Rh2CG101300

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006153
Physical Location & Seq
Forward (+)
8772413 .. 8777747
5335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG101300.1

Sequence Viewer

Length: 1212 bp
ATGGGGAAAATACTTGCTGAAGGAATTGGGGAAGTTCAGGAAGTTATCGATATGTGTGATTTTTGTGTGGGATTGAGCCGTCAACTGAATGGATCTATCATACCCTCAGAACGTCCAAATCACATGATGTTTGAGGTTTGGAATCCATTGGGAATAGTTGGTGTCATCACTGCTTTCAATTTCCCATGTGCTGTTCTTGGATGGAATGCCTGCGTTGCGCTTGTCTGTGGTAACTGTGTTGTCTGGAAGGGTGCACCAACAACTCCATTGGTAACTATTGCTGTGACAAAGCTAATTGCCGAGGTTCTTGAGAAAAATAACTTGCCCGGGGCTATATTCACCGCTTTCTGTGGTGGAGCTGAAGTTGGTGAAGCATTAGCAAAAGACAACAGAATACCCCTGGTTTCATTCACTGGAAGTTCAAAGGTGGGTCAGAAGGTTCAACGAATTGTCAGTGAGAGGTTTGGTAAATGCTTACTTGAATTAAGTGGGAACAACGCCATAATTGTTATGGATGATGCTGACATCGAGCTGGCAGTGCGTTCTATATTGTTCGCAGCCGTTGGTACTGCTGGTCAGCGCTGCACAACATGCCGTAGATTGTATCTTCATGAAACTATATATCAGAATGTATTAGATAAACTAGTCGGACTTTACAAGCAAGTCAAGATTGGGAACCCTTTGGAGAAAGGAACTCTAGTTGGGCCACTACATACTCACCAGTCGAAGGAGAATTTTGAGAAGGGGATTGGGGCCATTAAATCTCAGGGGGGAAAGATTGCTGTAGGTGGATCGACTGTAGGTTCAGATGGCAATTATGTGCAGCCAACAATTGTTGAGATTTCTCCAACTGCAGCTGTGGTGAAAGAAGAGTTGTTTGGTCCAGTTCTGTATGTTATGAAATTCAAGAGTCTTGATGAAGCAATAGAATTGAACAACTCCGTACCACAAGGATTAAGTAGCTCAATCTTCACAAGAAAACCAGAAATTCTCTTTAAATGGATTGGGCCACAGGGCAGTGATTGTGGTATAGTGAATGTAAACATTCCTACTAATGGCGCTGAGATTGGCGGTGCCTTTGGTGGAGAGAAGGCAACTGGTGGTGGCCGAGAAGCAGGGAGCGACTCTTGGAAGCAATACATGAGACGCTCAACATGTACAATCAATTATGGGAGCGAACTACCACTTGCTCAGGGTATCAATTTCGGCTAG

Protein Analysis

403

Amino Acids

42.9

Weight (kDa)

6.47

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 1 - 384 9e-115 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1073
AciI CCGC 2 cut(s) 342, 1071
AclWI GGATC 2 cut(s) 100, 799
AcoI YGGCCR 1 cut(s) 1105
AcsI RAATTY 3 cut(s) 733, 902, 987
AcuI CTGAAG 2 cut(s) 39, 381
AfaI GTAC 3 cut(s) 568, 945, 1159
AfeI AGCGCT 1 cut(s) 581
AfiI CCNNNNNNNGG 2 cut(s) 727, 1055
AflIII ACRYGT 1 cut(s) 1154
AgsI TTSAA 6 cut(s) 178, 423, 443, 482, 907, 934
AhlI ACTAGT 1 cut(s) 643
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 861, 893
AluBI AGCT 5 cut(s) 292, 359, 532, 857, 963
AluI AGCT 5 cut(s) 292, 359, 532, 857, 963
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 1138
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 2 cut(s) 100, 799
Ama87I CYCGRG 1 cut(s) 326
Aor51HI AGCGCT 1 cut(s) 581
AoxI GGCC 4 cut(s) 704, 753, 1007, 1105
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 4 cut(s) 557, 582, 823, 854
ApoI RAATTY 3 cut(s) 733, 902, 987
AspLEI GCGC 3 cut(s) 220, 582, 1061
AspS9I GGNCC 4 cut(s) 704, 753, 881, 1007
AsuC2I CCSGG 2 cut(s) 327, 328
AsuHPI GGTGA 4 cut(s) 331, 380, 710, 874
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 881
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 1073
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 4 cut(s) 569, 569, 835, 866
BccI CCATC 2 cut(s) 195, 803
BceAI ACGGC 3 cut(s) 63, 545, 579
BciT130I CCWGG 1 cut(s) 401
BcnI CCSGG 2 cut(s) 327, 328
BcoDI GTCTC 1 cut(s) 1138
BcuI ACTAGT 1 cut(s) 643
BfaI CTAG 3 cut(s) 644, 698, 1210
BfmI CTRYAG 3 cut(s) 783, 798, 852
BfoI RGCGCY 2 cut(s) 583, 1062
BisI GCNGC 4 cut(s) 558, 583, 824, 855
BlsI GCNGC 4 cut(s) 559, 584, 825, 856
Bme1390I CCNGG 3 cut(s) 327, 328, 401
Bme18I GGWCC 1 cut(s) 881
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 4 cut(s) 704, 753, 881, 1007
BmiI GGNNCC 3 cut(s) 677, 754, 1075
BmrFI CCNGG 3 cut(s) 327, 328, 401
BmsI GCATC 1 cut(s) 508
Bpu10I CCTNAGC 1 cut(s) 1191
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 2 cut(s) 327, 328
Bsa29I ATCGAT 1 cut(s) 48
BsaJI CCNNGG 4 cut(s) 300, 326, 327, 399
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 727, 1055
Bse1I ACTGG 4 cut(s) 418, 721, 884, 1102
BseBI CCWGG 1 cut(s) 401
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 4 cut(s) 300, 326, 327, 399
BseGI GGATG 2 cut(s) 206, 520
BseLI CCNNNNNNNGG 2 cut(s) 727, 1055
BseMII CTCAG 4 cut(s) 120, 779, 1053, 1205
BseNI ACTGG 4 cut(s) 418, 721, 884, 1102
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 4 cut(s) 569, 569, 835, 866
BsgI GTGCAG 2 cut(s) 568, 842
BshFI GGCC 4 cut(s) 706, 755, 1009, 1107
BshNI GGYRCC 1 cut(s) 1073
BshVI ATCGAT 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 727, 1055
BsmAI GTCTC 1 cut(s) 1138
BsmBI CGTCTC 1 cut(s) 1138
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 4 cut(s) 706, 755, 1009, 1107
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 1157
Bsp143I GATC 2 cut(s) 92, 791
BspACI CCGC 2 cut(s) 342, 1071
BspANI GGCC 4 cut(s) 706, 755, 1009, 1107
BspCNI CTCAG 4 cut(s) 119, 778, 1054, 1204
BspDI ATCGAT 1 cut(s) 48
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 3 cut(s) 677, 754, 1075
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 2 cut(s) 100, 799
BspT107I GGYRCC 1 cut(s) 1073
BsrGI TGTACA 1 cut(s) 1157
BsrI ACTGG 4 cut(s) 418, 721, 884, 1102
BssECI CCNNGG 4 cut(s) 300, 326, 327, 399
BssMI GATC 2 cut(s) 92, 791
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 236, 799
Bst6I CTCTTC 1 cut(s) 864
BstAPI GCANNNNNTGC 1 cut(s) 591
BstAUI TGTACA 1 cut(s) 1157
BstC8I GCNNGC 2 cut(s) 211, 534
BstDEI CTNAG 4 cut(s) 106, 765, 1062, 1191
BstF5I GGATG 2 cut(s) 206, 520
BstH2I RGCGCY 2 cut(s) 583, 1062
BstHHI GCGC 3 cut(s) 220, 582, 1061
BstKTI GATC 2 cut(s) 95, 794
BstMAI GTCTC 1 cut(s) 1138
BstMBI GATC 2 cut(s) 92, 791
BstMWI GCNNNNNNNGC 3 cut(s) 215, 538, 591
BstNI CCWGG 1 cut(s) 401
BstNSI RCATGY 2 cut(s) 594, 1158
BstSCI CCNGG 3 cut(s) 325, 326, 399
BstSFI CTRYAG 3 cut(s) 783, 798, 852
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 569, 569, 835, 866
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 4 cut(s) 706, 755, 1009, 1107
BsuTUI ATCGAT 1 cut(s) 48
BtsCI GGATG 2 cut(s) 206, 520
BtsI GCAGTG 3 cut(s) 168, 543, 1024
BtsIMutI CAGTG 5 cut(s) 168, 411, 460, 543, 1024
Cac8I GCNNGC 2 cut(s) 211, 534
CciI TCATGA 1 cut(s) 610
CfoI GCGC 3 cut(s) 220, 582, 1061
Cfr13I GGNCC 4 cut(s) 704, 753, 881, 1007
Cfr9I CCCGGG 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 48
CseI GACGC 1 cut(s) 1155
Csp6I GTAC 3 cut(s) 567, 944, 1158
CviAII CATG 6 cut(s) 124, 186, 591, 611, 1141, 1155
CviQI GTAC 3 cut(s) 567, 944, 1158
DdeI CTNAG 4 cut(s) 106, 765, 1062, 1191
DpnI GATC 2 cut(s) 94, 793
DpnII GATC 2 cut(s) 92, 791
DraI TTTAAA 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 1105
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
Eco47I GGWCC 1 cut(s) 881
Eco47III AGCGCT 1 cut(s) 581
Eco57I CTGAAG 2 cut(s) 39, 381
Eco88I CYCGRG 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 399
Esp3I CGTCTC 1 cut(s) 1138
FaeI CATG 6 cut(s) 127, 189, 594, 614, 1144, 1158
FatI CATG 6 cut(s) 123, 185, 590, 610, 1140, 1154
Fnu4HI GCNGC 4 cut(s) 558, 583, 824, 855
FokI GGATG 2 cut(s) 213, 527
Fsp4HI GCNGC 4 cut(s) 558, 583, 824, 855
FspBI CTAG 3 cut(s) 644, 698, 1210
GlaI GCGC 3 cut(s) 219, 581, 1060
GluI GCNGC 4 cut(s) 558, 583, 824, 855
HaeII RGCGCY 2 cut(s) 583, 1062
HaeIII GGCC 4 cut(s) 706, 755, 1009, 1107
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 1155
HhaI GCGC 3 cut(s) 220, 582, 1061
Hin1II CATG 6 cut(s) 127, 189, 594, 614, 1144, 1158
Hin6I GCGC 3 cut(s) 218, 580, 1059
HinP1I GCGC 3 cut(s) 218, 580, 1059
HincII GTYRAC 1 cut(s) 83
HindII GTYRAC 1 cut(s) 83
HinfI GANTC 3 cut(s) 142, 910, 1124
HpaII CCGG 1 cut(s) 327
HphI GGTGA 4 cut(s) 331, 380, 710, 874
Hpy166II GTNNAC 3 cut(s) 83, 254, 1042
Hpy188I TCNGA 5 cut(s) 109, 435, 627, 650, 808
Hpy188III TCNNGA 7 cut(s) 38, 244, 308, 611, 667, 907, 914
Hpy8I GTNNAC 3 cut(s) 83, 254, 1042
HpyAV CCTTC 6 cut(s) 14, 241, 430, 721, 736, 1084
HpyCH4III ACNGT 2 cut(s) 236, 799
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 254, 585, 823, 854
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 538, 591
HpyF3I CTNAG 4 cut(s) 106, 765, 1062, 1191
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 6 cut(s) 127, 189, 594, 614, 1144, 1158
HspAI GCGC 3 cut(s) 218, 580, 1059
Kzo9I GATC 2 cut(s) 92, 791
LmnI GCTCC 3 cut(s) 356, 1119, 1173
Lsp1109I GCAGC 4 cut(s) 569, 569, 835, 866
LweI GCATC 1 cut(s) 508
MaeI CTAG 3 cut(s) 644, 698, 1210
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 3 cut(s) 230, 271, 283
MalI GATC 2 cut(s) 94, 793
MboI GATC 2 cut(s) 92, 791
MboII GAAGA 3 cut(s) 599, 881, 961
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 256
MlyI GAGTC 2 cut(s) 919, 1118
MmeI TCCRAC 2 cut(s) 628, 872
MnlI CCTC 4 cut(s) 115, 127, 295, 453
MseI TTAA 4 cut(s) 485, 759, 956, 996
MspA1I CMGCKG 1 cut(s) 857
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 3 cut(s) 327, 328, 401
MunI CAATTG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 3 cut(s) 215, 538, 591
NciI CCSGG 2 cut(s) 327, 328
NdeII GATC 2 cut(s) 92, 791
NlaIII CATG 6 cut(s) 127, 189, 594, 614, 1144, 1158
NlaIV GGNNCC 3 cut(s) 677, 754, 1075
NmeAIII GCCGAG 2 cut(s) 325, 1133
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 2 cut(s) 594, 1158
PagI TCATGA 1 cut(s) 610
PciI ACATGT 1 cut(s) 1154
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 4 cut(s) 559, 584, 825, 856
PleI GAGTC 2 cut(s) 918, 1118
PpsI GAGTC 2 cut(s) 918, 1118
PscI ACATGT 1 cut(s) 1154
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 3 cut(s) 677, 754, 1075
PspPI GGNCC 4 cut(s) 704, 753, 881, 1007
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 3 cut(s) 568, 945, 1159
RsaNI GTAC 3 cut(s) 567, 944, 1158
SaqAI TTAA 4 cut(s) 485, 759, 956, 996
SatI GCNGC 4 cut(s) 558, 583, 824, 855
Sau3AI GATC 2 cut(s) 92, 791
Sau96I GGNCC 4 cut(s) 704, 753, 881, 1007
SchI GAGTC 2 cut(s) 919, 1118
ScrFI CCNGG 3 cut(s) 327, 328, 401
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 3 cut(s) 783, 798, 852
SinI GGWCC 1 cut(s) 881
SmaI CCCGGG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SpeI ACTAGT 1 cut(s) 643
SsiI CCGC 2 cut(s) 342, 1071
SspMI CTAG 3 cut(s) 644, 698, 1210
StyD4I CCNGG 3 cut(s) 325, 326, 399
TaaI ACNGT 2 cut(s) 236, 799
TaiI ACGT 1 cut(s) 115
TaqI TCGA 4 cut(s) 48, 528, 725, 794
TatI WGTACW 1 cut(s) 1157
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 4 cut(s) 485, 759, 956, 996
Tru9I TTAA 4 cut(s) 485, 759, 956, 996
TscAI CASTG 5 cut(s) 175, 418, 460, 543, 1024
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 4 cut(s) 557, 582, 823, 854
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 5 cut(s) 396, 599, 627, 914, 933
TspGWI ACGGA 1 cut(s) 931
TspMI CCCGGG 1 cut(s) 326
TspRI CASTG 5 cut(s) 175, 418, 460, 543, 1024
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 881
XapI RAATTY 3 cut(s) 733, 902, 987
XceI RCATGY 2 cut(s) 594, 1158
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmaI CCCGGG 1 cut(s) 326
XspI CTAG 3 cut(s) 644, 698, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.