Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008519

Physical Location & Seq

Genomic Coordinates Forward (+)

2404791 .. 2407714

Gene Structure 2924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G032300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTGTGGAGGTGCTATAATATCCGATTTCATAGCGCCGACTCGGTCCCGGCTCACCGCTGACTACCTCTGGCCCGATCTCAAAAAACCCAGTTCGGATAAGCGGTTCTCGAAGCCTCTCAGGCCCGAAATCATTGACTTAGACCACGACTTCGAGGCTGATTTCCAGGAATTCAAGGACGAGTCTGATGTGGACGAAGATGATGAAATGGTTGAGGCCAAGCCCTCTGCTTTCTCTGCTGGAAAGCCCTCTTCTGCTCGTGGCTCTACGACTGTGAAATTAGTGGAGTTCAATGGGCAGGCTGAGAAATCTGCAAAGAGAAAGAGGAAGAACCAGTACAGGGGAATTCGCCAGCGCCCATGGGGTAAGTGGGCTGCAGAGATCCGAGACCCAAGGAAAGGGGTCCGGGTTTGGCTTGGAACTTTCAACACTGCAGAAGAAGCTGCAAGGGCTTATGATTCCGAGGCACGTAGAATTCGTGGCAAGAAAGCCAAGGTTAATTTCCCTGATGAAACCCCACGATCTTCTGCAAAGCGTTCTGTCAAGGCAAATCCTCAGAAAATGCTACCCAAGACAAACACGAATGCCGTTCAGCCTAACCTGAACCAGAATATCAATTTTGTGAATGACCCAAATCAGGACTACTACAATGCTATGGGTTTTCTGGATGAAAAGCCAGCAACTAATAACTTTGGGTTTATGTCCACCTTCCCGGCCAATGAGGATGTTGCGCTGAAATCCTCTACCCCATCCGATGCTGTCCCGCTGTATTTCAGCTCTGATCAGGGAAGCAATTCTTTTGATTGTTCTGACTTTGGCTGGGGAGAACAAGGTTCAAAGACTCCAGAAATATCATCTGTTCTTTCATGTGTTATGGAAGAAAGTGATGACTCACTGTTTCTGGAGGATGCTAGCCCAACGAAGAAACTGAAGTCTAACCCAGAGGATCTGGTGCCTGTTCAGGATAATGCAGGAAAGACACTGACTGATGAGCTCTCAGCTTTTGAGATGAAGTACTTTCAGACGCCATATCTTGATGGGAGCTGGGATGCTTCAGTGGACGCCTTCCTCAGCACAGATGCAACTCAGGATGGTGGCAACTCAGTGGACTTTTGGAGCTTCGATGACCTGATTGGGGGAGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0008150 GO:0009593 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0036293 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0060255 GO:0065007 GO:0070482 GO:0070483 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

383

Amino Acids

42.5

Weight (kDa)

4.81

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53910 AT1G53910 AT1G53910 AT3G14230 AT3G14230 AT3G14230
fragaria_vesca	FvH4_6g35670
malus_domestica	MD09G1174400.v1.1 MD17G1152400.v1.1
prunus_persica	Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1
pyrus_communis	pycom09g09150 pycom17g14570
rosa_chinensis	RchiOBHm_Chr2g0147651
rosa_laevigata	RLG00000020267
rosa_roxburghii	Rroxscaffold_2G00099420
rosa_rugosa	Rorug02G0400600
rosa_samantha	Rh2AG458000 Rh2BG470600 Rh2CG445400 Rh2DG479800
rosa_wichuraiana	Rw2G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	952
AciI	CCGC	3 cut(s)	57, 103, 764
AclWI	GGATC	2 cut(s)	376, 954
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	3 cut(s)	170, 345, 474
AcuI	CTGAAG	2 cut(s)	950, 1038
AcyI	GRCGYC	2 cut(s)	1025, 1062
AfaI	GTAC	2 cut(s)	338, 1016
AfiI	CCNNNNNNNGG	4 cut(s)	340, 398, 637, 1135
AgsI	TTSAA	4 cut(s)	175, 292, 427, 837
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
AluBI	AGCT	6 cut(s)	443, 777, 994, 1001, 1044, 1119
AluI	AGCT	6 cut(s)	443, 777, 994, 1001, 1044, 1119
Alw21I	GWGCWC	1 cut(s)	996
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	2 cut(s)	376, 954
AoxI	GGCC	4 cut(s)	71, 122, 216, 714
ApeKI	GCWGC	2 cut(s)	374, 443
ApoI	RAATTY	3 cut(s)	170, 345, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	1 cut(s)	793
AspLEI	GCGC	3 cut(s)	37, 357, 733
AspS9I	GGNCC	4 cut(s)	45, 72, 123, 403
AsuC2I	CCSGG	3 cut(s)	49, 407, 713
AsuHPI	GGTGA	1 cut(s)	46
AsuNHI	GCTAGC	1 cut(s)	911
AvaII	GGWCC	2 cut(s)	45, 403
BanI	GGYRCC	1 cut(s)	952
BanII	GRGCYC	1 cut(s)	996
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BauI	CACGAG	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	996
BbvCI	CCTCAGC	1 cut(s)	1070
BbvI	GCAGC	2 cut(s)	361, 430
BccI	CCATC	3 cut(s)	757, 1031, 1085
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	3 cut(s)	49, 407, 713
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	912
BfmI	CTRYAG	2 cut(s)	375, 432
BfoI	RGCGCY	2 cut(s)	38, 358
BglI	GCCNNNNNGGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	375, 444
BlsI	GCNGC	2 cut(s)	376, 445
BmcAI	AGTACT	1 cut(s)	1016
Bme1390I	CCNGG	4 cut(s)	49, 167, 407, 713
Bme18I	GGWCC	2 cut(s)	45, 403
BmgT120I	GGNCC	4 cut(s)	45, 72, 123, 403
BmiI	GGNNCC	3 cut(s)	47, 404, 954
BmrFI	CCNGG	4 cut(s)	49, 167, 407, 713
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	4 cut(s)	745, 898, 1039, 1069
BmtI	GCTAGC	1 cut(s)	915
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	828, 923
Bpu10I	CCTNAGC	1 cut(s)	1070
BpuMI	CCSGG	3 cut(s)	49, 407, 713
BsaAI	YACGTR	1 cut(s)	470
BsaHI	GRCGYC	2 cut(s)	1025, 1062
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	359, 392, 462, 492
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 398, 637, 1135
Bse1I	ACTGG	2 cut(s)	90, 334
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	4 cut(s)	359, 392, 462, 492
BseGI	GGATG	6 cut(s)	673, 730, 749, 913, 1054, 1096
BseLI	CCNNNNNNNGG	4 cut(s)	340, 398, 637, 1135
BseMII	CTCAG	7 cut(s)	133, 294, 569, 1011, 1084, 1100, 1116
BseNI	ACTGG	2 cut(s)	90, 334
BseXI	GCAGC	2 cut(s)	361, 430
BseYI	CCCAGC	2 cut(s)	819, 1044
BshFI	GGCC	4 cut(s)	73, 124, 218, 716
BshNI	GGYRCC	1 cut(s)	952
BsiHKAI	GWGCWC	1 cut(s)	996
BsiSI	CCGG	3 cut(s)	49, 406, 713
BslFI	GGGAC	2 cut(s)	31, 746
BslI	CCNNNNNNNGG	4 cut(s)	340, 398, 637, 1135
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	2 cut(s)	31, 746
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	4 cut(s)	73, 124, 218, 716
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	996
Bsp143I	GATC	5 cut(s)	76, 381, 521, 781, 946
Bsp19I	CCATGG	1 cut(s)	359
BspACI	CCGC	3 cut(s)	57, 103, 764
BspANI	GGCC	4 cut(s)	73, 124, 218, 716
BspCNI	CTCAG	7 cut(s)	132, 295, 568, 1010, 1083, 1099, 1115
BspLI	GGNNCC	3 cut(s)	47, 404, 954
BspMAI	CTGCAG	2 cut(s)	379, 436
BspOI	GCTAGC	1 cut(s)	915
BspPI	GGATC	2 cut(s)	376, 954
BspT107I	GGYRCC	1 cut(s)	952
BspTNI	GGTCTC	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	90, 334
BssECI	CCNNGG	4 cut(s)	359, 392, 462, 492
BssMI	GATC	5 cut(s)	76, 381, 521, 781, 946
BssNI	GRCGYC	2 cut(s)	1025, 1062
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	3 cut(s)	359, 392, 492
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	274, 897
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	2 cut(s)	1025, 1062
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	4 cut(s)	300, 353, 678, 913
BstDEI	CTNAG	8 cut(s)	119, 139, 303, 555, 997, 1070, 1086, 1102
BstDSI	CCRYGG	1 cut(s)	359
BstF5I	GGATG	6 cut(s)	673, 730, 749, 913, 1054, 1096
BstH2I	RGCGCY	2 cut(s)	38, 358
BstHHI	GCGC	3 cut(s)	37, 357, 733
BstKTI	GATC	5 cut(s)	79, 384, 524, 784, 949
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	5 cut(s)	76, 381, 521, 781, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 236, 440, 449
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	4 cut(s)	47, 165, 405, 711
BstSFI	CTRYAG	2 cut(s)	375, 432
BstV1I	GCAGC	2 cut(s)	361, 430
BstX2I	RGATCY	2 cut(s)	381, 946
BstYI	RGATCY	2 cut(s)	381, 946
BsuRI	GGCC	4 cut(s)	73, 124, 218, 716
BtgI	CCRYGG	1 cut(s)	359
BtsCI	GGATG	6 cut(s)	673, 730, 749, 913, 1054, 1096
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	5 cut(s)	429, 893, 980, 1062, 1110
Cac8I	GCNNGC	4 cut(s)	300, 353, 678, 913
CfoI	GCGC	3 cut(s)	37, 357, 733
Cfr13I	GGNCC	4 cut(s)	45, 72, 123, 403
CseI	GACGC	2 cut(s)	1033, 1070
Csp6I	GTAC	2 cut(s)	337, 1015
CviAII	CATG	2 cut(s)	360, 867
CviQI	GTAC	2 cut(s)	337, 1015
DdeI	CTNAG	8 cut(s)	119, 139, 303, 555, 997, 1070, 1086, 1102
DpnI	GATC	5 cut(s)	78, 383, 523, 783, 948
DpnII	GATC	5 cut(s)	76, 381, 521, 781, 946
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	994
Eco130I	CCWWGG	3 cut(s)	359, 392, 492
Eco24I	GRGCYC	1 cut(s)	996
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	45, 403
Eco53kI	GAGCTC	1 cut(s)	994
Eco57I	CTGAAG	2 cut(s)	950, 1038
EcoICRI	GAGCTC	1 cut(s)	994
EcoRI	GAATTC	3 cut(s)	170, 345, 474
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	3 cut(s)	359, 392, 492
EcoT38I	GRGCYC	1 cut(s)	996
ErhI	CCWWGG	3 cut(s)	359, 392, 492
FaeI	CATG	2 cut(s)	363, 870
FaiI	YATR	9 cut(s)	17, 32, 361, 456, 656, 701, 868, 875, 1030
FalI	AAGNNNNNCTT	2 cut(s)	781, 813
FaqI	GGGAC	2 cut(s)	31, 746
FatI	CATG	2 cut(s)	359, 866
FauI	CCCGC	1 cut(s)	771
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	2 cut(s)	375, 444
FokI	GGATG	6 cut(s)	680, 736, 737, 920, 1061, 1103
FriOI	GRGCYC	1 cut(s)	996
Fsp4HI	GCNGC	2 cut(s)	375, 444
FspBI	CTAG	1 cut(s)	912
GlaI	GCGC	3 cut(s)	36, 356, 732
GluI	GCNGC	2 cut(s)	375, 444
GsaI	CCCAGC	2 cut(s)	823, 1048
GsuI	CTGGAG	2 cut(s)	828, 923
HaeII	RGCGCY	2 cut(s)	38, 358
HaeIII	GGCC	4 cut(s)	73, 124, 218, 716
HapII	CCGG	3 cut(s)	49, 406, 713
HgaI	GACGC	2 cut(s)	1033, 1070
HhaI	GCGC	3 cut(s)	37, 357, 733
Hin1I	GRCGYC	2 cut(s)	1025, 1062
Hin1II	CATG	2 cut(s)	363, 870
Hin6I	GCGC	3 cut(s)	35, 355, 731
HinP1I	GCGC	3 cut(s)	35, 355, 731
HinfI	GANTC	5 cut(s)	40, 182, 458, 841, 890
HpaII	CCGG	3 cut(s)	49, 406, 713
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	193, 705, 1060, 1108
Hpy188III	TCNNGA	8 cut(s)	109, 638, 665, 845, 902, 962, 1034, 1088
Hpy8I	GTNNAC	4 cut(s)	193, 705, 1060, 1108
HpyAV	CCTTC	2 cut(s)	718, 1075
HpyCH4III	ACNGT	2 cut(s)	274, 897
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	7 cut(s)	314, 377, 434, 446, 530, 971, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 236, 440, 449
HpyF3I	CTNAG	8 cut(s)	119, 139, 303, 555, 997, 1070, 1086, 1102
HpySE526I	ACGT	1 cut(s)	469
Hsp92I	GRCGYC	2 cut(s)	1025, 1062
Hsp92II	CATG	2 cut(s)	363, 870
HspAI	GCGC	3 cut(s)	35, 355, 731
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	5 cut(s)	76, 381, 521, 781, 946
LmnI	GCTCC	2 cut(s)	1041, 1116
Lsp1109I	GCAGC	2 cut(s)	361, 430
LweI	GCATC	4 cut(s)	745, 898, 1039, 1069
MaeI	CTAG	1 cut(s)	912
MaeII	ACGT	1 cut(s)	469
MalI	GATC	5 cut(s)	78, 383, 523, 783, 948
MboI	GATC	5 cut(s)	76, 381, 521, 781, 946
MboII	GAAGA	7 cut(s)	209, 243, 340, 449, 516, 890, 934
MflI	RGATCY	2 cut(s)	381, 946
MhlI	GDGCHC	1 cut(s)	996
MluCI	AATT	7 cut(s)	170, 278, 345, 474, 499, 616, 793
MlyI	GAGTC	4 cut(s)	34, 191, 835, 884
MroXI	GAANNNNTTC	1 cut(s)	793
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	2 cut(s)	59, 766
MspI	CCGG	3 cut(s)	49, 406, 713
MspR9I	CCNGG	4 cut(s)	49, 167, 407, 713
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	4 cut(s)	121, 236, 440, 449
NciI	CCSGG	3 cut(s)	49, 407, 713
NcoI	CCATGG	1 cut(s)	359
NdeII	GATC	5 cut(s)	76, 381, 521, 781, 946
NheI	GCTAGC	1 cut(s)	911
NlaIII	CATG	2 cut(s)	363, 870
NlaIV	GGNNCC	3 cut(s)	47, 404, 954
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PctI	GAATGC	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	793
PfeI	GAWTC	1 cut(s)	458
PflFI	GACNNNGTC	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	376, 445
PleI	GAGTC	4 cut(s)	34, 190, 835, 884
PpsI	GAGTC	4 cut(s)	34, 190, 835, 884
Ppu21I	YACGTR	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	996
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	2 cut(s)	819, 1044
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	47, 404, 954
PspPI	GGNCC	4 cut(s)	45, 72, 123, 403
PstI	CTGCAG	2 cut(s)	379, 436
PsuI	RGATCY	2 cut(s)	381, 946
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	2 cut(s)	338, 1016
RsaNI	GTAC	2 cut(s)	337, 1015
SacI	GAGCTC	1 cut(s)	996
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	375, 444
Sau3AI	GATC	5 cut(s)	76, 381, 521, 781, 946
Sau96I	GGNCC	4 cut(s)	45, 72, 123, 403
ScaI	AGTACT	1 cut(s)	1016
SchI	GAGTC	4 cut(s)	34, 191, 835, 884
ScrFI	CCNGG	4 cut(s)	49, 167, 407, 713
SduI	GDGCHC	1 cut(s)	996
SfaNI	GCATC	4 cut(s)	745, 898, 1039, 1069
SfcI	CTRYAG	2 cut(s)	375, 432
SinI	GGWCC	2 cut(s)	45, 403
Sse9I	AATT	7 cut(s)	170, 278, 345, 474, 499, 616, 793
SsiI	CCGC	3 cut(s)	57, 103, 764
SspMI	CTAG	1 cut(s)	912
SstI	GAGCTC	1 cut(s)	996
StyD4I	CCNGG	4 cut(s)	47, 165, 405, 711
StyI	CCWWGG	3 cut(s)	359, 392, 492
TaaI	ACNGT	2 cut(s)	274, 897
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	3 cut(s)	110, 153, 1122
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	170, 278, 345, 474, 499, 616, 793
TatI	WGTACW	2 cut(s)	336, 1014
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	5 cut(s)	436, 900, 987, 1062, 1110
TseI	GCWGC	2 cut(s)	374, 443
TspDTI	ATGAA	6 cut(s)	19, 219, 525, 684, 855, 1025
TspRI	CASTG	5 cut(s)	436, 900, 987, 1062, 1110
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	45, 403
XapI	RAATTY	3 cut(s)	170, 345, 474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	793
XspI	CTAG	1 cut(s)	912
ZrmI	AGTACT	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.