AT1G54100

Aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
20194712 .. 20199193
4482 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54100.2

Sequence Viewer

Length: 1527 bp
ATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGAGATTGGGCTGACTTCTCACAACTTGGGATCTTACGTTGCTGGCAAATGGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAGCCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGAAAGCTTGCGAGGAAGCAGCTAAAATATGGATGCAGGTTACGGCTCCTAAGAGAGGTGATATCGTCAGACAGATTGGGGATGCACTAAGATCCAAACTTGACTATCTTGGTCGTCTTCTTTCTCTTGAAATGGGAAAGATCCTTGCTGAAGGTATTGGAGAAGTTCAGGAAGTAATTGACATGTGTGATTTTGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACGCCCTAACCACATGATGTTGGAGATGTGGAATCCTCTTGGCATTGTTGGTGTTATCACAGCGTTTAATTTTCCCTGTGCAGTTCTTGGTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGTAGCTGAAGTTTTAGAGAAAAACAACTTACCCGGTGCCATTTTTACGGCCATGTGTGGTGGTGCTGAAATTGGTGAAGCAATAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGCTCCAGGGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGCTTGAGTTGAGTGGAAACAATGCAATCATAGTCATGGACGATGCTGATATACAGTTAGCGGCTCGATCTGTTCTATTCGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGGCTGCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCATACAAACAAGTCAAAATCGGCAATCCTCTTGAGAAAGGGACATTGTTAGGACCATTACATACTCCTGAATCAAAAAAGAACTTTGAGAAAGGAATTGAAGTCATCAAATCCCAGGGTGGTAAAATACTAACGGGAGGTAAAGCAGTCGAAGGTGAAGGAAACTTTGTGGAGCCTACGATAATCGAGATATCAGCAGATGCTGCTGTCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAGTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGCAGCTCGATATTCACTCGGAACCCTGAAAACATCTTCAGGTGGATCGGACCACTGGGAAGTGACTGTGGCATTGTGAATGTGAACATACCGACGAATGGAGCTGAGATTGGTGGAGCTTTTGGAGGCGAGAAAGCGACTGGTGGTGGTCGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTGTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGAATTAACTTCGGTTAG

Protein Analysis

508

Amino Acids

54.21

Weight (kDa)

5.45

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 36 - 489 2.8e-133 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 644
AciI CCGC 2 cut(s) 851, 875
AclI AACGTT 1 cut(s) 895
AclWI GGATC 5 cut(s) 73, 270, 319, 415, 1325
AcoI YGGCCR 1 cut(s) 657
AcuI CTGAAG 4 cut(s) 354, 405, 636, 1294
AfaI GTAC 5 cut(s) 23, 756, 948, 1454, 1474
AfiI CCNNNNNNNGG 2 cut(s) 239, 1370
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 4 cut(s) 111, 187, 314, 1067
AjnI CCWGG 2 cut(s) 737, 1080
Alw21I GWGCWC 1 cut(s) 571
AlwI GGATC 5 cut(s) 73, 270, 319, 415, 1325
AlwNI CAGNNNCTG 1 cut(s) 1169
Ama87I CYCGRG 1 cut(s) 950
AoxI GGCC 1 cut(s) 657
ApeKI GCWGC 5 cut(s) 203, 872, 916, 1169, 1275
AspLEI GCGC 1 cut(s) 1507
AspS9I GGNCC 3 cut(s) 98, 1019, 1322
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 3 cut(s) 254, 695, 1133
AvaI CYCGRG 1 cut(s) 950
AvaII GGWCC 3 cut(s) 98, 1019, 1322
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 5 cut(s) 215, 859, 903, 1156, 1287
BccI CCATC 1 cut(s) 1484
BceAI ACGGC 3 cut(s) 243, 672, 894
BciT130I CCWGG 2 cut(s) 739, 1082
BciVI GTATCC 1 cut(s) 730
BcnI CCSGG 1 cut(s) 642
BfaI CTAG 3 cut(s) 164, 608, 1502
BfuAI ACCTGC 1 cut(s) 211
BfuI GTATCC 1 cut(s) 730
BglII AGATCT 1 cut(s) 776
BisI GCNGC 6 cut(s) 204, 852, 873, 917, 1170, 1276
BlsI GCNGC 6 cut(s) 205, 853, 874, 918, 1171, 1277
BmcAI AGTACT 1 cut(s) 948
Bme1390I CCNGG 3 cut(s) 642, 739, 1082
Bme18I GGWCC 3 cut(s) 98, 1019, 1322
BmeT110I CYCGRG 1 cut(s) 950
BmgT120I GGNCC 3 cut(s) 98, 1019, 1322
BmiI GGNNCC 5 cut(s) 231, 646, 1140, 1260, 1295
BmrFI CCNGG 3 cut(s) 642, 739, 1082
BmrI ACTGGG 1 cut(s) 1337
BmsI GCATC 4 cut(s) 207, 256, 823, 1156
BmuI ACTGGG 1 cut(s) 1337
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 721
BpuEI CTTGAG 4 cut(s) 129, 815, 1019, 1248
BpuMI CCSGG 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 738, 1080, 1081
BsaWI WCCGGW 1 cut(s) 1198
BsaXI ACNNNNNCTCC 2 cut(s) 1224, 1254
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 1370
Bse1I ACTGG 3 cut(s) 733, 1332, 1417
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 2 cut(s) 739, 1082
BseDI CCNNGG 3 cut(s) 738, 1080, 1081
BseGI GGATG 2 cut(s) 222, 271
BseLI CCNNNNNNNGG 2 cut(s) 239, 1370
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 2 cut(s) 23, 1368
BseNI ACTGG 3 cut(s) 733, 1332, 1417
BseXI GCAGC 5 cut(s) 215, 859, 903, 1156, 1287
BsgI GTGCAG 1 cut(s) 525
Bsh1285I CGRYCG 1 cut(s) 1466
BshFI GGCC 1 cut(s) 659
BshNI GGYRCC 1 cut(s) 644
BsiEI CGRYCG 1 cut(s) 1466
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 950
BsiSI CCGG 2 cut(s) 642, 1199
BslFI GGGAC 1 cut(s) 1021
BslI CCNNNNNNNGG 2 cut(s) 239, 1370
BsmFI GGGAC 1 cut(s) 1021
BsmI GAATGC 3 cut(s) 526, 708, 775
BsnI GGCC 1 cut(s) 659
BsoBI CYCGRG 1 cut(s) 950
Bsp1286I GDGCHC 2 cut(s) 571, 749
Bsp143I GATC 8 cut(s) 65, 275, 324, 407, 776, 857, 1317, 1463
BspACI CCGC 2 cut(s) 851, 875
BspANI GGCC 1 cut(s) 659
BspCNI CTCAG 2 cut(s) 24, 1369
BspLI GGNNCC 5 cut(s) 231, 646, 1140, 1260, 1295
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 5 cut(s) 73, 270, 319, 415, 1325
BspQI GCTCTTC 1 cut(s) 1179
BspT107I GGYRCC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 3 cut(s) 733, 1332, 1417
BssECI CCNNGG 3 cut(s) 738, 1080, 1081
BssMI GATC 8 cut(s) 65, 275, 324, 407, 776, 857, 1317, 1463
Bst2UI CCWGG 2 cut(s) 739, 1082
Bst4CI ACNGT 6 cut(s) 551, 582, 766, 846, 1340, 1452
Bst6I CTCTTC 1 cut(s) 1179
BstAPI GCANNNNNTGC 2 cut(s) 906, 1169
BstC8I GCNNGC 3 cut(s) 79, 90, 193
BstDEI CTNAG 6 cut(s) 32, 234, 272, 715, 1271, 1377
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 222, 271
BstHHI GCGC 1 cut(s) 1507
BstKTI GATC 8 cut(s) 68, 278, 327, 410, 779, 860, 1320, 1466
BstMBI GATC 8 cut(s) 65, 275, 324, 407, 776, 857, 1317, 1463
BstMCI CGRYCG 1 cut(s) 1466
BstMWI GCNNNNNNNGC 4 cut(s) 530, 906, 922, 1169
BstNI CCWGG 2 cut(s) 739, 1082
BstNSI RCATGY 2 cut(s) 370, 1459
BstSCI CCNGG 3 cut(s) 640, 737, 1080
BstV1I GCAGC 5 cut(s) 215, 859, 903, 1156, 1287
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 4 cut(s) 65, 275, 324, 776
BstYI RGATCY 4 cut(s) 65, 275, 324, 776
BsuI GTATCC 1 cut(s) 730
BsuRI GGCC 1 cut(s) 659
BtsCI GGATG 2 cut(s) 222, 271
BtsIMutI CAGTG 2 cut(s) 771, 1325
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 79, 90, 193
CaiI CAGNNNCTG 1 cut(s) 1169
CfoI GCGC 1 cut(s) 1507
Cfr13I GGNCC 3 cut(s) 98, 1019, 1322
CseI GACGC 1 cut(s) 1448
Csp6I GTAC 5 cut(s) 22, 755, 947, 1453, 1473
CviAII CATG 7 cut(s) 367, 439, 661, 826, 926, 1443, 1456
CviQI GTAC 5 cut(s) 22, 755, 947, 1453, 1473
DdeI CTNAG 6 cut(s) 32, 234, 272, 715, 1271, 1377
DpnI GATC 8 cut(s) 67, 277, 326, 409, 778, 859, 1319, 1465
DpnII GATC 8 cut(s) 65, 275, 324, 407, 776, 857, 1317, 1463
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 1179
EarI CTCTTC 1 cut(s) 1179
Eco24I GRGCYC 1 cut(s) 749
Eco32I GATATC 2 cut(s) 247, 1158
Eco47I GGWCC 3 cut(s) 98, 1019, 1322
Eco57I CTGAAG 4 cut(s) 354, 405, 636, 1294
Eco88I CYCGRG 1 cut(s) 950
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 737, 1080
EcoRV GATATC 2 cut(s) 247, 1158
EcoT38I GRGCYC 1 cut(s) 749
FaeI CATG 7 cut(s) 370, 442, 664, 829, 929, 1446, 1459
FaqI GGGAC 1 cut(s) 1021
FatI CATG 7 cut(s) 366, 438, 660, 825, 925, 1442, 1455
Fnu4HI GCNGC 6 cut(s) 204, 852, 873, 917, 1170, 1276
FokI GGATG 2 cut(s) 229, 278
FriOI GRGCYC 1 cut(s) 749
Fsp4HI GCNGC 6 cut(s) 204, 852, 873, 917, 1170, 1276
FspBI CTAG 3 cut(s) 164, 608, 1502
GlaI GCGC 1 cut(s) 1506
GluI GCNGC 6 cut(s) 204, 852, 873, 917, 1170, 1276
GsuI CTGGAG 1 cut(s) 721
HaeIII GGCC 1 cut(s) 659
HapII CCGG 2 cut(s) 642, 1199
HgaI GACGC 1 cut(s) 1448
HhaI GCGC 1 cut(s) 1507
Hin1II CATG 7 cut(s) 370, 442, 664, 829, 929, 1446, 1459
Hin6I GCGC 1 cut(s) 1505
HinP1I GCGC 1 cut(s) 1505
HincII GTYRAC 1 cut(s) 893
HindII GTYRAC 1 cut(s) 893
HindIII AAGCTT 2 cut(s) 156, 189
HinfI GANTC 3 cut(s) 457, 1037, 1439
HpaII CCGG 2 cut(s) 642, 1199
HphI GGTGA 3 cut(s) 254, 695, 1133
Hpy166II GTNNAC 2 cut(s) 893, 1357
Hpy188I TCNGA 5 cut(s) 33, 254, 424, 1293, 1322
Hpy188III TCNNGA 8 cut(s) 164, 311, 353, 559, 998, 1034, 1153, 1424
Hpy8I GTNNAC 2 cut(s) 893, 1357
Hpy99I CGWCG 2 cut(s) 1369, 1464
HpyAV CCTTC 4 cut(s) 329, 429, 1112, 1118
HpyCH4III ACNGT 6 cut(s) 551, 582, 766, 846, 1340, 1452
HpyCH4IV ACGT 2 cut(s) 72, 895
HpyCH4V TGCA 6 cut(s) 220, 269, 506, 815, 900, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 906, 922, 1169
HpyF3I CTNAG 6 cut(s) 32, 234, 272, 715, 1271, 1377
HpySE526I ACGT 2 cut(s) 72, 895
Hsp92II CATG 7 cut(s) 370, 442, 664, 829, 929, 1446, 1459
HspAI GCGC 1 cut(s) 1505
Kzo9I GATC 8 cut(s) 65, 275, 324, 407, 776, 857, 1317, 1463
LguI GCTCTTC 1 cut(s) 1179
LmnI GCTCC 7 cut(s) 235, 574, 740, 1138, 1201, 1373, 1388
Lsp1109I GCAGC 5 cut(s) 215, 859, 903, 1156, 1287
LweI GCATC 4 cut(s) 207, 256, 823, 1156
MaeI CTAG 3 cut(s) 164, 608, 1502
MaeII ACGT 2 cut(s) 72, 895
MaeIII GTNAC 3 cut(s) 223, 1334, 1494
MalI GATC 8 cut(s) 67, 277, 326, 409, 778, 859, 1319, 1465
MboI GATC 8 cut(s) 65, 275, 324, 407, 776, 857, 1317, 1463
MboII GAAGA 3 cut(s) 293, 1196, 1300
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 4 cut(s) 65, 275, 324, 776
MhlI GDGCHC 2 cut(s) 571, 749
MluCI AATT 6 cut(s) 138, 360, 493, 678, 1062, 1512
MlyI GAGTC 1 cut(s) 1433
MmeI TCCRAC 4 cut(s) 426, 497, 596, 859
MseI TTAA 4 cut(s) 492, 584, 1221, 1515
MslI CAYNNNNRTG 2 cut(s) 824, 930
MspI CCGG 2 cut(s) 642, 1199
MspR9I CCNGG 3 cut(s) 642, 739, 1082
MunI CAATTG 1 cut(s) 138
Mva1269I GAATGC 3 cut(s) 526, 708, 775
MvaI CCWGG 2 cut(s) 739, 1082
MwoI GCNNNNNNNGC 4 cut(s) 530, 906, 922, 1169
NciI CCSGG 1 cut(s) 642
NdeII GATC 8 cut(s) 65, 275, 324, 407, 776, 857, 1317, 1463
NlaIII CATG 7 cut(s) 370, 442, 664, 829, 929, 1446, 1459
NlaIV GGNNCC 5 cut(s) 231, 646, 1140, 1260, 1295
NmuCI GTSAC 1 cut(s) 1334
NspI RCATGY 2 cut(s) 370, 1459
PaeR7I CTCGAG 1 cut(s) 950
PasI CCCWGGG 1 cut(s) 1081
PciI ACATGT 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 1179
PctI GAATGC 3 cut(s) 526, 708, 775
PfeI GAWTC 2 cut(s) 457, 1037
PkrI GCNGC 6 cut(s) 205, 853, 874, 918, 1171, 1277
Ple19I CGATCG 1 cut(s) 1466
PleI GAGTC 1 cut(s) 1433
PpsI GAGTC 1 cut(s) 1433
PscI ACATGT 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 895
Psp6I CCWGG 2 cut(s) 737, 1080
PspGI CCWGG 2 cut(s) 737, 1080
PspN4I GGNNCC 5 cut(s) 231, 646, 1140, 1260, 1295
PspPI GGNCC 3 cut(s) 98, 1019, 1322
PspXI VCTCGAGB 1 cut(s) 950
PsrI GAACNNNNNNTAC 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 1169
PsuI RGATCY 4 cut(s) 65, 275, 324, 776
PvuI CGATCG 1 cut(s) 1466
RsaI GTAC 5 cut(s) 23, 756, 948, 1454, 1474
RsaNI GTAC 5 cut(s) 22, 755, 947, 1453, 1473
RseI CAYNNNNRTG 2 cut(s) 824, 930
SapI GCTCTTC 1 cut(s) 1179
SaqAI TTAA 4 cut(s) 492, 584, 1221, 1515
SatI GCNGC 6 cut(s) 204, 852, 873, 917, 1170, 1276
Sau3AI GATC 8 cut(s) 65, 275, 324, 407, 776, 857, 1317, 1463
Sau96I GGNCC 3 cut(s) 98, 1019, 1322
ScaI AGTACT 1 cut(s) 948
SchI GAGTC 1 cut(s) 1433
ScrFI CCNGG 3 cut(s) 642, 739, 1082
SduI GDGCHC 2 cut(s) 571, 749
SfaNI GCATC 4 cut(s) 207, 256, 823, 1156
Sfr274I CTCGAG 1 cut(s) 950
SinI GGWCC 3 cut(s) 98, 1019, 1322
SlaI CTCGAG 1 cut(s) 950
SmiMI CAYNNNNRTG 2 cut(s) 824, 930
SmlI CTYRAG 5 cut(s) 144, 794, 950, 998, 1263
SmoI CTYRAG 5 cut(s) 144, 794, 950, 998, 1263
Sse9I AATT 6 cut(s) 138, 360, 493, 678, 1062, 1512
SsiI CCGC 2 cut(s) 851, 875
SspMI CTAG 3 cut(s) 164, 608, 1502
StyD4I CCNGG 3 cut(s) 640, 737, 1080
TaaI ACNGT 6 cut(s) 551, 582, 766, 846, 1340, 1452
TaiI ACGT 2 cut(s) 75, 898
TaqI TCGA 7 cut(s) 856, 951, 1116, 1152, 1280, 1462, 1466
TasI AATT 6 cut(s) 138, 360, 493, 678, 1062, 1512
TatI WGTACW 2 cut(s) 946, 1452
TauI GCSGC 1 cut(s) 854
TfiI GAWTC 2 cut(s) 457, 1037
Tru1I TTAA 4 cut(s) 492, 584, 1221, 1515
Tru9I TTAA 4 cut(s) 492, 584, 1221, 1515
TscAI CASTG 2 cut(s) 771, 1332
TseFI GTSAC 1 cut(s) 1334
TseI GCWGC 5 cut(s) 203, 872, 916, 1169, 1275
Tsp45I GTSAC 1 cut(s) 1334
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 771, 1332
VpaK11BI GGWCC 3 cut(s) 98, 1019, 1322
XagI CCTNNNNNAGG 1 cut(s) 237
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 370, 1459
XhoI CTCGAG 1 cut(s) 950
XspI CTAG 3 cut(s) 164, 608, 1502
ZrmI AGTACT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.