATC	5 cut(s)	79, 101, 424, 518, 823
NlaIII	CATG	3 cut(s)	556, 682, 1060
NmeAIII	GCCGAG	1 cut(s)	66
NspV	TTCGAA	2 cut(s)	128, 156
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	2 cut(s)	134, 245
PfeI	GAWTC	5 cut(s)	121, 185, 367, 444, 510
PkrI	GCNGC	6 cut(s)	286, 289, 412, 481, 499, 502
PleI	GAGTC	3 cut(s)	256, 994, 1076
PpsI	GAGTC	3 cut(s)	256, 994, 1076
Ppu21I	YACGTR	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	780
PspGI	CCWGG	1 cut(s)	780
PspPI	GGNCC	1 cut(s)	1027
PstI	CTGCAG	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	79, 518
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SatI	GCNGC	6 cut(s)	285, 288, 411, 480, 498, 501
Sau3AI	GATC	5 cut(s)	79, 101, 424, 518, 823
Sau96I	GGNCC	1 cut(s)	1027
SchI	GAGTC	3 cut(s)	256, 994, 1077
ScrFI	CCNGG	1 cut(s)	782
SfaNI	GCATC	3 cut(s)	484, 733, 979
SfcI	CTRYAG	1 cut(s)	498
SfuI	TTCGAA	2 cut(s)	128, 156
SinI	GGWCC	1 cut(s)	1027
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
Sse9I	AATT	6 cut(s)	91, 130, 535, 562, 790, 1047
SsiI	CCGC	7 cut(s)	38, 273, 282, 285, 290, 505, 857
SspMI	CTAG	3 cut(s)	60, 441, 483
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	3 cut(s)	169, 395, 428
TaiI	ACGT	4 cut(s)	219, 394, 424, 461
TasI	AATT	6 cut(s)	91, 130, 535, 562, 790, 1047
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	5 cut(s)	121, 185, 367, 444, 510
TscAI	CASTG	3 cut(s)	609, 958, 975
TseI	GCWGC	5 cut(s)	287, 410, 479, 497, 500
TspDTI	ATGAA	5 cut(s)	19, 569, 667, 1040, 1059
TspGWI	ACGGA	2 cut(s)	503, 727
TspRI	CASTG	3 cut(s)	609, 958, 975
VpaK11BI	GGWCC	1 cut(s)	1027
XapI	RAATTY	4 cut(s)	91, 130, 535, 1047
XmnI	GAANNNNTTC	2 cut(s)	134, 245
XspI	CTAG	3 cut(s)	60, 441, 483
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.