Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008519

Physical Location & Seq

Genomic Coordinates Reverse (-)

28143662 .. 28147619

Gene Structure 3958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTGTGGAGGTGCTATCATTTCCGGTTTCATTCCTCCGACGCGGTCCCGGCGAGTCACTGCCGACTTCCTCTGGCCCGATCTCAAGAAATCCAGCTCCGGGAAGAGATTCTCCTCCGGCGGCCGGCCTCTGAGGTCCGAAATCTTCGGATTGGACGACGATTTCGAGGCTGATTTCCAGGAATTCAAGGACGATTCTGATGTGGACGACGATGAGGATATGCTCGATTCCAAGCCCTTTGCTTTCTCCGCCGGAAAGCCCTCTCCTGCTGCTCGCGGACCAAAGACAGTGAAATCTGTGGAGTGCAATAGTCAAGCTGAGAAATCTGCAAAAAGGAAGAGGAAGAACCAGTACAGGGGAATTCGTCAGCGCCCATGGGGCAAGTGGGCTGCCGAGATCCGAGACCCAAGGAAAGGAGTCCGTGTGTGGCTCGGAACTTTCAACACTGCTGAAGAGGCTGCAAGGGCCTACGATGCTGAGGCACGTAGAATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAAGAAGCCCCTCGTGCTTCTACAAAGCGTGCTGTCAAGGCGAATCCTCAGAAAGTGCTACCCAAGACAAACTTGGACAATATGCAGTCTAATCTGAACCAGAACGTCAATTTTGTGAATGGCTCGGATCAAGAATACTACAATTCTATGAGTTTCCTGGAGGAGAAACCCCAAACTAACAACTTTGGTTACATGGACTCTGTCCTTACCAATGGTGACTTTGGGATGAAATCGTCCACTGTAGCTGACCCTGCTGCTCTGTATTTCAGTTCTGATCAGGGAAGCAATTCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAAGGCTCAAGGACTCCTGAAATCTCATCTGTTCTTTCTTCTGTTCTGGAAGAAAGTGAGAACTCATTGTTTCTGGAGGATGCTAACCCAACCAAGAAACTGAAGGCTAACCCTGAGGGTCTTGTGCCTGCTGAGAATAATGTTGCCCCAAAGACACTCTCTGAGGAGCTGTCAGCTTTTGAGATGAAGTATTGTCAGACACCATATCTTGAGGGGAGCTGGGATACTTCCATTGATACCTTTCTCAATGGTGATATGACCCAGGATGGTTGTAACCCAGTGGATCTTTGGAGCTTTGATGACCTTCCTTCAATGGCTGGGGGAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0008150 GO:0009593 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0036293 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0060255 GO:0065007 GO:0070482 GO:0070483 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

392

Amino Acids

43.34

Weight (kDa)

5.01

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	117 - 166	3.7e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53910 AT1G53910 AT1G53910 AT3G14230 AT3G14230 AT3G14230
fragaria_vesca	FvH4_6g35670
malus_domestica	MD09G1174400.v1.1 MD17G1152400.v1.1
prunus_persica	Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1
pyrus_communis	pycom09g09150 pycom17g14570
rosa_chinensis	RchiOBHm_Chr2g0147651
rosa_laevigata	RLG00000020267
rosa_roxburghii	Rroxscaffold_2G00099420
rosa_rugosa	Rorug02G0400600
rosa_samantha	Rh2AG458000 Rh2BG470600 Rh2CG445400 Rh2DG479800
rosa_wichuraiana	Rw2G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	43, 276
AciI	CCGC	4 cut(s)	43, 120, 249, 276
AclWI	GGATC	3 cut(s)	391, 657, 1134
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	4 cut(s)	182, 360, 489, 514
AcuI	CTGAAG	3 cut(s)	471, 543, 965
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	4 cut(s)	99, 123, 355, 413
AgsI	TTSAA	3 cut(s)	187, 442, 1155
AjnI	CCWGG	3 cut(s)	177, 678, 1104
AluBI	AGCT	7 cut(s)	96, 317, 767, 1012, 1019, 1062, 1137
AluI	AGCT	7 cut(s)	96, 317, 767, 1012, 1019, 1062, 1137
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	3 cut(s)	391, 657, 1134
AoxI	GGCC	4 cut(s)	74, 121, 125, 465
ApeKI	GCWGC	4 cut(s)	269, 389, 458, 776
ApoI	RAATTY	4 cut(s)	182, 360, 489, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp700I	GAANNNNTTC	2 cut(s)	107, 808
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	5 cut(s)	45, 75, 135, 278, 465
AsuC2I	CCSGG	2 cut(s)	49, 100
AsuHPI	GGTGA	3 cut(s)	523, 749, 1106
AvaII	GGWCC	3 cut(s)	45, 135, 278
AxyI	CCTNAGG	1 cut(s)	957
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BauI	CACGAG	1 cut(s)	534
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	4 cut(s)	256, 376, 445, 763
BccI	CCATC	1 cut(s)	1103
BciT130I	CCWGG	3 cut(s)	179, 680, 1106
BciVI	GTATCC	1 cut(s)	1060
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	2 cut(s)	49, 100
BcoDI	GTCTC	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	762
BfoI	RGCGCY	1 cut(s)	373
BfuI	GTATCC	1 cut(s)	1060
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	121, 270, 390, 459, 777
BlsI	GCNGC	5 cut(s)	122, 271, 391, 460, 778
Bme1390I	CCNGG	5 cut(s)	49, 100, 179, 680, 1106
Bme18I	GGWCC	3 cut(s)	45, 135, 278
BmgT120I	GGNCC	5 cut(s)	45, 75, 135, 278, 465
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	5 cut(s)	49, 100, 179, 680, 1106
BmrI	ACTGGG	1 cut(s)	1115
BmsI	GCATC	2 cut(s)	463, 913
BmuI	ACTGGG	1 cut(s)	1115
BpmI	CTGGAG	2 cut(s)	701, 938
Bpu10I	CCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	3 cut(s)	68, 835, 1073
BpuMI	CCSGG	2 cut(s)	49, 100
BsaAI	YACGTR	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	374, 407, 507, 1104
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 123, 355, 413
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	349, 1121
Bse21I	CCTNAGG	1 cut(s)	957
BseBI	CCWGG	3 cut(s)	179, 680, 1106
BseDI	CCNNGG	4 cut(s)	374, 407, 507, 1104
BseGI	GGATG	3 cut(s)	753, 928, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	99, 123, 355, 413
BseMII	CTCAG	7 cut(s)	122, 309, 468, 584, 948, 966, 996
BseNI	ACTGG	2 cut(s)	349, 1121
BseRI	GAGGAG	3 cut(s)	103, 698, 1022
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	4 cut(s)	256, 376, 445, 763
BseYI	CCCAGC	3 cut(s)	834, 1062, 1160
Bsh1236I	CGCG	2 cut(s)	43, 276
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	4 cut(s)	76, 123, 127, 467
BsiEI	CGRYCG	1 cut(s)	124
BsiSI	CCGG	6 cut(s)	24, 49, 99, 117, 124, 252
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	4 cut(s)	99, 123, 355, 413
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	4 cut(s)	76, 123, 127, 467
Bso31I	GGTCTC	1 cut(s)	396
Bsp143I	GATC	5 cut(s)	79, 396, 649, 796, 1126
Bsp19I	CCATGG	1 cut(s)	374
BspACI	CCGC	4 cut(s)	43, 120, 249, 276
BspANI	GGCC	4 cut(s)	76, 123, 127, 467
BspCNI	CTCAG	7 cut(s)	123, 310, 469, 583, 949, 967, 997
BspFNI	CGCG	2 cut(s)	43, 276
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	3 cut(s)	391, 657, 1134
BspTNI	GGTCTC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	349, 1121
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	374, 407, 507, 1104
BssMI	GATC	5 cut(s)	79, 396, 649, 796, 1126
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	3 cut(s)	374, 407, 507
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	3 cut(s)	179, 680, 1106
Bst4CI	ACNGT	2 cut(s)	289, 763
Bst6I	CTCTTC	3 cut(s)	98, 332, 447
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	4 cut(s)	125, 274, 552, 972
BstDEI	CTNAG	7 cut(s)	131, 318, 477, 570, 957, 975, 1005
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	3 cut(s)	753, 928, 1114
BstFNI	CGCG	2 cut(s)	43, 276
BstH2I	RGCGCY	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	5 cut(s)	82, 399, 652, 799, 1129
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	5 cut(s)	79, 396, 649, 796, 1126
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	9 cut(s)	49, 248, 378, 455, 464, 473, 536, 560, 773
BstNI	CCWGG	3 cut(s)	179, 680, 1106
BstSCI	CCNGG	5 cut(s)	47, 98, 177, 678, 1104
BstSFI	CTRYAG	1 cut(s)	762
BstUI	CGCG	2 cut(s)	43, 276
BstV1I	GCAGC	4 cut(s)	256, 376, 445, 763
BstX2I	RGATCY	2 cut(s)	396, 1126
BstYI	RGATCY	2 cut(s)	396, 1126
BstZI	CGGCCG	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	957
BsuI	GTATCC	1 cut(s)	1060
BsuRI	GGCC	4 cut(s)	76, 123, 127, 467
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	3 cut(s)	753, 928, 1114
BtsI	GCAGTG	2 cut(s)	57, 444
BtsIMutI	CAGTG	5 cut(s)	57, 294, 444, 759, 1128
Cac8I	GCNNGC	4 cut(s)	125, 274, 552, 972
CfoI	GCGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	5 cut(s)	45, 75, 135, 278, 465
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	375, 715
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	7 cut(s)	131, 318, 477, 570, 957, 975, 1005
DpnI	GATC	5 cut(s)	81, 398, 651, 798, 1128
DpnII	GATC	5 cut(s)	79, 396, 649, 796, 1126
EaeI	YGGCCR	1 cut(s)	121
EagI	CGGCCG	1 cut(s)	121
Eam1104I	CTCTTC	3 cut(s)	98, 332, 447
EarI	CTCTTC	3 cut(s)	98, 332, 447
EciI	GGCGGA	1 cut(s)	238
EclXI	CGGCCG	1 cut(s)	121
Eco130I	CCWWGG	3 cut(s)	374, 407, 507
Eco31I	GGTCTC	1 cut(s)	396
Eco47I	GGWCC	3 cut(s)	45, 135, 278
Eco52I	CGGCCG	1 cut(s)	121
Eco57I	CTGAAG	3 cut(s)	471, 543, 965
Eco81I	CCTNAGG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	465
EcoRI	GAATTC	3 cut(s)	182, 360, 489
EcoRII	CCWGG	3 cut(s)	177, 678, 1104
EcoT14I	CCWWGG	3 cut(s)	374, 407, 507
ErhI	CCWWGG	3 cut(s)	374, 407, 507
FaeI	CATG	2 cut(s)	378, 718
FaiI	YATR	7 cut(s)	221, 376, 605, 671, 716, 1048, 1100
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	374, 714
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	5 cut(s)	121, 270, 390, 459, 777
FokI	GGATG	3 cut(s)	760, 935, 1121
FseI	GGCCGGCC	1 cut(s)	127
Fsp4HI	GCNGC	5 cut(s)	121, 270, 390, 459, 777
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	5 cut(s)	121, 270, 390, 459, 777
GsaI	CCCAGC	3 cut(s)	838, 1066, 1164
GsuI	CTGGAG	2 cut(s)	701, 938
HaeII	RGCGCY	1 cut(s)	373
HaeIII	GGCC	4 cut(s)	76, 123, 127, 467
HapII	CCGG	6 cut(s)	24, 49, 99, 117, 124, 252
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	378, 718
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	8 cut(s)	54, 108, 194, 227, 417, 565, 719, 856
HpaII	CCGG	6 cut(s)	24, 49, 99, 117, 124, 252
HphI	GGTGA	3 cut(s)	523, 749, 1106
Hpy166II	GTNNAC	2 cut(s)	205, 759
Hpy188III	TCNNGA	7 cut(s)	85, 521, 653, 860, 890, 917, 1052
Hpy8I	GTNNAC	2 cut(s)	205, 759
Hpy99I	CGWCG	3 cut(s)	43, 161, 212
HpyAV	CCTTC	3 cut(s)	940, 1157, 1161
HpyCH4III	ACNGT	2 cut(s)	289, 763
HpyCH4IV	ACGT	2 cut(s)	484, 627
HpyCH4V	TGCA	4 cut(s)	306, 329, 461, 607
HpyF10VI	GCNNNNNNNGC	9 cut(s)	49, 248, 378, 455, 464, 473, 536, 560, 773
HpyF3I	CTNAG	7 cut(s)	131, 318, 477, 570, 957, 975, 1005
HpySE526I	ACGT	2 cut(s)	484, 627
Hsp92II	CATG	2 cut(s)	378, 718
HspAI	GCGC	1 cut(s)	370
KroI	GCCGGC	1 cut(s)	123
KroNI	GCCGGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	5 cut(s)	79, 396, 649, 796, 1126
LmnI	GCTCC	4 cut(s)	101, 1009, 1059, 1134
Lsp1109I	GCAGC	4 cut(s)	256, 376, 445, 763
LweI	GCATC	2 cut(s)	463, 913
MaeII	ACGT	2 cut(s)	484, 627
MaeIII	GTNAC	4 cut(s)	55, 710, 737, 1115
MalI	GATC	5 cut(s)	81, 398, 651, 798, 1128
MboI	GATC	5 cut(s)	79, 396, 649, 796, 1126
MboII	GAAGA	8 cut(s)	115, 136, 349, 355, 464, 536, 873, 905
MflI	RGATCY	2 cut(s)	396, 1126
MluCI	AATT	7 cut(s)	182, 360, 489, 514, 631, 664, 808
MlyI	GAGTC	4 cut(s)	63, 426, 713, 850
MmeI	TCCRAC	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	123
MroXI	GAANNNNTTC	2 cut(s)	107, 808
MspI	CCGG	6 cut(s)	24, 49, 99, 117, 124, 252
MspR9I	CCNGG	5 cut(s)	49, 100, 179, 680, 1106
MvaI	CCWGG	3 cut(s)	179, 680, 1106
MvnI	CGCG	2 cut(s)	43, 276
MwoI	GCNNNNNNNGC	9 cut(s)	49, 248, 378, 455, 464, 473, 536, 560, 773
NaeI	GCCGGC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	49, 100
NcoI	CCATGG	1 cut(s)	374
NdeII	GATC	5 cut(s)	79, 396, 649, 796, 1126
NgoMIV	GCCGGC	1 cut(s)	123
NlaIII	CATG	2 cut(s)	378, 718
NlaIV	GGNNCC	1 cut(s)	47
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	55, 737
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 162, 490
PdiI	GCCGGC	1 cut(s)	125
PdmI	GAANNNNTTC	2 cut(s)	107, 808
PfeI	GAWTC	4 cut(s)	108, 194, 227, 565
PflFI	GACNNNGTC	2 cut(s)	43, 722
PfoI	TCCNGGA	3 cut(s)	98, 177, 678
PkrI	GCNGC	5 cut(s)	122, 271, 391, 460, 778
PleI	GAGTC	4 cut(s)	62, 425, 713, 850
PpsI	GAGTC	4 cut(s)	62, 425, 713, 850
Ppu21I	YACGTR	1 cut(s)	485
Psp6I	CCWGG	3 cut(s)	177, 678, 1104
PspFI	CCCAGC	3 cut(s)	834, 1062, 1160
PspGI	CCWGG	3 cut(s)	177, 678, 1104
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	5 cut(s)	45, 75, 135, 278, 465
PsuI	RGATCY	2 cut(s)	396, 1126
PsyI	GACNNNGTC	2 cut(s)	43, 722
RigI	GGCCGGCC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SatI	GCNGC	5 cut(s)	121, 270, 390, 459, 777
Sau3AI	GATC	5 cut(s)	79, 396, 649, 796, 1126
Sau96I	GGNCC	5 cut(s)	45, 75, 135, 278, 465
SchI	GAGTC	4 cut(s)	63, 426, 713, 850
ScrFI	CCNGG	5 cut(s)	49, 100, 179, 680, 1106
SfaNI	GCATC	2 cut(s)	463, 913
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	3 cut(s)	45, 135, 278
SmlI	CTYRAG	3 cut(s)	83, 850, 1052
SmoI	CTYRAG	3 cut(s)	83, 850, 1052
Sse9I	AATT	7 cut(s)	182, 360, 489, 514, 631, 664, 808
SsiI	CCGC	4 cut(s)	43, 120, 249, 276
StyD4I	CCNGG	5 cut(s)	47, 98, 177, 678, 1104
StyI	CCWWGG	3 cut(s)	374, 407, 507
TaaI	ACNGT	2 cut(s)	289, 763
TaiI	ACGT	2 cut(s)	487, 630
TaqI	TCGA	2 cut(s)	165, 225
TasI	AATT	7 cut(s)	182, 360, 489, 514, 631, 664, 808
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	4 cut(s)	108, 194, 227, 565
TscAI	CASTG	5 cut(s)	64, 294, 451, 766, 1128
TseFI	GTSAC	2 cut(s)	55, 737
TseI	GCWGC	4 cut(s)	269, 389, 458, 776
Tsp45I	GTSAC	2 cut(s)	55, 737
TspDTI	ATGAA	3 cut(s)	19, 764, 1043
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	5 cut(s)	64, 294, 451, 766, 1128
Tth111I	GACNNNGTC	2 cut(s)	43, 722
VpaK11BI	GGWCC	3 cut(s)	45, 135, 278
XapI	RAATTY	4 cut(s)	182, 360, 489, 514
XcmI	CCANNNNNNNNNTGG	3 cut(s)	381, 592, 1128
XmnI	GAANNNNTTC	2 cut(s)	107, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.