Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008519

Physical Location & Seq

Genomic Coordinates Reverse (-)

63040004 .. 63042275

Gene Structure 2272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTGTGGAGGTGCTATTATTTCCGATTTCATCCCCGCTGCGACGCGGTCCCGGCGAGTCACCGCCGGCCTCCTCTGGCCTGATCTCAAGAAATCCAGCTTCGGCAAGCGGGTCTCCGCCGGCGGCCATCCTCTCCGGTCCCAAATCCTTGGATTGGACGACGATTTCGAGGCTGATTTCCAGGGATTCAAGGACGAGTCTGATGTGGACGACGATGAGGAGATGGTCGATTCCAAGCCCTTCGCTTTCTCCGCCGGAAAAACGACCTCTTCTGCTGCGCGTGGCTCCAAGACTGTGAAATCTGTGGAGTGCAATAGCCAAGCTGAGAAATCTGCAAAAAGGAAAAGGAAGAACCAGTATAGAGGAATTCGTCAGCGCCCATGGGGTAAGTGGGCTGCCGAGATCCGAGACCCAAGGAAAGGAGTCCGGGTTTGGCTCGGAACCTTCAACACTGCTGAAGAGGCTGCAAGGGCCTATGACGCTGAGGCACGTAGAATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAAGAAACCCCTCGTGCTTCTGCAAAGCGTGCTGTCAAGGCAAATCCTCAGAAAGTTGTACCCAAGACAAACTTGGACAATATCCAGTCTAATCTGAACCAGAACTTCAATTTTGTGAATGGCTCTGATCAAGATTACTACAATTCGATGAGTTTCTTGGAAGAGAAACCCCAAACTAATAATTTTGGGTACATGGACTCTGTCCTTACCAATGGAGACTTTGGGCTGAAATCCTCCACTCTATCTGACCCTGCTGCTCTGTATTTCAGTTCTGATCAGGGAAGCAATTCTCTTGACTGTTCTGACTTTGGCTGGGGAGAGCAAGGTTCAAAGACTCCTGAAATCTCATCTGTTCTTTCATCTGTTCTCGAAGAAAATGAGAACTCACTGTTTCTTGAGGATGCTAATCCAACCAAGAAACTGAAGGCTAACCCTGAGGATCTTGTGCCTGCTGAGAATAATGTTGTTCCAAAGACACTATCCGAGGAGTTGTCAGCTTTTGAGATGAAATATTGTCAGACGCCATATCTGGAGGGGAGCTGGGATACTTCCATTGATACCTTTCTCAATGGTGATGCTACCCAGGATGGTTGTAACCCAGTGGATCTTTGGAGCTTTGATGACCTTCCTTCAATGTCTGGGGGAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003032 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0008150 GO:0009593 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0036293 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0060255 GO:0065007 GO:0070482 GO:0070483 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

394

Amino Acids

43.35

Weight (kDa)

5.05

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	119 - 168	3.8e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53910 AT1G53910 AT1G53910 AT3G14230 AT3G14230 AT3G14230
fragaria_vesca	FvH4_6g35670
malus_domestica	MD09G1174400.v1.1 MD17G1152400.v1.1
prunus_persica	Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1 Prupe.3G032300_v2.0.a1
pyrus_communis	pycom09g09150 pycom17g14570
rosa_chinensis	RchiOBHm_Chr2g0147651
rosa_laevigata	RLG00000020267
rosa_roxburghii	Rroxscaffold_2G00099420
rosa_rugosa	Rorug02G0400600
rosa_samantha	Rh2AG458000 Rh2BG470600 Rh2CG445400 Rh2DG479800
rosa_wichuraiana	Rw2G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	46, 280
AciI	CCGC	7 cut(s)	36, 46, 63, 109, 117, 123, 252
AclWI	GGATC	3 cut(s)	397, 975, 1140
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	3 cut(s)	366, 495, 520
AcuI	CTGAAG	3 cut(s)	477, 549, 971
AcyI	GRCGYC	1 cut(s)	1049
AfaI	GTAC	2 cut(s)	588, 719
AfiI	CCNNNNNNNGG	2 cut(s)	154, 419
AgsI	TTSAA	5 cut(s)	190, 448, 637, 858, 1161
AjnI	CCWGG	2 cut(s)	180, 1110
AluBI	AGCT	5 cut(s)	99, 323, 1025, 1068, 1143
AluI	AGCT	5 cut(s)	99, 323, 1025, 1068, 1143
Alw26I	GTCTC	3 cut(s)	118, 402, 738
AlwI	GGATC	3 cut(s)	397, 975, 1140
AoxI	GGCC	4 cut(s)	67, 77, 124, 471
ApeKI	GCWGC	5 cut(s)	38, 275, 395, 464, 782
ApoI	RAATTY	3 cut(s)	366, 495, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	1 cut(s)	814
AspLEI	GCGC	2 cut(s)	280, 378
AspS9I	GGNCC	3 cut(s)	48, 138, 471
AsuC2I	CCSGG	2 cut(s)	52, 428
AsuHPI	GGTGA	3 cut(s)	52, 529, 1112
AvaII	GGWCC	2 cut(s)	48, 138
AxyI	CCTNAGG	1 cut(s)	963
BauI	CACGAG	1 cut(s)	540
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	5 cut(s)	25, 262, 382, 451, 769
BccI	CCATC	3 cut(s)	135, 217, 1109
BciT130I	CCWGG	2 cut(s)	182, 1112
BciVI	GTATCC	1 cut(s)	1066
BclI	TGATCA	2 cut(s)	655, 802
BcnI	CCSGG	2 cut(s)	52, 428
BcoDI	GTCTC	3 cut(s)	118, 402, 738
BfoI	RGCGCY	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	1066
BisI	GCNGC	6 cut(s)	39, 124, 276, 396, 465, 783
BlsI	GCNGC	6 cut(s)	40, 125, 277, 397, 466, 784
Bme1390I	CCNGG	4 cut(s)	52, 182, 428, 1112
Bme18I	GGWCC	2 cut(s)	48, 138
BmgT120I	GGNCC	3 cut(s)	48, 138, 471
BmiI	GGNNCC	4 cut(s)	50, 140, 286, 442
BmrFI	CCNGG	4 cut(s)	52, 182, 428, 1112
BmrI	ACTGGG	1 cut(s)	1121
BmsI	GCATC	2 cut(s)	919, 1093
BmuI	ACTGGG	1 cut(s)	1121
BpmI	CTGGAG	1 cut(s)	1079
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	71, 944
BpuMI	CCSGG	2 cut(s)	52, 428
BsaAI	YACGTR	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	933
BsaHI	GRCGYC	1 cut(s)	1049
BsaI	GGTCTC	2 cut(s)	118, 402
BsaJI	CCNNGG	7 cut(s)	148, 181, 380, 413, 513, 1011, 1110
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 419
Bse118I	RCCGGY	2 cut(s)	65, 119
Bse1I	ACTGG	3 cut(s)	355, 613, 1127
Bse21I	CCTNAGG	1 cut(s)	963
Bse8I	GATNNNNATC	1 cut(s)	933
BseBI	CCWGG	2 cut(s)	182, 1112
BseDI	CCNNGG	7 cut(s)	148, 181, 380, 413, 513, 1011, 1110
BseGI	GGATG	4 cut(s)	30, 127, 934, 1120
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	2 cut(s)	154, 419
BseMII	CTCAG	5 cut(s)	315, 474, 590, 954, 972
BseNI	ACTGG	3 cut(s)	355, 613, 1127
BseRI	GAGGAG	3 cut(s)	62, 233, 1028
BseXI	GCAGC	5 cut(s)	25, 262, 382, 451, 769
BseYI	CCCAGC	2 cut(s)	840, 1068
Bsh1236I	CGCG	2 cut(s)	46, 280
BshFI	GGCC	4 cut(s)	69, 79, 126, 473
BsiSI	CCGG	6 cut(s)	52, 66, 120, 136, 255, 427
BslFI	GGGAC	2 cut(s)	34, 124
BslI	CCNNNNNNNGG	2 cut(s)	154, 419
BsmAI	GTCTC	3 cut(s)	118, 402, 738
BsmFI	GGGAC	2 cut(s)	34, 124
BsnI	GGCC	4 cut(s)	69, 79, 126, 473
Bso31I	GGTCTC	2 cut(s)	118, 402
Bsp143I	GATC	6 cut(s)	82, 402, 655, 802, 967, 1132
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	7 cut(s)	36, 46, 63, 109, 117, 123, 252
BspANI	GGCC	4 cut(s)	69, 79, 126, 473
BspCNI	CTCAG	5 cut(s)	316, 475, 589, 955, 973
BspFNI	CGCG	2 cut(s)	46, 280
BspLI	GGNNCC	4 cut(s)	50, 140, 286, 442
BspPI	GGATC	3 cut(s)	397, 975, 1140
BspTNI	GGTCTC	2 cut(s)	118, 402
BsrFI	RCCGGY	2 cut(s)	65, 119
BsrI	ACTGG	3 cut(s)	355, 613, 1127
BssAI	RCCGGY	2 cut(s)	65, 119
BssECI	CCNNGG	7 cut(s)	148, 181, 380, 413, 513, 1011, 1110
BssMI	GATC	6 cut(s)	82, 402, 655, 802, 967, 1132
BssNI	GRCGYC	1 cut(s)	1049
BssSI	CACGAG	1 cut(s)	540
BssT1I	CCWWGG	4 cut(s)	148, 380, 413, 513
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	182, 1112
Bst4CI	ACNGT	3 cut(s)	295, 827, 918
Bst6I	CTCTTC	3 cut(s)	274, 453, 684
BstACI	GRCGYC	1 cut(s)	1049
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstBAI	YACGTR	1 cut(s)	491
BstC8I	GCNNGC	5 cut(s)	67, 107, 121, 558, 978
BstDEI	CTNAG	5 cut(s)	324, 483, 576, 963, 981
BstDSI	CCRYGG	1 cut(s)	380
BstF5I	GGATG	4 cut(s)	30, 127, 934, 1120
BstFNI	CGCG	2 cut(s)	46, 280
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	2 cut(s)	280, 378
BstKTI	GATC	6 cut(s)	85, 405, 658, 805, 970, 1135
BstMAI	GTCTC	3 cut(s)	118, 402, 738
BstMBI	GATC	6 cut(s)	82, 402, 655, 802, 967, 1132
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 251, 461, 470, 479, 557, 566
BstNI	CCWGG	2 cut(s)	182, 1112
BstSCI	CCNGG	4 cut(s)	50, 180, 426, 1110
BstUI	CGCG	2 cut(s)	46, 280
BstV1I	GCAGC	5 cut(s)	25, 262, 382, 451, 769
BstX2I	RGATCY	3 cut(s)	402, 967, 1132
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	3 cut(s)	402, 967, 1132
Bsu36I	CCTNAGG	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	1066
BsuRI	GGCC	4 cut(s)	69, 79, 126, 473
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	4 cut(s)	30, 127, 934, 1120
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	3 cut(s)	450, 914, 1134
Cac8I	GCNNGC	5 cut(s)	67, 107, 121, 558, 978
CfoI	GCGC	2 cut(s)	280, 378
Cfr10I	RCCGGY	2 cut(s)	65, 119
Cfr13I	GGNCC	3 cut(s)	48, 138, 471
CseI	GACGC	3 cut(s)	52, 488, 1057
Csp6I	GTAC	2 cut(s)	587, 718
CviAII	CATG	2 cut(s)	381, 721
CviQI	GTAC	2 cut(s)	587, 718
DdeI	CTNAG	5 cut(s)	324, 483, 576, 963, 981
DpnI	GATC	6 cut(s)	84, 404, 657, 804, 969, 1134
DpnII	GATC	6 cut(s)	82, 402, 655, 802, 967, 1132
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	3 cut(s)	274, 453, 684
EarI	CTCTTC	3 cut(s)	274, 453, 684
EciI	GGCGGA	2 cut(s)	106, 241
Eco130I	CCWWGG	4 cut(s)	148, 380, 413, 513
Eco31I	GGTCTC	2 cut(s)	118, 402
Eco47I	GGWCC	2 cut(s)	48, 138
Eco57I	CTGAAG	3 cut(s)	477, 549, 971
Eco81I	CCTNAGG	1 cut(s)	963
EcoO109I	RGGNCCY	1 cut(s)	471
EcoRI	GAATTC	2 cut(s)	366, 495
EcoRII	CCWGG	2 cut(s)	180, 1110
EcoT14I	CCWWGG	4 cut(s)	148, 380, 413, 513
ErhI	CCWWGG	4 cut(s)	148, 380, 413, 513
FaeI	CATG	2 cut(s)	384, 724
FaiI	YATR	5 cut(s)	360, 382, 477, 722, 1054
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FaqI	GGGAC	2 cut(s)	34, 124
FatI	CATG	2 cut(s)	380, 720
FauI	CCCGC	2 cut(s)	43, 102
FbaI	TGATCA	2 cut(s)	655, 802
Fnu4HI	GCNGC	6 cut(s)	39, 124, 276, 396, 465, 783
FokI	GGATG	4 cut(s)	17, 114, 941, 1127
Fsp4HI	GCNGC	6 cut(s)	39, 124, 276, 396, 465, 783
GlaI	GCGC	2 cut(s)	279, 377
GluI	GCNGC	6 cut(s)	39, 124, 276, 396, 465, 783
GsaI	CCCAGC	2 cut(s)	844, 1072
GsuI	CTGGAG	1 cut(s)	1079
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	4 cut(s)	69, 79, 126, 473
HapII	CCGG	6 cut(s)	52, 66, 120, 136, 255, 427
HgaI	GACGC	3 cut(s)	52, 488, 1057
HhaI	GCGC	2 cut(s)	280, 378
Hin1I	GRCGYC	1 cut(s)	1049
Hin1II	CATG	2 cut(s)	384, 724
Hin6I	GCGC	2 cut(s)	278, 376
HinP1I	GCGC	2 cut(s)	278, 376
HinfI	GANTC	7 cut(s)	57, 186, 197, 230, 423, 725, 862
HpaII	CCGG	6 cut(s)	52, 66, 120, 136, 255, 427
HphI	GGTGA	3 cut(s)	52, 529, 1112
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	8 cut(s)	88, 527, 659, 821, 866, 896, 923, 1058
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	46, 164, 215
HpyAV	CCTTC	5 cut(s)	250, 454, 946, 1163, 1167
HpyCH4III	ACNGT	3 cut(s)	295, 827, 918
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	4 cut(s)	312, 335, 467, 551
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 251, 461, 470, 479, 557, 566
HpyF3I	CTNAG	5 cut(s)	324, 483, 576, 963, 981
HpySE526I	ACGT	1 cut(s)	490
Hsp92I	GRCGYC	1 cut(s)	1049
Hsp92II	CATG	2 cut(s)	384, 724
HspAI	GCGC	2 cut(s)	278, 376
KroI	GCCGGC	2 cut(s)	65, 119
KroNI	GCCGGC	2 cut(s)	67, 121
Ksp22I	TGATCA	2 cut(s)	655, 802
Kzo9I	GATC	6 cut(s)	82, 402, 655, 802, 967, 1132
LmnI	GCTCC	3 cut(s)	290, 1065, 1140
Lsp1109I	GCAGC	5 cut(s)	25, 262, 382, 451, 769
LweI	GCATC	2 cut(s)	919, 1093
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	2 cut(s)	58, 1121
MalI	GATC	6 cut(s)	84, 404, 657, 804, 969, 1134
MboI	GATC	6 cut(s)	82, 402, 655, 802, 967, 1132
MboII	GAAGA	6 cut(s)	261, 361, 470, 542, 701, 911
MflI	RGATCY	3 cut(s)	402, 967, 1132
MluCI	AATT	7 cut(s)	366, 495, 520, 637, 670, 709, 814
MlyI	GAGTC	5 cut(s)	66, 206, 432, 719, 856
MmeI	TCCRAC	1 cut(s)	962
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	2 cut(s)	65, 119
MroXI	GAANNNNTTC	1 cut(s)	814
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	6 cut(s)	52, 66, 120, 136, 255, 427
MspR9I	CCNGG	4 cut(s)	52, 182, 428, 1112
MvaI	CCWGG	2 cut(s)	182, 1112
MvnI	CGCG	2 cut(s)	46, 280
MwoI	GCNNNNNNNGC	7 cut(s)	52, 251, 461, 470, 479, 557, 566
NaeI	GCCGGC	2 cut(s)	67, 121
NciI	CCSGG	2 cut(s)	52, 428
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	6 cut(s)	82, 402, 655, 802, 967, 1132
NgoMIV	GCCGGC	2 cut(s)	65, 119
NlaIII	CATG	2 cut(s)	384, 724
NlaIV	GGNNCC	4 cut(s)	50, 140, 286, 442
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 496
PdiI	GCCGGC	2 cut(s)	67, 121
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	2 cut(s)	186, 230
PflFI	GACNNNGTC	2 cut(s)	46, 728
PkrI	GCNGC	6 cut(s)	40, 125, 277, 397, 466, 784
PleI	GAGTC	5 cut(s)	65, 205, 431, 719, 856
PpsI	GAGTC	5 cut(s)	65, 205, 431, 719, 856
Ppu21I	YACGTR	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	180, 1110
PspFI	CCCAGC	2 cut(s)	840, 1068
PspGI	CCWGG	2 cut(s)	180, 1110
PspN4I	GGNNCC	4 cut(s)	50, 140, 286, 442
PspPI	GGNCC	3 cut(s)	48, 138, 471
PsuI	RGATCY	3 cut(s)	402, 967, 1132
PsyI	GACNNNGTC	2 cut(s)	46, 728
RsaI	GTAC	2 cut(s)	588, 719
RsaNI	GTAC	2 cut(s)	587, 718
SatI	GCNGC	6 cut(s)	39, 124, 276, 396, 465, 783
Sau3AI	GATC	6 cut(s)	82, 402, 655, 802, 967, 1132
Sau96I	GGNCC	3 cut(s)	48, 138, 471
SchI	GAGTC	5 cut(s)	66, 206, 432, 719, 856
ScrFI	CCNGG	4 cut(s)	52, 182, 428, 1112
SfaNI	GCATC	2 cut(s)	919, 1093
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	48, 138
SmlI	CTYRAG	2 cut(s)	86, 923
SmoI	CTYRAG	2 cut(s)	86, 923
Sse9I	AATT	7 cut(s)	366, 495, 520, 637, 670, 709, 814
SsiI	CCGC	7 cut(s)	36, 46, 63, 109, 117, 123, 252
SspI	AATATT	1 cut(s)	1040
StyD4I	CCNGG	4 cut(s)	50, 180, 426, 1110
StyI	CCWWGG	4 cut(s)	148, 380, 413, 513
TaaI	ACNGT	3 cut(s)	295, 827, 918
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	4 cut(s)	168, 228, 674, 897
TasI	AATT	7 cut(s)	366, 495, 520, 637, 670, 709, 814
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	186, 230
TscAI	CASTG	3 cut(s)	457, 921, 1134
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	5 cut(s)	38, 275, 395, 464, 782
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	19, 876, 1049
TspRI	CASTG	3 cut(s)	457, 921, 1134
Tth111I	GACNNNGTC	2 cut(s)	46, 728
VpaK11BI	GGWCC	2 cut(s)	48, 138
XapI	RAATTY	3 cut(s)	366, 495, 520
XcmI	CCANNNNNNNNNTGG	3 cut(s)	387, 598, 1134
XmnI	GAANNNNTTC	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.