Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008519

Physical Location & Seq

Genomic Coordinates Forward (+)

14794852 .. 14797631

Gene Structure 2780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1174400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTGTGGAGGTGCTATTATTTCCGATTTCATAGCGCCGGTACGGTCCCGCCGGCTCACCGCCGACTACCTCTGGCCCGATCTAAAAAAACCCAGTTCTGGGAAGCGGCTCTCGAAGCCTCTGAAGTCCGAAATCGTTGACTTGGACGACGACTTCGAGGCTGATTTCCAGGAGTTCAAGGACGAGTCCGATGTGGACGAGGACGATGAAATGGTTGATTTCAAGCCCTCTGCTTTCTCTGCCGGAAACCCCTCTTTTGCTCGTGGTTCTACCGCTGTGAAATCTGTGGAGTTTGATGGGCAAGCTGAGAAATCTGCAAAGAGAAAAAGGAAGAACCAGTACAGGGGAATTCGCCAGCGCCCATGGGGTAAGTGGGCTGCAGAGATCCGAGACCCAAGGAAAGGGGTTCGGGTTTGGCTTGGAACATTCAACACTGCAGAAGAAGCTGCAAGGGCGTATGATGCCGAGGCACGTAGAATTCGCGGCAAGAAAGCGAAGGTTAATTTCCCTGAAGAAACTCCTTGTGCTTCTGCAAAGCGTTCCATCAAGGAAAATCCTCAGAAATTGATAGCCAAGACAAACTTGAATGGCACTCAGTCTAATCTGAACCAGAATTTCAATTTTGTGAACGACTCAAGTGAGGACTACTACAGTGCTCTGGGTTTTCTGGATGAAAAGCCAACAATGAATAACTTTCGATACATGTCCACCTTCCCTGCCAATGAAGATGTTGCACTGAAATCCTCTGTTCCATCAGAAAATGCCCCTTTTTATTTCAGTTCCGATCAGGGAAGCAACTCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAAGGCTCGAAGACTCCAGAAATCTCATCCGTTATTTCATCTGTTATGGAGGAAAGTGATAACTCCCTGTTTCTGGAGGATTCTAACCCAACAAAGAAGATGAAGCCTAACTCACAGGATCTGGAGCCTCCTGAGGATAATTCGGGAAAGACACTGTCTGATGAGCTCTCAGCTTTTGAGATGAAGTACTTTCAGACCCCATATCTCGATGAGAGCTGGGATGCTTCAGTGGACGCGTTCCTCAACGGTGACGCAACTCAGGATGGTGGTAATCCAATGGACCTTTGGAGCTTTGATGATCTGCCCGCAATTGTTGGGGGAGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0008150 GO:0009593 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0036293 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0060255 GO:0065007 GO:0070482 GO:0070483 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

387

Amino Acids

43.12

Weight (kDa)

4.67

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	113 - 162	3.7e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53910 AT1G53910 AT1G53910 AT3G14230 AT3G14230 AT3G14230
fragaria_vesca	FvH4_6g35670
malus_domestica	MD09G1174400.v1.1 MD17G1152400.v1.1
prunus_persica	Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1
pyrus_communis	pycom09g09150 pycom17g14570
rosa_chinensis	RchiOBHm_Chr2g0147651
rosa_laevigata	RLG00000020267
rosa_roxburghii	Rroxscaffold_2G00099420
rosa_rugosa	Rorug02G0400600
rosa_samantha	Rh2AG458000 Rh2BG470600 Rh2CG445400 Rh2DG479800
rosa_wichuraiana	Rw2G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	483, 1067
AciI	CCGC	6 cut(s)	49, 60, 106, 273, 483, 1137
AclWI	GGATC	2 cut(s)	379, 957
AcsI	RAATTY	3 cut(s)	348, 477, 613
AcuI	CTGAAG	3 cut(s)	143, 531, 1041
AfaI	GTAC	3 cut(s)	42, 341, 1019
AfiI	CCNNNNNNNGG	5 cut(s)	98, 99, 343, 401, 904
AflIII	ACRYGT	2 cut(s)	702, 1065
AgsI	TTSAA	5 cut(s)	178, 223, 430, 586, 619
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	6 cut(s)	305, 446, 997, 1004, 1047, 1122
AluI	AGCT	6 cut(s)	305, 446, 997, 1004, 1047, 1122
Alw21I	GWGCWC	2 cut(s)	658, 999
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	379, 957
AlwNI	CAGNNNCTG	1 cut(s)	952
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	377, 446
ApoI	RAATTY	3 cut(s)	348, 477, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspLEI	GCGC	2 cut(s)	37, 360
AspS9I	GGNCC	3 cut(s)	45, 75, 1111
AsuHPI	GGTGA	2 cut(s)	49, 1091
AvaII	GGWCC	2 cut(s)	45, 1111
AxyI	CCTNAGG	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	999
BarI	GAAGNNNNNNTAC	2 cut(s)	323, 355
BauI	CACGAG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	2 cut(s)	658, 999
BbvI	GCAGC	2 cut(s)	364, 433
BccI	CCATC	4 cut(s)	290, 551, 760, 1088
BciT130I	CCWGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	384
BfmI	CTRYAG	3 cut(s)	378, 435, 649
BfoI	RGCGCY	2 cut(s)	38, 361
BisI	GCNGC	4 cut(s)	107, 378, 447, 484
BlsI	GCNGC	4 cut(s)	108, 379, 448, 485
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	2 cut(s)	45, 1111
BmgT120I	GGNCC	3 cut(s)	45, 75, 1111
BmiI	GGNNCC	2 cut(s)	47, 957
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	451, 1042
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	848
BpmI	CTGGAG	3 cut(s)	831, 926, 974
BpuEI	CTTGAG	1 cut(s)	619
BsaAI	YACGTR	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	3 cut(s)	362, 395, 465
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 99, 343, 401, 904
Bse118I	RCCGGY	2 cut(s)	37, 51
Bse1I	ACTGG	2 cut(s)	93, 337
Bse21I	CCTNAGG	1 cut(s)	963
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	3 cut(s)	362, 395, 465
BseGI	GGATG	4 cut(s)	676, 857, 1057, 1099
BseLI	CCNNNNNNNGG	5 cut(s)	98, 99, 343, 401, 904
BseMII	CTCAG	6 cut(s)	297, 572, 608, 954, 1014, 1103
BseNI	ACTGG	2 cut(s)	93, 337
BseXI	GCAGC	2 cut(s)	364, 433
BseYI	CCCAGC	2 cut(s)	822, 1047
Bsh1236I	CGCG	2 cut(s)	483, 1067
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	658, 999
BsiSI	CCGG	3 cut(s)	38, 52, 243
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	5 cut(s)	98, 99, 343, 401, 904
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	658, 999
Bsp143I	GATC	5 cut(s)	79, 384, 784, 949, 1129
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	6 cut(s)	49, 60, 106, 273, 483, 1137
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	6 cut(s)	298, 571, 607, 955, 1013, 1102
BspFNI	CGCG	2 cut(s)	483, 1067
BspLI	GGNNCC	2 cut(s)	47, 957
BspMAI	CTGCAG	2 cut(s)	382, 439
BspPI	GGATC	2 cut(s)	379, 957
BspTNI	GGTCTC	1 cut(s)	384
BsrFI	RCCGGY	2 cut(s)	37, 51
BsrI	ACTGG	2 cut(s)	93, 337
BssAI	RCCGGY	2 cut(s)	37, 51
BssECI	CCNNGG	3 cut(s)	362, 395, 465
BssMI	GATC	5 cut(s)	79, 384, 784, 949, 1129
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	362, 395
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	4 cut(s)	45, 653, 987, 1079
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	4 cut(s)	53, 303, 356, 1137
BstDEI	CTNAG	6 cut(s)	306, 558, 594, 963, 1000, 1089
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	4 cut(s)	676, 857, 1057, 1099
BstFNI	CGCG	2 cut(s)	483, 1067
BstH2I	RGCGCY	2 cut(s)	38, 361
BstHHI	GCGC	2 cut(s)	37, 360
BstKTI	GATC	5 cut(s)	82, 387, 787, 952, 1132
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	5 cut(s)	79, 384, 784, 949, 1129
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 239, 443, 452, 461
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	3 cut(s)	378, 435, 649
BstUI	CGCG	2 cut(s)	483, 1067
BstV1I	GCAGC	2 cut(s)	364, 433
BstV2I	GAAGAC	1 cut(s)	848
BstX2I	RGATCY	2 cut(s)	384, 949
BstYI	RGATCY	2 cut(s)	384, 949
Bsu36I	CCTNAGG	1 cut(s)	963
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	4 cut(s)	676, 857, 1057, 1099
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	5 cut(s)	432, 658, 734, 983, 1065
Cac8I	GCNNGC	4 cut(s)	53, 303, 356, 1137
CaiI	CAGNNNCTG	1 cut(s)	952
CfoI	GCGC	2 cut(s)	37, 360
Cfr10I	RCCGGY	2 cut(s)	37, 51
Cfr13I	GGNCC	3 cut(s)	45, 75, 1111
CseI	GACGC	2 cut(s)	1073, 1091
Csp6I	GTAC	3 cut(s)	41, 340, 1018
CviAII	CATG	2 cut(s)	363, 703
CviQI	GTAC	3 cut(s)	41, 340, 1018
DdeI	CTNAG	6 cut(s)	306, 558, 594, 963, 1000, 1089
DpnI	GATC	5 cut(s)	81, 386, 786, 951, 1131
DpnII	GATC	5 cut(s)	79, 384, 784, 949, 1129
Ecl136II	GAGCTC	1 cut(s)	997
Eco130I	CCWWGG	2 cut(s)	362, 395
Eco24I	GRGCYC	1 cut(s)	999
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	45, 1111
Eco53kI	GAGCTC	1 cut(s)	997
Eco57I	CTGAAG	3 cut(s)	143, 531, 1041
Eco81I	CCTNAGG	1 cut(s)	963
EcoICRI	GAGCTC	1 cut(s)	997
EcoRI	GAATTC	2 cut(s)	348, 477
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	362, 395
EcoT38I	GRGCYC	1 cut(s)	999
ErhI	CCWWGG	2 cut(s)	362, 395
FaeI	CATG	2 cut(s)	366, 706
FaiI	YATR	6 cut(s)	32, 364, 459, 704, 878, 1033
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	362, 702
FauI	CCCGC	2 cut(s)	56, 1144
Fnu4HI	GCNGC	4 cut(s)	107, 378, 447, 484
FokI	GGATG	4 cut(s)	683, 844, 1064, 1106
FriOI	GRGCYC	1 cut(s)	999
Fsp4HI	GCNGC	4 cut(s)	107, 378, 447, 484
GlaI	GCGC	2 cut(s)	36, 359
GluI	GCNGC	4 cut(s)	107, 378, 447, 484
GsaI	CCCAGC	2 cut(s)	826, 1051
GsuI	CTGGAG	3 cut(s)	831, 926, 974
HaeII	RGCGCY	2 cut(s)	38, 361
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	3 cut(s)	38, 52, 243
HgaI	GACGC	2 cut(s)	1073, 1091
HhaI	GCGC	2 cut(s)	37, 360
Hin1II	CATG	2 cut(s)	366, 706
Hin6I	GCGC	2 cut(s)	35, 358
HinP1I	GCGC	2 cut(s)	35, 358
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	4 cut(s)	185, 632, 844, 911
HpaII	CCGG	3 cut(s)	38, 52, 243
HphI	GGTGA	2 cut(s)	49, 1091
Hpy166II	GTNNAC	5 cut(s)	139, 196, 628, 708, 1063
Hpy188III	TCNNGA	9 cut(s)	112, 668, 848, 905, 953, 962, 975, 1037, 1091
Hpy8I	GTNNAC	5 cut(s)	139, 196, 628, 708, 1063
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	490, 721
HpyCH4III	ACNGT	4 cut(s)	45, 653, 987, 1079
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	6 cut(s)	317, 380, 437, 449, 533, 734
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 239, 443, 452, 461
HpyF3I	CTNAG	6 cut(s)	306, 558, 594, 963, 1000, 1089
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	2 cut(s)	366, 706
HspAI	GCGC	2 cut(s)	35, 358
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	79, 384, 784, 949, 1129
LmnI	GCTCC	2 cut(s)	955, 1119
Lsp1109I	GCAGC	2 cut(s)	364, 433
LweI	GCATC	2 cut(s)	451, 1042
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	1079
MalI	GATC	5 cut(s)	81, 386, 786, 951, 1131
MboI	GATC	5 cut(s)	79, 384, 784, 949, 1129
MboII	GAAGA	6 cut(s)	343, 452, 524, 737, 853, 940
MfeI	CAATTG	1 cut(s)	1140
MflI	RGATCY	2 cut(s)	384, 949
MhlI	GDGCHC	2 cut(s)	658, 999
MluCI	AATT	8 cut(s)	348, 477, 502, 563, 613, 619, 970, 1140
MluI	ACGCGT	1 cut(s)	1065
MlyI	GAGTC	3 cut(s)	194, 626, 838
MroNI	GCCGGC	1 cut(s)	51
MseI	TTAA	2 cut(s)	501, 1159
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	38, 52, 243
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	1140
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	2 cut(s)	483, 1067
MwoI	GCNNNNNNNGC	5 cut(s)	115, 239, 443, 452, 461
NaeI	GCCGGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	5 cut(s)	79, 384, 784, 949, 1129
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	366, 706
NlaIV	GGNNCC	2 cut(s)	47, 957
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	1079
NspI	RCATGY	1 cut(s)	706
PciI	ACATGT	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	911
PflFI	GACNNNGTC	1 cut(s)	985
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	108, 379, 448, 485
PleI	GAGTC	3 cut(s)	193, 626, 838
PpsI	GAGTC	3 cut(s)	193, 626, 838
Ppu21I	YACGTR	1 cut(s)	473
PscI	ACATGT	1 cut(s)	702
Psp124BI	GAGCTC	1 cut(s)	999
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	2 cut(s)	822, 1047
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	47, 957
PspPI	GGNCC	3 cut(s)	45, 75, 1111
PstI	CTGCAG	2 cut(s)	382, 439
PstNI	CAGNNNCTG	1 cut(s)	952
PsuI	RGATCY	2 cut(s)	384, 949
PsyI	GACNNNGTC	1 cut(s)	985
RsaI	GTAC	3 cut(s)	42, 341, 1019
RsaNI	GTAC	3 cut(s)	41, 340, 1018
SacI	GAGCTC	1 cut(s)	999
SaqAI	TTAA	2 cut(s)	501, 1159
SatI	GCNGC	4 cut(s)	107, 378, 447, 484
Sau3AI	GATC	5 cut(s)	79, 384, 784, 949, 1129
Sau96I	GGNCC	3 cut(s)	45, 75, 1111
ScaI	AGTACT	1 cut(s)	1019
SchI	GAGTC	3 cut(s)	194, 626, 838
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	658, 999
SfaNI	GCATC	2 cut(s)	451, 1042
SfcI	CTRYAG	3 cut(s)	378, 435, 649
SinI	GGWCC	2 cut(s)	45, 1111
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	8 cut(s)	348, 477, 502, 563, 613, 619, 970, 1140
SsiI	CCGC	6 cut(s)	49, 60, 106, 273, 483, 1137
SstI	GAGCTC	1 cut(s)	999
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	2 cut(s)	362, 395
TaaI	ACNGT	4 cut(s)	45, 653, 987, 1079
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	5 cut(s)	113, 156, 697, 839, 1038
TasI	AATT	8 cut(s)	348, 477, 502, 563, 613, 619, 970, 1140
TatI	WGTACW	2 cut(s)	339, 1017
TauI	GCSGC	2 cut(s)	109, 486
TfiI	GAWTC	1 cut(s)	911
Tru1I	TTAA	2 cut(s)	501, 1159
Tru9I	TTAA	2 cut(s)	501, 1159
TscAI	CASTG	5 cut(s)	439, 658, 741, 990, 1065
TseFI	GTSAC	1 cut(s)	1079
TseI	GCWGC	2 cut(s)	377, 446
Tsp45I	GTSAC	1 cut(s)	1079
TspDTI	ATGAA	8 cut(s)	19, 222, 687, 701, 738, 858, 947, 1028
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	5 cut(s)	439, 658, 741, 990, 1065
Tth111I	GACNNNGTC	1 cut(s)	985
VpaK11BI	GGWCC	2 cut(s)	45, 1111
XapI	RAATTY	3 cut(s)	348, 477, 613
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	2 cut(s)	369, 1113
ZrmI	AGTACT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.