MD17G1152400.v1.1

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
14092036 .. 14095154
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1152400.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGTGTGGAGGTGCTATTATTTCCGATTTCATAGCGCCGGCGGCACGGTCCCGGCGGCTGACCGCCGACTACCTCTGGCCCGATCTCAAAAAACCCAGTTCGGGAAAGCGGTTCTCGAAGCCTCTGAGGTCCGAAATCGTTGACTTGGACGACGACTTCGAGGCTGATTTCCAGGAATTCAAGGACGAGTCCGATGTGGACGAGGACGATGAAATGGTTGATTTCAAGCCCTCTGCCTTCTCTGCCGGAAAGCCCTCTTCTGCCCGTGGTTCTACTGCTGTGAAATCTGTGGAGTTCAATGGGCAAGCTGAGAAATCTGCAAAGAGAAAAAGGAAGAACCAGTACAGGGGAATTCGCCAGCGCCCATGGGGAAAGTGGGCTGCAGAGATCCGCGACCCAAGGAAAGGGGTTCGGGTTTGGCTTGGAACTTTCAACACTGCAGAAGAAGCTGCAAGGGCATATGATGCCGAGGCACGCAGAATTCGTGGTAAGAAAGCCAAGGTTAACTTCCCTGAAGAAACCCCTCGTGCTTCTGCAAAGCGTTCTGTGAAGGCAAATTCTCAGAAACTGATACCCAAGACAAACGTGAATGGCACTGAGTCTAATCTGAACCAGAATTTCAATTTTGTGAACGACTCAAGTCAGGACTATTACAGTGCTCTGGGTTTTCTGGATGAAAAGCCAACATTGAATAACTTTGGGTATATGTCTACCTTCCTTGCCAATGGAGATGTTGCACTGAAATCCTCTACTCCATCCGATCCTGCCCCCTTTTATTTGAGTTCCGATCAGGGAAGCAACTCATTTGATTGTTCTGACTTCGGCTGGGGAGAACAAGGCTCAAAGACTCCAGAAATCTCATCAGTTCTTTCTTCTGTGATGGAAGAAACTGATGACTCACTGTTTCTCGAGGATGCTAACCCAACGAAGAAGCTGAAGCCCAACTCACAGGATCTGGTGCTTCCTCAGGATAATGCAGGAAAGACACTGTCTGATGAGCTCTCAGCTTTTGAGATGAAGTACTTTCAGACCCCATATCTTGATGGGAGCTGGGATGCTTCAGTGGACGCCTTCCTTAACGGAGACGCAACTCAGGATGGTGGTAATCCGGGGGACCTATGGACCTTTGACGATCTGCCCGCAATTGTTGGAGGAACTTTCTGA

Protein Analysis

388

Amino Acids

42.74

Weight (kDa)

4.84

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 114 - 163 3.7e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 710
AccII CGCG 1 cut(s) 393
AciI CCGC 6 cut(s) 41, 55, 63, 109, 391, 1140
AclWI GGATC 3 cut(s) 382, 755, 960
AcsI RAATTY 5 cut(s) 176, 351, 480, 556, 616
AcuI CTGAAG 3 cut(s) 534, 956, 1044
AcyI GRCGYC 1 cut(s) 1068
AfaI GTAC 2 cut(s) 344, 1022
AfiI CCNNNNNNNGG 3 cut(s) 101, 346, 404
AgsI TTSAA 6 cut(s) 181, 226, 298, 433, 622, 691
AjnI CCWGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 6 cut(s) 308, 449, 934, 1000, 1007, 1050
AluI AGCT 6 cut(s) 308, 449, 934, 1000, 1007, 1050
Alw21I GWGCWC 2 cut(s) 661, 1002
Alw26I GTCTC 1 cut(s) 1077
AlwI GGATC 3 cut(s) 382, 755, 960
AlwNI CAGNNNCTG 2 cut(s) 568, 955
Ama87I CYCGRG 1 cut(s) 908
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 380, 449
ApoI RAATTY 5 cut(s) 176, 351, 480, 556, 616
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AspLEI GCGC 2 cut(s) 37, 363
AspS9I GGNCC 5 cut(s) 48, 78, 129, 1114, 1122
AsuC2I CCSGG 2 cut(s) 52, 1110
AvaI CYCGRG 1 cut(s) 908
AvaII GGWCC 4 cut(s) 48, 129, 1114, 1122
AxyI CCTNAGG 1 cut(s) 966
BanII GRGCYC 1 cut(s) 1002
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BauI CACGAG 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 661, 1002
BbvI GCAGC 2 cut(s) 367, 436
BccI CCATC 4 cut(s) 763, 874, 1037, 1091
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 2 cut(s) 52, 1110
BcoDI GTCTC 1 cut(s) 1077
BfmI CTRYAG 2 cut(s) 381, 438
BfoI RGCGCY 2 cut(s) 38, 364
BisI GCNGC 4 cut(s) 42, 56, 381, 450
BlsI GCNGC 4 cut(s) 43, 57, 382, 451
BmcAI AGTACT 1 cut(s) 1022
Bme1390I CCNGG 3 cut(s) 52, 173, 1110
Bme18I GGWCC 4 cut(s) 48, 129, 1114, 1122
BmeT110I CYCGRG 1 cut(s) 908
BmgT120I GGNCC 5 cut(s) 48, 78, 129, 1114, 1122
BmiI GGNNCC 2 cut(s) 50, 1115
BmrFI CCNGG 3 cut(s) 52, 173, 1110
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 3 cut(s) 454, 904, 1045
BmuI ACTGGG 1 cut(s) 90
BoxI GACNNNNGTC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 622
BpuMI CCSGG 2 cut(s) 52, 1110
BsaHI GRCGYC 1 cut(s) 1068
BsaJI CCNNGG 6 cut(s) 265, 365, 398, 468, 498, 1109
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 346, 404
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 96, 340
Bse21I CCTNAGG 1 cut(s) 966
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 6 cut(s) 265, 365, 398, 468, 498, 1109
BseGI GGATG 5 cut(s) 679, 755, 919, 1060, 1102
BseLI CCNNNNNNNGG 3 cut(s) 101, 346, 404
BseMII CTCAG 7 cut(s) 116, 300, 575, 588, 980, 1017, 1106
BseNI ACTGG 2 cut(s) 96, 340
BseXI GCAGC 2 cut(s) 367, 436
BseYI CCCAGC 2 cut(s) 825, 1050
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 1 cut(s) 79
BsiHKAI GWGCWC 2 cut(s) 661, 1002
BsiHKCI CYCGRG 1 cut(s) 908
BsiSI CCGG 4 cut(s) 38, 52, 246, 1109
BslFI GGGAC 2 cut(s) 34, 1127
BslI CCNNNNNNNGG 3 cut(s) 101, 346, 404
BsmAI GTCTC 1 cut(s) 1077
BsmBI CGTCTC 1 cut(s) 1077
BsmFI GGGAC 2 cut(s) 34, 1127
BsnI GGCC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 908
Bsp1286I GDGCHC 2 cut(s) 661, 1002
Bsp143I GATC 6 cut(s) 82, 387, 760, 787, 952, 1132
Bsp19I CCATGG 1 cut(s) 365
BspACI CCGC 6 cut(s) 41, 55, 63, 109, 391, 1140
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 7 cut(s) 117, 301, 574, 589, 979, 1016, 1105
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 50, 1115
BspMAI CTGCAG 2 cut(s) 385, 442
BspPI GGATC 3 cut(s) 382, 755, 960
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 2 cut(s) 96, 340
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 6 cut(s) 265, 365, 398, 468, 498, 1109
BssMI GATC 6 cut(s) 82, 387, 760, 787, 952, 1132
BssNI GRCGYC 1 cut(s) 1068
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 3 cut(s) 365, 398, 498
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 4 cut(s) 48, 656, 903, 990
Bst6I CTCTTC 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 1068
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 5 cut(s) 39, 306, 359, 475, 1140
BstDEI CTNAG 7 cut(s) 125, 309, 561, 597, 966, 1003, 1092
BstDSI CCRYGG 2 cut(s) 265, 365
BstF5I GGATG 5 cut(s) 679, 755, 919, 1060, 1102
BstFNI CGCG 1 cut(s) 393
BstH2I RGCGCY 2 cut(s) 38, 364
BstHHI GCGC 2 cut(s) 37, 363
BstKTI GATC 6 cut(s) 85, 390, 763, 790, 955, 1135
BstMAI GTCTC 1 cut(s) 1077
BstMBI GATC 6 cut(s) 82, 387, 760, 787, 952, 1132
BstMWI GCNNNNNNNGC 5 cut(s) 41, 242, 446, 455, 464
BstNI CCWGG 1 cut(s) 173
BstPAI GACNNNNGTC 1 cut(s) 639
BstSCI CCNGG 3 cut(s) 50, 171, 1108
BstSFI CTRYAG 2 cut(s) 381, 438
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 367, 436
BstX2I RGATCY 2 cut(s) 387, 952
BstYI RGATCY 2 cut(s) 387, 952
Bsu36I CCTNAGG 1 cut(s) 966
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 2 cut(s) 265, 365
BtsCI GGATG 5 cut(s) 679, 755, 919, 1060, 1102
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 7 cut(s) 435, 594, 661, 737, 899, 986, 1068
Cac8I GCNNGC 5 cut(s) 39, 306, 359, 475, 1140
CaiI CAGNNNCTG 2 cut(s) 568, 955
CfoI GCGC 2 cut(s) 37, 363
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 5 cut(s) 48, 78, 129, 1114, 1122
CseI GACGC 2 cut(s) 1076, 1094
Csp6I GTAC 2 cut(s) 343, 1021
CviAII CATG 1 cut(s) 366
CviQI GTAC 2 cut(s) 343, 1021
DdeI CTNAG 7 cut(s) 125, 309, 561, 597, 966, 1003, 1092
DpnI GATC 6 cut(s) 84, 389, 762, 789, 954, 1134
DpnII GATC 6 cut(s) 82, 387, 760, 787, 952, 1132
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 1000
Eco130I CCWWGG 3 cut(s) 365, 398, 498
Eco24I GRGCYC 1 cut(s) 1002
Eco47I GGWCC 4 cut(s) 48, 129, 1114, 1122
Eco53kI GAGCTC 1 cut(s) 1000
Eco57I CTGAAG 3 cut(s) 534, 956, 1044
Eco81I CCTNAGG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 1000
EcoO109I RGGNCCY 1 cut(s) 1114
EcoRI GAATTC 3 cut(s) 176, 351, 480
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 3 cut(s) 365, 398, 498
EcoT38I GRGCYC 1 cut(s) 1002
ErhI CCWWGG 3 cut(s) 365, 398, 498
Esp3I CGTCTC 1 cut(s) 1077
FaeI CATG 1 cut(s) 369
FaiI YATR 8 cut(s) 32, 367, 460, 462, 705, 707, 1036, 1120
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FaqI GGGAC 2 cut(s) 34, 1127
FatI CATG 1 cut(s) 365
FauI CCCGC 1 cut(s) 1147
FauNDI CATATG 1 cut(s) 460
FblI GTMKAC 1 cut(s) 710
Fnu4HI GCNGC 4 cut(s) 42, 56, 381, 450
FokI GGATG 5 cut(s) 686, 742, 926, 1067, 1109
FriOI GRGCYC 1 cut(s) 1002
Fsp4HI GCNGC 4 cut(s) 42, 56, 381, 450
GlaI GCGC 2 cut(s) 36, 362
GluI GCNGC 4 cut(s) 42, 56, 381, 450
GsaI CCCAGC 2 cut(s) 829, 1054
GsuI CTGGAG 1 cut(s) 834
HaeII RGCGCY 2 cut(s) 38, 364
HaeIII GGCC 1 cut(s) 79
HapII CCGG 4 cut(s) 38, 52, 246, 1109
HgaI GACGC 2 cut(s) 1076, 1094
HhaI GCGC 2 cut(s) 37, 363
Hin1I GRCGYC 1 cut(s) 1068
Hin1II CATG 1 cut(s) 369
Hin6I GCGC 2 cut(s) 35, 361
HinP1I GCGC 2 cut(s) 35, 361
HincII GTYRAC 2 cut(s) 142, 505
HindII GTYRAC 2 cut(s) 142, 505
HinfI GANTC 5 cut(s) 188, 599, 635, 847, 896
HpaI GTTAAC 1 cut(s) 505
HpaII CCGG 4 cut(s) 38, 52, 246, 1109
Hpy166II GTNNAC 6 cut(s) 142, 199, 505, 631, 711, 1066
Hpy188III TCNNGA 9 cut(s) 102, 115, 644, 671, 851, 908, 968, 1040, 1094
Hpy8I GTNNAC 6 cut(s) 142, 199, 505, 631, 711, 1066
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 4 cut(s) 247, 544, 724, 1081
HpyCH4III ACNGT 4 cut(s) 48, 656, 903, 990
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 7 cut(s) 320, 383, 440, 452, 536, 737, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 242, 446, 455, 464
HpyF3I CTNAG 7 cut(s) 125, 309, 561, 597, 966, 1003, 1092
HpySE526I ACGT 1 cut(s) 585
Hsp92I GRCGYC 1 cut(s) 1068
Hsp92II CATG 1 cut(s) 369
HspAI GCGC 2 cut(s) 35, 361
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
KspAI GTTAAC 1 cut(s) 505
Kzo9I GATC 6 cut(s) 82, 387, 760, 787, 952, 1132
LmnI GCTCC 1 cut(s) 1047
Lsp1109I GCAGC 2 cut(s) 367, 436
LweI GCATC 3 cut(s) 454, 904, 1045
MaeII ACGT 1 cut(s) 585
MalI GATC 6 cut(s) 84, 389, 762, 789, 954, 1134
MboI GATC 6 cut(s) 82, 387, 760, 787, 952, 1132
MboII GAAGA 7 cut(s) 249, 346, 455, 527, 864, 896, 940
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 2 cut(s) 387, 952
MhlI GDGCHC 2 cut(s) 661, 1002
MluCI AATT 7 cut(s) 176, 351, 480, 556, 616, 622, 1143
MlyI GAGTC 5 cut(s) 197, 608, 629, 841, 890
MmeI TCCRAC 1 cut(s) 1129
MreI CGCCGGCG 1 cut(s) 37
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 2 cut(s) 504, 1077
MspI CCGG 4 cut(s) 38, 52, 246, 1109
MspR9I CCNGG 3 cut(s) 52, 173, 1110
MunI CAATTG 1 cut(s) 1143
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 5 cut(s) 41, 242, 446, 455, 464
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 2 cut(s) 52, 1110
NcoI CCATGG 1 cut(s) 365
NdeI CATATG 1 cut(s) 460
NdeII GATC 6 cut(s) 82, 387, 760, 787, 952, 1132
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 2 cut(s) 50, 1115
NmeAIII GCCGAG 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 908
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 481
PdiI GCCGGC 1 cut(s) 39
PflFI GACNNNGTC 1 cut(s) 988
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 4 cut(s) 43, 57, 382, 451
PleI GAGTC 5 cut(s) 196, 607, 629, 841, 890
PpsI GAGTC 5 cut(s) 196, 607, 629, 841, 890
PpuMI RGGWCCY 1 cut(s) 1114
PshAI GACNNNNGTC 1 cut(s) 639
Psp124BI GAGCTC 1 cut(s) 1002
Psp5II RGGWCCY 1 cut(s) 1114
Psp6I CCWGG 1 cut(s) 171
PspFI CCCAGC 2 cut(s) 825, 1050
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 50, 1115
PspPI GGNCC 5 cut(s) 48, 78, 129, 1114, 1122
PspPPI RGGWCCY 1 cut(s) 1114
PstI CTGCAG 2 cut(s) 385, 442
PstNI CAGNNNCTG 2 cut(s) 568, 955
PsuI RGATCY 2 cut(s) 387, 952
PsyI GACNNNGTC 1 cut(s) 988
RsaI GTAC 2 cut(s) 344, 1022
RsaNI GTAC 2 cut(s) 343, 1021
SacI GAGCTC 1 cut(s) 1002
SaqAI TTAA 2 cut(s) 504, 1077
SatI GCNGC 4 cut(s) 42, 56, 381, 450
Sau3AI GATC 6 cut(s) 82, 387, 760, 787, 952, 1132
Sau96I GGNCC 5 cut(s) 48, 78, 129, 1114, 1122
ScaI AGTACT 1 cut(s) 1022
SchI GAGTC 5 cut(s) 197, 608, 629, 841, 890
ScrFI CCNGG 3 cut(s) 52, 173, 1110
SduI GDGCHC 2 cut(s) 661, 1002
SfaNI GCATC 3 cut(s) 454, 904, 1045
SfcI CTRYAG 2 cut(s) 381, 438
Sfr274I CTCGAG 1 cut(s) 908
SgrAI CRCCGGYG 1 cut(s) 37
SinI GGWCC 4 cut(s) 48, 129, 1114, 1122
SlaI CTCGAG 1 cut(s) 908
SmlI CTYRAG 2 cut(s) 637, 908
SmoI CTYRAG 2 cut(s) 637, 908
Sse9I AATT 7 cut(s) 176, 351, 480, 556, 616, 622, 1143
SsiI CCGC 6 cut(s) 41, 55, 63, 109, 391, 1140
SstI GAGCTC 1 cut(s) 1002
StyD4I CCNGG 3 cut(s) 50, 171, 1108
StyI CCWWGG 3 cut(s) 365, 398, 498
TaaI ACNGT 4 cut(s) 48, 656, 903, 990
TaiI ACGT 1 cut(s) 588
TaqI TCGA 3 cut(s) 116, 159, 909
TasI AATT 7 cut(s) 176, 351, 480, 556, 616, 622, 1143
TatI WGTACW 2 cut(s) 342, 1020
TauI GCSGC 2 cut(s) 44, 58
Tru1I TTAA 2 cut(s) 504, 1077
Tru9I TTAA 2 cut(s) 504, 1077
TscAI CASTG 7 cut(s) 442, 601, 661, 744, 906, 993, 1068
TseI GCWGC 2 cut(s) 380, 449
TspDTI ATGAA 4 cut(s) 19, 225, 690, 1031
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 7 cut(s) 442, 601, 661, 744, 906, 993, 1068
Tth111I GACNNNGTC 1 cut(s) 988
VpaK11BI GGWCC 4 cut(s) 48, 129, 1114, 1122
XapI RAATTY 5 cut(s) 176, 351, 480, 556, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XhoI CTCGAG 1 cut(s) 908
XmiI GTMKAC 1 cut(s) 710
ZrmI AGTACT 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.