Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006153

Physical Location & Seq

Genomic Coordinates Forward (+)

5219023 .. 5221714

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAGCGCGATCGGTCTGGCTCCCGAGAATCCTGGAGGATTCATCAATGGCAACTGGAAGGCAAGCGGCCCGGTTATCTCCACTGTCACCCCTTCCAACAATCAGGAAATTGCAAAAGTCACGGAAGTGTCGATGGAAGATTATGAGGAGGGCCTGCGCAGCTGCAATGAGGCAGTCAAGACATGGAAGACTCTTCCGGCACCGAAGAGAGGTGAGATTGTTAGGCAGATAGGCGACGCACTGAGAGAGAAATTGCAGCATCTTGGGAAGCTTGTGTCCCTCGAGATGGGAAAAATACTTGCTGAAGGAATTGGAGAAGTGCAGGAAGTGATTGATATGTGTGATTACGCTGTTGGACTGAGCCGACAATTGAATGGATCTATCATACCTTCTGAACGTCCGGATCATATGATGTTTGAGGTCTGGAATCCATTGGGAATAGTTGGTGTCATCACTGCTTTCAATTTCCCATGCGCTGTTCTTGGATGGAATGCCTGCATTGCGTTAGTCTGCGGTAACTGCGTTGTCTGGAAGGGCGCACCAACAACTCCTCTGGTGACTATTGCTGTGACAAAGCTAATCGCCGAGGTTCTTAAGAGAAATAACCTACCTGGTGCTATATTCACCGCTTTTTGTGGAGGAGCAGAAATTGGTGAAGCAATAGCAAAAGACACACGGATACCCCTGGTTTCGTTCACTGGAAGTTCAAAGGTAGGTTCGAAGGTGCAACAAATTGTCACTGAGAGATTCGGTAGATGCTTACTTGAATTAAGTGGAAACAATGCCTTAATTGTTATGGATGATGCCGATGTTGGGCTGGCAGTGCGTTCTATCTTTTTTGCAGCTGTTGGTACTGCTGGTCAGCGCTGCACAACTTGTCGTAGATTGTATCTTCATGAAAGCATATACCAAAATTTATTAGATCAACTAGTTGGACTTTACAAGCAAGTCAAAATTGTGCGATCCTTTAGAGAAGGGAACTCTAGTCGGTCCAGGTGGAAAGATCCTTACAGGCGGATCGGTTATAGAGTCAGATGGCAATTTTGTTCAACCAACAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0033993 GO:0042221 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00260 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00260 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

355

Amino Acids

38.73

Weight (kDa)

8.68

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54100 AT1G54100
fragaria_vesca	FvH4_1g08890 FvH4_1g08890 FvH4_1g08890 FvH4_1g08890
malus_domestica	MD02G1094300.v1.1 MD15G1219200.v1.1
prunus_persica	Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1
pyrus_communis	pycom02g07450 pycom02g07460 pycom15g19430 pycom15g19450
rosa_chinensis	RchiOBHm_Chr2g0095351
rosa_laevigata	RLG00000016557
rosa_multiflora	Rmu_sc0024400.1_g000001 Rmu_sc0041866.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146450
rosa_rugosa	Rorug02G0049900
rosa_samantha	Rh2AG098100 Rh2BG099300 Rh2CG101300 Rh2DG098900
rosa_wichuraiana	Rw2G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	199
AccII	CGCG	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	4 cut(s)	66, 513, 627, 1015
AclWI	GGATC	5 cut(s)	385, 411, 957, 998, 1025
AcsI	RAATTY	1 cut(s)	913
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	853
AfeI	AGCGCT	1 cut(s)	866
AfiI	CCNNNNNNNGG	3 cut(s)	209, 286, 813
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	373, 463, 708, 767, 1050
AhlI	ACTAGT	1 cut(s)	928
AjnI	CCWGG	4 cut(s)	31, 610, 684, 992
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	4 cut(s)	162, 271, 577, 845
AluI	AGCT	4 cut(s)	162, 271, 577, 845
AlwI	GGATC	5 cut(s)	385, 411, 957, 998, 1025
Ama87I	CYCGRG	2 cut(s)	23, 281
Aor13HI	TCCGGA	1 cut(s)	400
Aor51HI	AGCGCT	1 cut(s)	866
AoxI	GGCC	2 cut(s)	67, 151
ApeKI	GCWGC	5 cut(s)	159, 162, 256, 842, 867
ApoI	RAATTY	1 cut(s)	913
AspLEI	GCGC	5 cut(s)	8, 159, 476, 539, 867
AspS9I	GGNCC	3 cut(s)	68, 151, 990
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	5 cut(s)	79, 224, 568, 616, 665
AsuII	TTCGAA	1 cut(s)	719
AvaI	CYCGRG	2 cut(s)	23, 281
AvaII	GGWCC	1 cut(s)	990
BanI	GGYRCC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	5 cut(s)	149, 171, 268, 854, 854
BccI	CCATC	4 cut(s)	127, 280, 480, 1029
BciT130I	CCWGG	4 cut(s)	33, 612, 686, 994
BciVI	GTATCC	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	71
BcuI	ACTAGT	1 cut(s)	928
BfaI	CTAG	2 cut(s)	929, 984
BfoI	RGCGCY	1 cut(s)	868
BfrI	CTTAAG	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	672
BisI	GCNGC	6 cut(s)	67, 160, 163, 257, 843, 868
BlsI	GCNGC	6 cut(s)	68, 161, 164, 258, 844, 869
Bme1390I	CCNGG	5 cut(s)	33, 71, 612, 686, 994
Bme18I	GGWCC	1 cut(s)	990
BmeT110I	CYCGRG	2 cut(s)	23, 281
BmgT120I	GGNCC	3 cut(s)	68, 151, 990
BmiI	GGNNCC	2 cut(s)	21, 201
BmrFI	CCNGG	5 cut(s)	33, 71, 612, 686, 994
BmsI	GCATC	3 cut(s)	268, 746, 793
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	585, 684
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 286, 813
Bse1I	ACTGG	2 cut(s)	59, 703
Bse3DI	GCAATG	2 cut(s)	172, 498
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	4 cut(s)	33, 612, 686, 994
BseDI	CCNNGG	2 cut(s)	585, 684
BseGI	GGATG	2 cut(s)	491, 805
BseLI	CCNNNNNNNGG	3 cut(s)	209, 286, 813
BseMI	GCAATG	2 cut(s)	172, 498
BseMII	CTCAG	3 cut(s)	233, 350, 732
BseNI	ACTGG	2 cut(s)	59, 703
BseRI	GAGGAG	3 cut(s)	161, 540, 654
BseXI	GCAGC	5 cut(s)	149, 171, 268, 854, 854
BsgI	GTGCAG	2 cut(s)	341, 853
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	69, 153
BshNI	GGYRCC	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	12
BsiHKCI	CYCGRG	2 cut(s)	23, 281
BsiSI	CCGG	3 cut(s)	71, 197, 401
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	209, 286, 813
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	69, 153
BsoBI	CYCGRG	2 cut(s)	23, 281
Bsp119I	TTCGAA	1 cut(s)	719
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	7 cut(s)	9, 377, 403, 922, 962, 1003, 1017
BspACI	CCGC	4 cut(s)	66, 513, 627, 1015
BspANI	GGCC	2 cut(s)	69, 153
BspCNI	CTCAG	3 cut(s)	234, 351, 733
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	2 cut(s)	21, 201
BspPI	GGATC	5 cut(s)	385, 411, 957, 998, 1025
BspT104I	TTCGAA	1 cut(s)	719
BspT107I	GGYRCC	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	2 cut(s)	172, 498
BsrI	ACTGG	2 cut(s)	59, 703
BssECI	CCNNGG	2 cut(s)	585, 684
BssMI	GATC	7 cut(s)	9, 377, 403, 922, 962, 1003, 1017
Bst2UI	CCWGG	4 cut(s)	33, 612, 686, 994
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	198, 200
BstAFI	CTTAAG	1 cut(s)	593
BstBI	TTCGAA	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	64, 155, 496, 819
BstDEI	CTNAG	3 cut(s)	242, 359, 741
BstF5I	GGATG	2 cut(s)	491, 805
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	868
BstHHI	GCGC	5 cut(s)	8, 159, 476, 539, 867
BstKTI	GATC	7 cut(s)	12, 380, 406, 925, 965, 1006, 1020
BstMBI	GATC	7 cut(s)	9, 377, 403, 922, 962, 1003, 1017
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 500, 519, 823
BstNI	CCWGG	4 cut(s)	33, 612, 686, 994
BstSCI	CCNGG	5 cut(s)	31, 69, 610, 684, 992
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	149, 171, 268, 854, 854
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	377, 1003
BstYI	RGATCY	2 cut(s)	377, 1003
BsuI	GTATCC	1 cut(s)	672
BsuRI	GGCC	2 cut(s)	69, 153
BtsCI	GGATG	2 cut(s)	491, 805
BtsI	GCAGTG	2 cut(s)	453, 828
BtsIMutI	CAGTG	6 cut(s)	81, 239, 453, 696, 738, 828
Cac8I	GCNNGC	4 cut(s)	64, 155, 496, 819
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	5 cut(s)	8, 159, 476, 539, 867
Cfr13I	GGNCC	3 cut(s)	68, 151, 990
CseI	GACGC	1 cut(s)	245
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	852
CviAII	CATG	3 cut(s)	183, 471, 896
CviJI	RGCY	9 cut(s)	20, 69, 153, 162, 271, 363, 577, 817, 845
CviKI_1	RGCY	9 cut(s)	20, 69, 153, 162, 271, 363, 577, 817, 845
CviQI	GTAC	1 cut(s)	852
DdeI	CTNAG	3 cut(s)	242, 359, 741
DpnI	GATC	7 cut(s)	11, 379, 405, 924, 964, 1005, 1019
DpnII	GATC	7 cut(s)	9, 377, 403, 922, 962, 1003, 1017
Eam1104I	CTCTTC	2 cut(s)	198, 200
EarI	CTCTTC	2 cut(s)	198, 200
EciI	GGCGGA	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	990
Eco47III	AGCGCT	1 cut(s)	866
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	23, 281
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	4 cut(s)	31, 610, 684, 992
FaeI	CATG	3 cut(s)	186, 474, 899
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	3 cut(s)	182, 470, 895
FauNDI	CATATG	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	67, 160, 163, 257, 843, 868
FokI	GGATG	2 cut(s)	498, 812
Fsp4HI	GCNGC	6 cut(s)	67, 160, 163, 257, 843, 868
FspBI	CTAG	2 cut(s)	929, 984
FspI	TGCGCA	1 cut(s)	158
GlaI	GCGC	5 cut(s)	7, 158, 475, 538, 866
GluI	GCNGC	6 cut(s)	67, 160, 163, 257, 843, 868
GsuI	CTGGAG	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	868
HaeIII	GGCC	2 cut(s)	69, 153
HapII	CCGG	3 cut(s)	71, 197, 401
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	5 cut(s)	8, 159, 476, 539, 867
Hin1II	CATG	3 cut(s)	186, 474, 899
Hin6I	GCGC	5 cut(s)	6, 157, 474, 537, 865
HinP1I	GCGC	5 cut(s)	6, 157, 474, 537, 865
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	6 cut(s)	28, 39, 190, 427, 747, 1029
HpaII	CCGG	3 cut(s)	71, 197, 401
HphI	GGTGA	5 cut(s)	79, 224, 568, 616, 665
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	2 cut(s)	394, 1034
Hpy188III	TCNNGA	8 cut(s)	23, 104, 178, 283, 401, 424, 529, 896
Hpy8I	GTNNAC	1 cut(s)	696
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	7 cut(s)	52, 102, 299, 399, 526, 715, 968
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	8 cut(s)	113, 165, 256, 322, 498, 727, 842, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 500, 519, 823
HpyF3I	CTNAG	3 cut(s)	242, 359, 741
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	3 cut(s)	186, 474, 899
HspAI	GCGC	5 cut(s)	6, 157, 474, 537, 865
Kpn2I	TCCGGA	1 cut(s)	400
Kzo9I	GATC	7 cut(s)	9, 377, 403, 922, 962, 1003, 1017
LmnI	GCTCC	2 cut(s)	25, 641
Lsp1109I	GCAGC	5 cut(s)	149, 171, 268, 854, 854
LweI	GCATC	3 cut(s)	268, 746, 793
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	2 cut(s)	929, 984
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	6 cut(s)	85, 118, 515, 556, 568, 736
MalI	GATC	7 cut(s)	11, 379, 405, 924, 964, 1005, 1019
MboI	GATC	7 cut(s)	9, 377, 403, 922, 962, 1003, 1017
MboII	GAAGA	5 cut(s)	149, 185, 199, 217, 884
MfeI	CAATTG	2 cut(s)	368, 1057
MflI	RGATCY	2 cut(s)	377, 1003
MlyI	GAGTC	2 cut(s)	184, 1038
MmeI	TCCRAC	3 cut(s)	120, 334, 913
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	3 cut(s)	594, 770, 788
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	162, 845
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	3 cut(s)	71, 197, 401
MspR9I	CCNGG	5 cut(s)	33, 71, 612, 686, 994
MunI	CAATTG	2 cut(s)	368, 1057
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	4 cut(s)	33, 612, 686, 994
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	159, 500, 519, 823
NciI	CCSGG	1 cut(s)	71
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	7 cut(s)	9, 377, 403, 922, 962, 1003, 1017
NlaIII	CATG	3 cut(s)	186, 474, 899
NlaIV	GGNNCC	2 cut(s)	21, 201
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	5 cut(s)	85, 118, 556, 568, 736
NsbI	TGCGCA	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	719
OliI	CACNNNNGTG	1 cut(s)	125
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	4 cut(s)	28, 39, 427, 747
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	6 cut(s)	68, 161, 164, 258, 844, 869
Ple19I	CGATCG	1 cut(s)	12
PleI	GAGTC	2 cut(s)	184, 1037
PpsI	GAGTC	2 cut(s)	184, 1037
Psp6I	CCWGG	4 cut(s)	31, 610, 684, 992
PspGI	CCWGG	4 cut(s)	31, 610, 684, 992
PspN4I	GGNNCC	2 cut(s)	21, 201
PspPI	GGNCC	3 cut(s)	68, 151, 990
PsuI	RGATCY	2 cut(s)	377, 1003
PvuI	CGATCG	1 cut(s)	12
PvuII	CAGCTG	2 cut(s)	162, 845
RsaI	GTAC	1 cut(s)	853
RsaNI	GTAC	1 cut(s)	852
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	594, 770, 788
SatI	GCNGC	6 cut(s)	67, 160, 163, 257, 843, 868
Sau3AI	GATC	7 cut(s)	9, 377, 403, 922, 962, 1003, 1017
Sau96I	GGNCC	3 cut(s)	68, 151, 990
SchI	GAGTC	2 cut(s)	184, 1038
ScrFI	CCNGG	5 cut(s)	33, 71, 612, 686, 994
SexAI	ACCWGGT	1 cut(s)	610
SfaNI	GCATC	3 cut(s)	268, 746, 793
Sfr274I	CTCGAG	1 cut(s)	281
SfuI	TTCGAA	1 cut(s)	719
SinI	GGWCC	1 cut(s)	990
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	281, 593
SmoI	CTYRAG	2 cut(s)	281, 593
SpeI	ACTAGT	1 cut(s)	928
SsiI	CCGC	4 cut(s)	66, 513, 627, 1015
SspMI	CTAG	2 cut(s)	929, 984
StyD4I	CCNGG	5 cut(s)	31, 69, 610, 684, 992
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	3 cut(s)	131, 282, 719
TaqII	GACCGA	1 cut(s)	978
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	4 cut(s)	28, 39, 427, 747
Tru1I	TTAA	3 cut(s)	594, 770, 788
Tru9I	TTAA	3 cut(s)	594, 770, 788
TscAI	CASTG	6 cut(s)	88, 246, 460, 703, 745, 828
TseFI	GTSAC	5 cut(s)	85, 118, 556, 568, 736
TseI	GCWGC	5 cut(s)	159, 162, 256, 842, 867
Tsp45I	GTSAC	5 cut(s)	85, 118, 556, 568, 736
TspDTI	ATGAA	3 cut(s)	31, 884, 912
TspGWI	ACGGA	2 cut(s)	137, 691
TspRI	CASTG	6 cut(s)	88, 246, 460, 703, 745, 828
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	990
XapI	RAATTY	1 cut(s)	913
XhoI	CTCGAG	1 cut(s)	281
XspI	CTAG	2 cut(s)	929, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.