Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024400.1

Orthogroup ID

OG0006153

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2911

Gene Structure 2911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024400.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1009 bp

atgaaacatatgggatggaatgcctgcgttgcgcttgtctgtggtaactgtgttgtctggaagggtgcaccaacaactccattggtaactattgctgtgacaaagctaattgccgaggttcttgagaaaaataacttgcccggggctatattcaccgctttctgtggtggagctgaagttggtgaagcattagcaaaagacaacagaatacccctggtttcattcactggaagttcaaaggtgggtcagaaggttcaacgaattgtcagtgagaggtttggtaaatgcttacttgaattaagtgggaacaacgccataattgttatggatgatgctgacatcgagctggcagtgcgttctatattgtttgcagccgttggtactgctggtcagcgctgcacaacatgccgtagattgtatcttcatgaaactatatatcagaatgtattagataaactagtcggactttacaagcaagtcaagattgggaaccctttggagaaaggaactctagttgggccactacatactcaccagtcgaaggagaattttgagaaggggattggggccattaaatctcaggggggaaagattgctgtaggtggatcaactgtaggttcagatggcaattatgtgcagccaacaattgttgagatttctccaactgcagctgtggtgaaagaagagttgtttggtccagttctgtatgttatgaaattcaagagtcttgatgaagcaatagaattgaacaactccgtaccacaaggattaagtagctcaatcttcacaagaaaaccagaaattctctttaaatggattgggccacagggcagtgattgtggtatagtgaatgtaaacattcctactaatggcgctgagattggcggtgcctttggtggagagaaggcaactggtggtggccgagaagcagggagcgactcttggaagcaatacatgagacgctcaacatgtacaatcaattatgggagcgaactaccacttgctcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0033993 GO:0042221 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00260 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00260 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

336

Amino Acids

35.75

Weight (kDa)

8.49

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54100 AT1G54100
fragaria_vesca	FvH4_1g08890 FvH4_1g08890 FvH4_1g08890 FvH4_1g08890
malus_domestica	MD02G1094300.v1.1 MD15G1219200.v1.1
prunus_persica	Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1
pyrus_communis	pycom02g07450 pycom02g07460 pycom15g19430 pycom15g19450
rosa_chinensis	RchiOBHm_Chr2g0095351
rosa_laevigata	RLG00000016557
rosa_multiflora	Rmu_sc0024400.1_g000001 Rmu_sc0041866.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146450
rosa_rugosa	Rorug02G0049900
rosa_samantha	Rh2AG098100 Rh2BG099300 Rh2CG101300 Rh2DG098900
rosa_wichuraiana	Rw2G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	887
AciI	CCGC	2 cut(s)	156, 885
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	3 cut(s)	547, 716, 801
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	3 cut(s)	382, 759, 973
AfeI	AGCGCT	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	541, 869
AflIII	ACRYGT	1 cut(s)	968
AgsI	TTSAA	5 cut(s)	237, 257, 296, 721, 748
AhlI	ACTAGT	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AluBI	AGCT	5 cut(s)	106, 173, 346, 671, 777
AluI	AGCT	5 cut(s)	106, 173, 346, 671, 777
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	952
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	140
Aor51HI	AGCGCT	1 cut(s)	395
AoxI	GGCC	4 cut(s)	518, 567, 821, 919
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	4 cut(s)	371, 396, 637, 668
ApoI	RAATTY	3 cut(s)	547, 716, 801
AspLEI	GCGC	3 cut(s)	34, 396, 875
AspS9I	GGNCC	4 cut(s)	518, 567, 695, 821
AsuC2I	CCSGG	2 cut(s)	141, 142
AsuHPI	GGTGA	4 cut(s)	145, 194, 524, 688
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	4 cut(s)	383, 383, 649, 680
BccI	CCATC	2 cut(s)	9, 617
BceAI	ACGGC	2 cut(s)	359, 393
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	2 cut(s)	141, 142
BcoDI	GTCTC	1 cut(s)	952
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	2 cut(s)	458, 512
BfmI	CTRYAG	3 cut(s)	597, 612, 666
BfoI	RGCGCY	2 cut(s)	397, 876
BisI	GCNGC	4 cut(s)	372, 397, 638, 669
BlsI	GCNGC	4 cut(s)	373, 398, 639, 670
Bme1390I	CCNGG	3 cut(s)	141, 142, 215
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	4 cut(s)	518, 567, 695, 821
BmiI	GGNNCC	3 cut(s)	491, 568, 889
BmrFI	CCNGG	3 cut(s)	141, 142, 215
BmsI	GCATC	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	141, 142
BsaJI	CCNNGG	4 cut(s)	114, 140, 141, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 869
Bse1I	ACTGG	4 cut(s)	232, 535, 698, 916
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	4 cut(s)	114, 140, 141, 213
BseGI	GGATG	2 cut(s)	20, 334
BseLI	CCNNNNNNNGG	2 cut(s)	541, 869
BseMII	CTCAG	2 cut(s)	593, 867
BseNI	ACTGG	4 cut(s)	232, 535, 698, 916
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	4 cut(s)	383, 383, 649, 680
BsgI	GTGCAG	2 cut(s)	382, 656
BshFI	GGCC	4 cut(s)	520, 569, 823, 921
BshNI	GGYRCC	1 cut(s)	887
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	541, 869
BsmAI	GTCTC	1 cut(s)	952
BsmBI	CGTCTC	1 cut(s)	952
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	520, 569, 823, 921
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	971
Bsp143I	GATC	1 cut(s)	605
BspACI	CCGC	2 cut(s)	156, 885
BspANI	GGCC	4 cut(s)	520, 569, 823, 921
BspCNI	CTCAG	2 cut(s)	592, 868
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	491, 568, 889
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	887
BsrGI	TGTACA	1 cut(s)	971
BsrI	ACTGG	4 cut(s)	232, 535, 698, 916
BssECI	CCNNGG	4 cut(s)	114, 140, 141, 213
BssMI	GATC	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	50, 613
Bst6I	CTCTTC	1 cut(s)	678
BstAPI	GCANNNNNTGC	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	25, 348
BstDEI	CTNAG	3 cut(s)	579, 876, 1005
BstF5I	GGATG	2 cut(s)	20, 334
BstH2I	RGCGCY	2 cut(s)	397, 876
BstHHI	GCGC	3 cut(s)	34, 396, 875
BstKTI	GATC	1 cut(s)	608
BstMAI	GTCTC	1 cut(s)	952
BstMBI	GATC	1 cut(s)	605
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 352, 405
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	2 cut(s)	408, 972
BstSCI	CCNGG	3 cut(s)	139, 140, 213
BstSFI	CTRYAG	3 cut(s)	597, 612, 666
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	4 cut(s)	383, 383, 649, 680
BsuRI	GGCC	4 cut(s)	520, 569, 823, 921
BtsCI	GGATG	2 cut(s)	20, 334
BtsI	GCAGTG	2 cut(s)	357, 838
BtsIMutI	CAGTG	4 cut(s)	225, 274, 357, 838
Cac8I	GCNNGC	2 cut(s)	25, 348
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	3 cut(s)	34, 396, 875
Cfr13I	GGNCC	4 cut(s)	518, 567, 695, 821
Cfr9I	CCCGGG	1 cut(s)	140
CseI	GACGC	1 cut(s)	969
Csp6I	GTAC	3 cut(s)	381, 758, 972
CviAII	CATG	4 cut(s)	405, 425, 955, 969
CviQI	GTAC	3 cut(s)	381, 758, 972
DdeI	CTNAG	3 cut(s)	579, 876, 1005
DpnI	GATC	1 cut(s)	607
DpnII	GATC	1 cut(s)	605
DraI	TTTAAA	1 cut(s)	811
EaeI	YGGCCR	1 cut(s)	919
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	695
Eco47III	AGCGCT	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	952
FaeI	CATG	4 cut(s)	408, 428, 958, 972
FatI	CATG	4 cut(s)	404, 424, 954, 968
FauNDI	CATATG	1 cut(s)	9
Fnu4HI	GCNGC	4 cut(s)	372, 397, 638, 669
FokI	GGATG	2 cut(s)	27, 341
Fsp4HI	GCNGC	4 cut(s)	372, 397, 638, 669
FspBI	CTAG	2 cut(s)	458, 512
GlaI	GCGC	3 cut(s)	33, 395, 874
GluI	GCNGC	4 cut(s)	372, 397, 638, 669
HaeII	RGCGCY	2 cut(s)	397, 876
HaeIII	GGCC	4 cut(s)	520, 569, 823, 921
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	969
HhaI	GCGC	3 cut(s)	34, 396, 875
Hin1II	CATG	4 cut(s)	408, 428, 958, 972
Hin6I	GCGC	3 cut(s)	32, 394, 873
HinP1I	GCGC	3 cut(s)	32, 394, 873
HinfI	GANTC	2 cut(s)	724, 938
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	145, 194, 524, 688
Hpy166II	GTNNAC	2 cut(s)	68, 856
Hpy188I	TCNGA	4 cut(s)	249, 441, 464, 622
Hpy188III	TCNNGA	6 cut(s)	58, 122, 425, 481, 721, 728
Hpy8I	GTNNAC	2 cut(s)	68, 856
HpyAV	CCTTC	5 cut(s)	55, 244, 535, 550, 898
HpyCH4III	ACNGT	2 cut(s)	50, 613
HpyCH4V	TGCA	5 cut(s)	68, 371, 399, 637, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 352, 405
HpyF3I	CTNAG	3 cut(s)	579, 876, 1005
Hsp92II	CATG	4 cut(s)	408, 428, 958, 972
HspAI	GCGC	3 cut(s)	32, 394, 873
Kzo9I	GATC	1 cut(s)	605
LmnI	GCTCC	3 cut(s)	170, 933, 987
Lsp1109I	GCAGC	4 cut(s)	383, 383, 649, 680
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	2 cut(s)	458, 512
MaeIII	GTNAC	3 cut(s)	44, 85, 97
MalI	GATC	1 cut(s)	607
MboI	GATC	1 cut(s)	605
MboII	GAAGA	3 cut(s)	413, 695, 775
MfeI	CAATTG	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	70
MlyI	GAGTC	2 cut(s)	733, 932
MmeI	TCCRAC	2 cut(s)	442, 686
MnlI	CCTC	2 cut(s)	109, 267
MseI	TTAA	4 cut(s)	299, 573, 770, 810
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	3 cut(s)	141, 142, 215
MunI	CAATTG	1 cut(s)	645
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	29, 352, 405
NciI	CCSGG	2 cut(s)	141, 142
NdeI	CATATG	1 cut(s)	9
NdeII	GATC	1 cut(s)	605
NlaIII	CATG	4 cut(s)	408, 428, 958, 972
NlaIV	GGNNCC	3 cut(s)	491, 568, 889
NmeAIII	GCCGAG	2 cut(s)	139, 947
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	2 cut(s)	408, 972
PagI	TCATGA	1 cut(s)	424
PciI	ACATGT	1 cut(s)	968
PctI	GAATGC	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	373, 398, 639, 670
PleI	GAGTC	2 cut(s)	732, 932
PpsI	GAGTC	2 cut(s)	732, 932
PscI	ACATGT	1 cut(s)	968
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	3 cut(s)	491, 568, 889
PspPI	GGNCC	4 cut(s)	518, 567, 695, 821
PstI	CTGCAG	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	3 cut(s)	382, 759, 973
RsaNI	GTAC	3 cut(s)	381, 758, 972
SaqAI	TTAA	4 cut(s)	299, 573, 770, 810
SatI	GCNGC	4 cut(s)	372, 397, 638, 669
Sau3AI	GATC	1 cut(s)	605
Sau96I	GGNCC	4 cut(s)	518, 567, 695, 821
SchI	GAGTC	2 cut(s)	733, 932
ScrFI	CCNGG	3 cut(s)	141, 142, 215
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	3 cut(s)	597, 612, 666
SinI	GGWCC	1 cut(s)	695
SmaI	CCCGGG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	457
SsiI	CCGC	2 cut(s)	156, 885
SspMI	CTAG	2 cut(s)	458, 512
StyD4I	CCNGG	3 cut(s)	139, 140, 213
TaaI	ACNGT	2 cut(s)	50, 613
TaqI	TCGA	2 cut(s)	342, 539
TatI	WGTACW	1 cut(s)	971
Tru1I	TTAA	4 cut(s)	299, 573, 770, 810
Tru9I	TTAA	4 cut(s)	299, 573, 770, 810
TscAI	CASTG	4 cut(s)	232, 274, 357, 838
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	4 cut(s)	371, 396, 637, 668
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	6 cut(s)	17, 210, 413, 441, 728, 747
TspGWI	ACGGA	1 cut(s)	745
TspMI	CCCGGG	1 cut(s)	140
TspRI	CASTG	4 cut(s)	232, 274, 357, 838
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	3 cut(s)	547, 716, 801
XceI	RCATGY	2 cut(s)	408, 972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmaI	CCCGGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	458, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.