Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008519

Physical Location & Seq

Genomic Coordinates Reverse (-)

69371247 .. 69376116

Gene Structure 4870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG479800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGTTTTTTTGTGTTTTATGTTAAATATGTTCTTTGCGTGTGTTTTGACATAAATCTCTTTCTAATTCTTGAAGGCTCCAAGACTGTGAAATCTGTGGAGTGCAATAGCCAAGCTGAGAAATCTGCAAAGAGGAAGAGGAAGAACCAGTATAGAGGAATTCGCCAGCGCCCATGGGGTAAGTGGGCTGCCGAGATCCGAGACCCAAGGAAAGGAGTCCGGGTTTGGCTCGGAACCTTCAACACTGCTGAAGAGGCTGCAAGGGCCTATGACGCTGAGGCACGTAGAATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAAGAACCCCCTCGTGCTTCTGCAAAGCGTGCTGTCAAGGCAAATCCTCAGAAAGTTCTACCCAAAACAAACTTGGACAATATCCAGTCTAATCTAAACCAGAACTTCAATTTTGTGAATGGCTCTGATCAAGATTACTACAATTCTATGAGTTTCCTGGAAGAGAAACCCCAAACTAATAATTTTGGATACATGGACTCTGTCCTTACCAATGGAGACTTTGGGCTGAAATCCTCCACTCTATCTGACCCTGCCCCTCTCTATTTCAGTTCTGATCAGGGAAGCAATTCCTTTGACTGTTCTGACTTTGGTTTGTTTGAACAAGGTTCAAAGACTCCTGAAATCTCATCTGTTCTTTCATCTGTTCTCGAAGAAAATGAGAACTCACTGTTTCTTGAGGATGCTAATCCAACCAAGAAACTGAAGGCTAACCCTGAGGATCTTGTGCCTGCTGAGAATAATGTTGTTCCAAAGACACTATCTGAGGAGTTGTCAGCTTTTGAGATGAAATATTGTCAGACGCCATATCTGGAGGGGAGCTGGGATACTTCCATCGATACCTTTCTCAATGGTGATGCAACCCAGGATGGTTGTAACCCAGTGGATCTTTGGAGCTTTGATGACCTTCCTTCAATGTCTGGGGGAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0008150 GO:0009593 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0036293 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0060255 GO:0065007 GO:0070482 GO:0070483 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

324

Amino Acids

36.4

Weight (kDa)

5.09

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	50 - 99	2.8e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53910 AT1G53910 AT1G53910 AT3G14230 AT3G14230 AT3G14230
fragaria_vesca	FvH4_6g35670
malus_domestica	MD09G1174400.v1.1 MD17G1152400.v1.1
prunus_persica	Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1
pyrus_communis	pycom09g09150 pycom17g14570
rosa_chinensis	RchiOBHm_Chr2g0147651
rosa_laevigata	RLG00000020267
rosa_roxburghii	Rroxscaffold_2G00099420
rosa_rugosa	Rorug02G0400600
rosa_samantha	Rh2AG458000 Rh2BG470600 Rh2CG445400 Rh2DG479800
rosa_wichuraiana	Rw2G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	190, 768, 933
AcsI	RAATTY	3 cut(s)	159, 288, 313
AcuI	CTGAAG	3 cut(s)	270, 342, 764
AcyI	GRCGYC	1 cut(s)	842
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	6 cut(s)	74, 241, 430, 641, 651, 954
AjnI	CCWGG	2 cut(s)	477, 903
AluBI	AGCT	4 cut(s)	116, 818, 861, 936
AluI	AGCT	4 cut(s)	116, 818, 861, 936
Alw26I	GTCTC	2 cut(s)	195, 531
AlwI	GGATC	3 cut(s)	190, 768, 933
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	188, 257
ApoI	RAATTY	3 cut(s)	159, 288, 313
Asp700I	GAANNNNTTC	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	322, 905
AxyI	CCTNAGG	1 cut(s)	756
BauI	CACGAG	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	175, 244
BccI	CCATC	2 cut(s)	881, 902
BciT130I	CCWGG	2 cut(s)	479, 905
BciVI	GTATCC	2 cut(s)	503, 859
BclI	TGATCA	2 cut(s)	448, 595
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	195, 531
BfoI	RGCGCY	1 cut(s)	172
BfuI	GTATCC	2 cut(s)	503, 859
BisI	GCNGC	2 cut(s)	189, 258
BlsI	GCNGC	2 cut(s)	190, 259
Bme1390I	CCNGG	3 cut(s)	221, 479, 905
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	79, 235
BmrFI	CCNGG	3 cut(s)	221, 479, 905
BmrI	ACTGGG	1 cut(s)	914
BmsI	GCATC	2 cut(s)	712, 886
BmuI	ACTGGG	1 cut(s)	914
BpmI	CTGGAG	1 cut(s)	872
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	876
BsaAI	YACGTR	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	173, 206, 306, 903
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	3 cut(s)	148, 406, 920
Bse21I	CCTNAGG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	479, 905
BseCI	ATCGAT	1 cut(s)	876
BseDI	CCNNGG	4 cut(s)	173, 206, 306, 903
BseGI	GGATG	2 cut(s)	727, 913
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	6 cut(s)	108, 267, 383, 747, 765, 795
BseNI	ACTGG	3 cut(s)	148, 406, 920
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	2 cut(s)	175, 244
BseYI	CCCAGC	1 cut(s)	861
BshFI	GGCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	195, 531
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	195, 448, 595, 760, 925
Bsp19I	CCATGG	1 cut(s)	173
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	6 cut(s)	109, 268, 382, 748, 766, 796
BspDI	ATCGAT	1 cut(s)	876
BspLI	GGNNCC	2 cut(s)	79, 235
BspPI	GGATC	3 cut(s)	190, 768, 933
BspTNI	GGTCTC	1 cut(s)	195
BsrI	ACTGG	3 cut(s)	148, 406, 920
BssECI	CCNNGG	4 cut(s)	173, 206, 306, 903
BssMI	GATC	5 cut(s)	195, 448, 595, 760, 925
BssNI	GRCGYC	1 cut(s)	842
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	3 cut(s)	173, 206, 306
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	479, 905
Bst4CI	ACNGT	3 cut(s)	88, 620, 711
Bst6I	CTCTTC	3 cut(s)	131, 246, 477
BstACI	GRCGYC	1 cut(s)	842
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	167, 351, 771
BstDEI	CTNAG	6 cut(s)	117, 276, 369, 756, 774, 804
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	727, 913
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	5 cut(s)	198, 451, 598, 763, 928
BstMAI	GTCTC	2 cut(s)	195, 531
BstMBI	GATC	5 cut(s)	195, 448, 595, 760, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 263, 272, 350, 359
BstNI	CCWGG	2 cut(s)	479, 905
BstSCI	CCNGG	3 cut(s)	219, 477, 903
BstV1I	GCAGC	2 cut(s)	175, 244
BstX2I	RGATCY	3 cut(s)	195, 760, 925
BstYI	RGATCY	3 cut(s)	195, 760, 925
Bsu15I	ATCGAT	1 cut(s)	876
Bsu36I	CCTNAGG	1 cut(s)	756
BsuI	GTATCC	2 cut(s)	503, 859
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	876
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	727, 913
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	243, 707, 927
Cac8I	GCNNGC	3 cut(s)	167, 351, 771
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	264
ClaI	ATCGAT	1 cut(s)	876
CseI	GACGC	2 cut(s)	281, 850
CviAII	CATG	2 cut(s)	174, 514
DdeI	CTNAG	6 cut(s)	117, 276, 369, 756, 774, 804
DpnI	GATC	5 cut(s)	197, 450, 597, 762, 927
DpnII	GATC	5 cut(s)	195, 448, 595, 760, 925
Eam1104I	CTCTTC	3 cut(s)	131, 246, 477
EarI	CTCTTC	3 cut(s)	131, 246, 477
Eco130I	CCWWGG	3 cut(s)	173, 206, 306
Eco31I	GGTCTC	1 cut(s)	195
Eco57I	CTGAAG	3 cut(s)	270, 342, 764
Eco81I	CCTNAGG	1 cut(s)	756
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRI	GAATTC	2 cut(s)	159, 288
EcoRII	CCWGG	2 cut(s)	477, 903
EcoT14I	CCWWGG	3 cut(s)	173, 206, 306
ErhI	CCWWGG	3 cut(s)	173, 206, 306
FaeI	CATG	2 cut(s)	177, 517
FaiI	YATR	9 cut(s)	21, 30, 53, 153, 175, 270, 470, 515, 847
FatI	CATG	2 cut(s)	173, 513
FbaI	TGATCA	2 cut(s)	448, 595
Fnu4HI	GCNGC	2 cut(s)	189, 258
FokI	GGATG	2 cut(s)	734, 920
Fsp4HI	GCNGC	2 cut(s)	189, 258
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	189, 258
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	1 cut(s)	872
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	2 cut(s)	281, 850
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	842
Hin1II	CATG	2 cut(s)	177, 517
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	216, 518, 655
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	322, 905
Hpy188I	TCNGA	9 cut(s)	200, 233, 372, 448, 568, 595, 625, 805, 840
Hpy188III	TCNNGA	7 cut(s)	71, 320, 452, 659, 689, 716, 851
HpyAV	CCTTC	5 cut(s)	68, 247, 739, 956, 960
HpyCH4III	ACNGT	3 cut(s)	88, 620, 711
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	105, 128, 260, 344, 899
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 263, 272, 350, 359
HpyF3I	CTNAG	6 cut(s)	117, 276, 369, 756, 774, 804
HpySE526I	ACGT	1 cut(s)	283
Hsp92I	GRCGYC	1 cut(s)	842
Hsp92II	CATG	2 cut(s)	177, 517
HspAI	GCGC	1 cut(s)	169
Ksp22I	TGATCA	2 cut(s)	448, 595
Kzo9I	GATC	5 cut(s)	195, 448, 595, 760, 925
LmnI	GCTCC	3 cut(s)	83, 858, 933
Lsp1109I	GCAGC	2 cut(s)	175, 244
LweI	GCATC	2 cut(s)	712, 886
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	914
MalI	GATC	5 cut(s)	197, 450, 597, 762, 927
MboI	GATC	5 cut(s)	195, 448, 595, 760, 925
MboII	GAAGA	6 cut(s)	148, 154, 263, 335, 494, 704
MflI	RGATCY	3 cut(s)	195, 760, 925
MluCI	AATT	8 cut(s)	66, 159, 288, 313, 430, 463, 502, 607
MlyI	GAGTC	3 cut(s)	225, 512, 649
MmeI	TCCRAC	1 cut(s)	755
MroXI	GAANNNNTTC	1 cut(s)	607
MseI	TTAA	1 cut(s)	24
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	3 cut(s)	221, 479, 905
MvaI	CCWGG	2 cut(s)	479, 905
MwoI	GCNNNNNNNGC	5 cut(s)	254, 263, 272, 350, 359
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	5 cut(s)	195, 448, 595, 760, 925
NlaIII	CATG	2 cut(s)	177, 517
NlaIV	GGNNCC	2 cut(s)	79, 235
NmeAIII	GCCGAG	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	607
PflFI	GACNNNGTC	1 cut(s)	521
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	2 cut(s)	190, 259
PleI	GAGTC	3 cut(s)	224, 512, 649
PpsI	GAGTC	3 cut(s)	224, 512, 649
Ppu21I	YACGTR	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	477, 903
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	2 cut(s)	477, 903
PspN4I	GGNNCC	2 cut(s)	79, 235
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	3 cut(s)	195, 760, 925
PsyI	GACNNNGTC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	2 cut(s)	189, 258
Sau3AI	GATC	5 cut(s)	195, 448, 595, 760, 925
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	3 cut(s)	225, 512, 649
ScrFI	CCNGG	3 cut(s)	221, 479, 905
SfaNI	GCATC	2 cut(s)	712, 886
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	8 cut(s)	66, 159, 288, 313, 430, 463, 502, 607
SspI	AATATT	1 cut(s)	833
StyD4I	CCNGG	3 cut(s)	219, 477, 903
StyI	CCWWGG	3 cut(s)	173, 206, 306
TaaI	ACNGT	3 cut(s)	88, 620, 711
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	690, 876
TasI	AATT	8 cut(s)	66, 159, 288, 313, 430, 463, 502, 607
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	3 cut(s)	250, 714, 927
TseI	GCWGC	2 cut(s)	188, 257
TspDTI	ATGAA	2 cut(s)	669, 842
TspRI	CASTG	3 cut(s)	250, 714, 927
Tth111I	GACNNNGTC	1 cut(s)	521
XapI	RAATTY	3 cut(s)	159, 288, 313
XcmI	CCANNNNNNNNNTGG	3 cut(s)	180, 391, 927
XmnI	GAANNNNTTC	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.