Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008519

Physical Location & Seq

Genomic Coordinates Reverse (-)

4737120 .. 4739298

Gene Structure 2179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCTCCGCGTCACTAACGAGTTTATCTGGCCGGATCTGAAAAACAAAGTGAAAGCTTCAAAGAAGAGATCGAATAAGCGATCCGATTTCTTCGATCTTGACGATGATTTCGAAGCTGATTTCCAAGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACGATGATGATGTCTTCGTCAATGTTAAGCCTTTCGTCTTCACCGCAACTACTAAGCCCGTAGCTTCCGCTTTCGTCTCCACTGGTATATATTTGGTAGGTTCAGCATATGCCAAGAAAACTGTAGAGTCCGCTGAGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGGATTAGGCAGCGTCCTTGGGGAAAATGGGCTGCGGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGGCTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGATGCTGCAGCACGCAGAATCCGTGGCACGAAAGCTAAGGTGAATTTTCCCGAGGAGAAGAACCCTAGCGTCGTATCCCAGAAACGTCCTAGTGCTAAGACTAATAATCTTCAGAAATCAGTGGCTAAACCAAACAAAAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTTTGACAACTCTTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGATGTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGCTGGAGGTAACAATGGATACCAGTATTTCAGTTCCGATCAGGGCAGTAACTCCTTCGACTGTTCTGAGTTCGGGTGGAGTGATCACGGCCCTAAAACACCCGAGATCTCTTCAATGCTTGTCAATAACAACGAAGCATCATTTGTTGAAGAAACCAATGCAGCCAAGAAGCTCAAACCAAACTCTGATGAGTCAGACGATCTGATGGCATACCTTGACAACGCCTTGTGGGACACCCCACTAGAAGTGGAAGCCATGCTTGGCGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAGTGGAGCTATGGAGCTTAGATGAGATCAATTTCATGCTGGAAGGAGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0008150 GO:0009593 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0036293 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0060255 GO:0065007 GO:0070482 GO:0070483 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

379

Amino Acids

42.53

Weight (kDa)

4.91

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	122 - 171	1.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53910 AT1G53910 AT1G53910 AT3G14230 AT3G14230 AT3G14230
fragaria_vesca	FvH4_6g35670
malus_domestica	MD09G1174400.v1.1 MD17G1152400.v1.1
prunus_persica	Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1
pyrus_communis	pycom09g09150 pycom17g14570
rosa_chinensis	RchiOBHm_Chr2g0147651
rosa_laevigata	RLG00000020267
rosa_roxburghii	Rroxscaffold_2G00099420
rosa_rugosa	Rorug02G0400600
rosa_samantha	Rh2AG458000 Rh2BG470600 Rh2CG445400 Rh2DG479800
rosa_wichuraiana	Rw2G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	6 cut(s)	38, 52, 249, 273, 336, 422
AclWI	GGATC	4 cut(s)	87, 120, 421, 428
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	2 cut(s)	683, 749
AfiI	CCNNNNNNNGG	2 cut(s)	443, 456
AgsI	TTSAA	3 cut(s)	105, 897, 932
AjuI	GAANNNNNNNTTGG	2 cut(s)	1026, 1058
Alw26I	GTCTC	2 cut(s)	286, 1125
AlwI	GGATC	4 cut(s)	87, 120, 421, 428
AlwNI	CAGNNNCTG	1 cut(s)	1055
Ama87I	CYCGRG	3 cut(s)	450, 551, 884
AoxI	GGCC	2 cut(s)	74, 871
ApeKI	GCWGC	7 cut(s)	397, 419, 488, 506, 509, 658, 944
ApoI	RAATTY	1 cut(s)	544
ArsI	GACNNNNNNTTYG	6 cut(s)	137, 169, 176, 208, 692, 724
AspLEI	GCGC	1 cut(s)	1049
AspS9I	GGNCC	2 cut(s)	45, 872
AsuHPI	GGTGA	3 cut(s)	238, 553, 725
AsuII	TTCGAA	1 cut(s)	156
AvaI	CYCGRG	3 cut(s)	450, 551, 884
AvaII	GGWCC	1 cut(s)	45
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BbsI	GAAGAC	3 cut(s)	210, 211, 235
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	7 cut(s)	406, 409, 493, 500, 521, 670, 956
BccI	CCATC	1 cut(s)	982
BceAI	ACGGC	1 cut(s)	886
BciVI	GTATCC	2 cut(s)	586, 794
BclI	TGATCA	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	286, 1125
BfaI	CTAG	3 cut(s)	567, 591, 1025
BfmI	CTRYAG	2 cut(s)	327, 507
BfuI	GTATCC	2 cut(s)	586, 794
BglII	AGATCT	1 cut(s)	888
BisI	GCNGC	7 cut(s)	398, 420, 489, 507, 510, 659, 945
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	7 cut(s)	399, 421, 490, 508, 511, 660, 946
BmcAI	AGTACT	1 cut(s)	683
Bme18I	GGWCC	1 cut(s)	45
BmeT110I	CYCGRG	3 cut(s)	450, 551, 884
BmgT120I	GGNCC	2 cut(s)	45, 872
BmiI	GGNNCC	2 cut(s)	47, 448
BmrI	ACTGGG	1 cut(s)	1079
BmsI	GCATC	4 cut(s)	493, 772, 929, 1042
BmuI	ACTGGG	1 cut(s)	1079
BpiI	GAAGAC	3 cut(s)	210, 211, 235
BpmI	CTGGAG	1 cut(s)	807
Bpu10I	CCTNAGC	2 cut(s)	480, 537
Bpu1102I	GCTNAGC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	156
BsaJI	CCNNGG	6 cut(s)	41, 169, 385, 404, 523, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 456
Bse1I	ACTGG	3 cut(s)	292, 805, 1085
BseDI	CCNNGG	6 cut(s)	41, 169, 385, 404, 523, 552
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	443, 456
BseMII	CTCAG	7 cut(s)	330, 339, 471, 662, 755, 840, 1082
BseNI	ACTGG	3 cut(s)	292, 805, 1085
BseRI	GAGGAG	2 cut(s)	24, 569
BseXI	GCAGC	7 cut(s)	406, 409, 493, 500, 521, 670, 956
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	76, 873
BsiHKCI	CYCGRG	3 cut(s)	450, 551, 884
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	31, 1028
BslI	CCNNNNNNNGG	2 cut(s)	443, 456
BsmAI	GTCTC	2 cut(s)	286, 1125
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	31, 1028
BsnI	GGCC	2 cut(s)	76, 873
BsoBI	CYCGRG	3 cut(s)	450, 551, 884
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	747
Bsp1720I	GCTNAGC	1 cut(s)	339
BspACI	CCGC	6 cut(s)	38, 52, 249, 273, 336, 422
BspANI	GGCC	2 cut(s)	76, 873
BspCNI	CTCAG	7 cut(s)	331, 340, 472, 663, 754, 841, 1081
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	47, 448
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	4 cut(s)	87, 120, 421, 428
BspT104I	TTCGAA	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	747
BsrI	ACTGG	3 cut(s)	292, 805, 1085
BssECI	CCNNGG	6 cut(s)	41, 169, 385, 404, 523, 552
BssT1I	CCWWGG	2 cut(s)	169, 404
Bst4CI	ACNGT	2 cut(s)	328, 845
Bst6I	CTCTTC	5 cut(s)	104, 362, 726, 898, 1068
BstAUI	TGTACA	1 cut(s)	747
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	345, 514
BstDSI	CCRYGG	1 cut(s)	523
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	1049
BstMAI	GTCTC	2 cut(s)	286, 1125
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 485, 494, 503
BstSFI	CTRYAG	2 cut(s)	327, 507
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	7 cut(s)	406, 409, 493, 500, 521, 670, 956
BstV2I	GAAGAC	3 cut(s)	210, 211, 235
BstX2I	RGATCY	3 cut(s)	79, 426, 888
BstYI	RGATCY	3 cut(s)	79, 426, 888
BsuI	GTATCC	2 cut(s)	586, 794
BsuRI	GGCC	2 cut(s)	76, 873
BtgI	CCRYGG	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	4 cut(s)	285, 474, 627, 1092
Cac8I	GCNNGC	2 cut(s)	345, 514
CaiI	CAGNNNCTG	1 cut(s)	1055
CfoI	GCGC	1 cut(s)	1049
Cfr13I	GGNCC	2 cut(s)	45, 872
CseI	GACGC	3 cut(s)	43, 389, 559
Csp6I	GTAC	2 cut(s)	682, 748
CviAII	CATG	3 cut(s)	727, 1039, 1120
CviQI	GTAC	2 cut(s)	682, 748
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	5 cut(s)	104, 362, 726, 898, 1068
EarI	CTCTTC	5 cut(s)	104, 362, 726, 898, 1068
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	169, 404
Eco47I	GGWCC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	3 cut(s)	450, 551, 884
EcoO109I	RGGNCCY	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	169, 404
ErhI	CCWWGG	2 cut(s)	169, 404
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	3 cut(s)	730, 1042, 1123
FalI	AAGNNNNNCTT	4 cut(s)	631, 663, 1026, 1058
FaqI	GGGAC	2 cut(s)	31, 1028
FatI	CATG	3 cut(s)	726, 1038, 1119
FauNDI	CATATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	7 cut(s)	398, 420, 489, 507, 510, 659, 945
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	7 cut(s)	398, 420, 489, 507, 510, 659, 945
FspBI	CTAG	3 cut(s)	567, 591, 1025
GlaI	GCGC	1 cut(s)	1048
GluI	GCNGC	7 cut(s)	398, 420, 489, 507, 510, 659, 945
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	76, 873
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	3 cut(s)	43, 389, 559
HhaI	GCGC	1 cut(s)	1049
Hin1II	CATG	3 cut(s)	730, 1042, 1123
Hin6I	GCGC	1 cut(s)	1047
HinP1I	GCGC	1 cut(s)	1047
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	7 cut(s)	185, 332, 376, 519, 673, 974, 1066
HpaI	GTTAAC	1 cut(s)	768
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	3 cut(s)	238, 553, 725
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188III	TCNNGA	4 cut(s)	143, 450, 551, 1070
Hpy8I	GTNNAC	1 cut(s)	768
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	2 cut(s)	847, 1121
HpyCH4III	ACNGT	2 cut(s)	328, 845
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	3 cut(s)	509, 687, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 485, 494, 503
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	3 cut(s)	730, 1042, 1123
HspAI	GCGC	1 cut(s)	1047
Ksp22I	TGATCA	1 cut(s)	865
KspAI	GTTAAC	1 cut(s)	768
LmnI	GCTCC	4 cut(s)	11, 452, 1090, 1098
Lsp1109I	GCAGC	7 cut(s)	406, 409, 493, 500, 521, 670, 956
LweI	GCATC	4 cut(s)	493, 772, 929, 1042
MaeI	CTAG	3 cut(s)	567, 591, 1025
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	5 cut(s)	55, 643, 791, 830, 1063
MflI	RGATCY	3 cut(s)	79, 426, 888
MluCI	AATT	2 cut(s)	544, 1114
MlyI	GAGTC	5 cut(s)	179, 341, 682, 983, 1060
MseI	TTAA	3 cut(s)	177, 231, 767
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	344, 485, 494, 503
NdeI	CATATG	1 cut(s)	313
NlaIII	CATG	3 cut(s)	730, 1042, 1123
NlaIV	GGNNCC	2 cut(s)	47, 448
NmeAIII	GCCGAG	2 cut(s)	66, 167
NmuCI	GTSAC	2 cut(s)	55, 1063
NspV	TTCGAA	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 153, 520
PfeI	GAWTC	2 cut(s)	376, 519
PkrI	GCNGC	7 cut(s)	399, 421, 490, 508, 511, 660, 946
PleI	GAGTC	5 cut(s)	179, 340, 681, 982, 1060
PpsI	GAGTC	5 cut(s)	179, 340, 681, 982, 1060
PpuMI	RGGWCCY	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	47, 448
PspPI	GGNCC	2 cut(s)	45, 872
PspPPI	RGGWCCY	1 cut(s)	45
PsrI	GAACNNNNNNTAC	2 cut(s)	636, 668
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	1055
PsuI	RGATCY	3 cut(s)	79, 426, 888
RsaI	GTAC	2 cut(s)	683, 749
RsaNI	GTAC	2 cut(s)	682, 748
SaqAI	TTAA	3 cut(s)	177, 231, 767
SatI	GCNGC	7 cut(s)	398, 420, 489, 507, 510, 659, 945
Sau96I	GGNCC	2 cut(s)	45, 872
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	5 cut(s)	179, 341, 682, 983, 1060
SfaNI	GCATC	4 cut(s)	493, 772, 929, 1042
SfcI	CTRYAG	2 cut(s)	327, 507
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	45
Sse9I	AATT	2 cut(s)	544, 1114
SsiI	CCGC	6 cut(s)	38, 52, 249, 273, 336, 422
SspMI	CTAG	3 cut(s)	567, 591, 1025
StyI	CCWWGG	2 cut(s)	169, 404
TaaI	ACNGT	2 cut(s)	328, 845
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	6 cut(s)	116, 138, 156, 471, 780, 840
TasI	AATT	2 cut(s)	544, 1114
TatI	WGTACW	2 cut(s)	681, 747
TfiI	GAWTC	2 cut(s)	376, 519
Tru1I	TTAA	3 cut(s)	177, 231, 767
Tru9I	TTAA	3 cut(s)	177, 231, 767
TscAI	CASTG	4 cut(s)	292, 481, 627, 1092
TseFI	GTSAC	2 cut(s)	55, 1063
TseI	GCWGC	7 cut(s)	397, 419, 488, 506, 509, 658, 944
Tsp45I	GTSAC	2 cut(s)	55, 1063
TspDTI	ATGAA	3 cut(s)	19, 715, 1108
TspGWI	ACGGA	2 cut(s)	419, 512
TspRI	CASTG	4 cut(s)	292, 481, 627, 1092
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1092
XspI	CTAG	3 cut(s)	567, 591, 1025
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.