Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006153

Physical Location & Seq

Genomic Coordinates Forward (+)

13854831 .. 13857174

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19430.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAATTTCAAAGATAAGACTACTCCCATTTCTATACGAAATTACAAACCCAGCAAACCAGCTACTTCGTTCCTCCTCCCACTCTCTGATTCAATTATACGTCTTAACATTTCTGCTAAATTATTACCGCAAAATCCAACATATCCATTTCTCACAACCCTATTTCTCATAATCCAAATCAAATCATCGATGGGTTTTGCCAAGAAAGATCACGAGTTTCTGAGGGCGATCGGTCTGGCTCCCGAGAATCCAGGAGGATTCATCAATGGCAAGTGGAAGGCGAGCGGCCCATTTATCTCTACTGTCAGCCCTTCCAACAATCAGGAAATTGCGAAAGTCACGGAAGTGTCGATGGAAGAGTATGAGGAGGACCTGTGGAGCTGCAATGGTGCTGCAAAGACATGGAAGAGTCTTCCGGCGCTGAAGAGAGGTGAGATTGTTAGGCAGATAGAAGATGCATTGCGAGAGAAATTGCAGCATCTGGGGAAGCTTGTGTCCCTCGAGATGGGAAAAATACTTGCTGAAGGAATTGGGGAAGTTCAGGAGGTTATCGATATGTGTGATTTTGCTGTTGGACTGAGTCGACAACTGAATGGATCTATCATACCTTCAGAACGTCCGGATCATATGATGTTTGAGGTCTGGAATCCATTGGGGATAGTTGGTGTCATCACCGCTTTCAATTTCCCATGTGCTGTTCTTGGATGGAATGCCTGCATTGCGTTAGTCTGCAGTAATTGGTTGTCTGGAAGGGTGCACCAACAACTCCGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0033993 GO:0042221 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00260 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00260 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

259

Amino Acids

28.73

Weight (kDa)

8.24

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54100 AT1G54100
fragaria_vesca	FvH4_1g08890 FvH4_1g08890 FvH4_1g08890 FvH4_1g08890
malus_domestica	MD02G1094300.v1.1 MD15G1219200.v1.1
prunus_persica	Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1
pyrus_communis	pycom02g07450 pycom02g07460 pycom15g19430 pycom15g19450
rosa_chinensis	RchiOBHm_Chr2g0095351
rosa_laevigata	RLG00000016557
rosa_multiflora	Rmu_sc0024400.1_g000001 Rmu_sc0041866.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146450
rosa_rugosa	Rorug02G0049900
rosa_samantha	Rh2AG098100 Rh2BG099300 Rh2CG101300 Rh2DG098900
rosa_wichuraiana	Rw2G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	583
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	3 cut(s)	128, 285, 675
AclWI	GGATC	2 cut(s)	604, 630
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	3 cut(s)	443, 543, 594
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	10, 93, 682
AjnI	CCWGG	1 cut(s)	250
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	3 cut(s)	62, 381, 490
AluI	AGCT	3 cut(s)	62, 381, 490
Alw21I	GWGCWC	1 cut(s)	759
Alw44I	GTGCAC	1 cut(s)	755
AlwI	GGATC	2 cut(s)	604, 630
AlwNI	CAGNNNCTG	1 cut(s)	481
Ama87I	CYCGRG	2 cut(s)	242, 500
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	1 cut(s)	286
ApaLI	GTGCAC	1 cut(s)	755
ApeKI	GCWGC	3 cut(s)	381, 392, 475
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	287, 370
AsuHPI	GGTGA	2 cut(s)	443, 664
AvaI	CYCGRG	2 cut(s)	242, 500
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	759
BauI	CACGAG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	368, 379, 487
BccI	CCATC	4 cut(s)	184, 346, 499, 699
BciT130I	CCWGG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	730
BfoI	RGCGCY	1 cut(s)	422
BisI	GCNGC	4 cut(s)	286, 382, 393, 476
BlsI	GCNGC	4 cut(s)	287, 383, 394, 477
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	370
BmeT110I	CYCGRG	2 cut(s)	242, 500
BmgT120I	GGNCC	2 cut(s)	287, 370
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	445, 487
BpiI	GAAGAC	1 cut(s)	404
Bsa29I	ATCGAT	2 cut(s)	188, 552
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse3DI	GCAATG	3 cut(s)	391, 458, 717
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	252
BseCI	ATCGAT	2 cut(s)	188, 552
BseGI	GGATG	1 cut(s)	710
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMI	GCAATG	3 cut(s)	391, 458, 717
BseMII	CTCAG	2 cut(s)	212, 569
BseRI	GAGGAG	2 cut(s)	65, 380
BseSI	GKGCMC	1 cut(s)	759
BseXI	GCAGC	3 cut(s)	368, 379, 487
BseYI	CCCAGC	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	288
BshVI	ATCGAT	2 cut(s)	188, 552
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	759
BsiHKCI	CYCGRG	2 cut(s)	242, 500
BsiSI	CCGG	2 cut(s)	416, 620
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	2 cut(s)	242, 500
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	4 cut(s)	208, 228, 596, 622
BspACI	CCGC	3 cut(s)	128, 285, 675
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	213, 570
BspDI	ATCGAT	2 cut(s)	188, 552
BspEI	TCCGGA	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	734
BspPI	GGATC	2 cut(s)	604, 630
BsrBI	CCGCTC	1 cut(s)	285
BsrDI	GCAATG	3 cut(s)	391, 458, 717
BssMI	GATC	4 cut(s)	208, 228, 596, 622
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	3 cut(s)	351, 401, 419
BstC8I	GCNNGC	2 cut(s)	283, 715
BstDEI	CTNAG	2 cut(s)	221, 578
BstF5I	GGATG	1 cut(s)	710
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	4 cut(s)	211, 231, 599, 625
BstMBI	GATC	4 cut(s)	208, 228, 596, 622
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	730
BstSLI	GKGCMC	1 cut(s)	759
BstV1I	GCAGC	3 cut(s)	368, 379, 487
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
Bsu15I	ATCGAT	2 cut(s)	188, 552
BsuRI	GGCC	1 cut(s)	288
BsuTUI	ATCGAT	2 cut(s)	188, 552
BtsCI	GGATG	1 cut(s)	710
Cac8I	GCNNGC	2 cut(s)	283, 715
CaiI	CAGNNNCTG	1 cut(s)	481
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	287, 370
ClaI	ATCGAT	2 cut(s)	188, 552
CviAII	CATG	2 cut(s)	402, 690
CviJI	RGCY	6 cut(s)	62, 239, 288, 309, 381, 490
CviKI_1	RGCY	6 cut(s)	62, 239, 288, 309, 381, 490
DdeI	CTNAG	2 cut(s)	221, 578
DpnI	GATC	4 cut(s)	210, 230, 598, 624
DpnII	GATC	4 cut(s)	208, 228, 596, 622
Eam1104I	CTCTTC	3 cut(s)	351, 401, 419
EarI	CTCTTC	3 cut(s)	351, 401, 419
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	3 cut(s)	443, 543, 594
Eco88I	CYCGRG	2 cut(s)	242, 500
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	2 cut(s)	405, 693
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	2 cut(s)	401, 689
FauNDI	CATATG	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	4 cut(s)	286, 382, 393, 476
FokI	GGATG	1 cut(s)	717
Fsp4HI	GCNGC	4 cut(s)	286, 382, 393, 476
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	4 cut(s)	286, 382, 393, 476
GsaI	CCCAGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	2 cut(s)	416, 620
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	405, 693
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	6 cut(s)	89, 247, 258, 409, 580, 646
HpaII	CCGG	2 cut(s)	416, 620
HphI	GGTGA	2 cut(s)	443, 664
Hpy166II	GTNNAC	2 cut(s)	584, 757
Hpy188I	TCNGA	3 cut(s)	88, 222, 613
Hpy188III	TCNNGA	8 cut(s)	212, 242, 323, 502, 542, 620, 643, 747
Hpy8I	GTNNAC	2 cut(s)	584, 757
HpyAV	CCTTC	5 cut(s)	271, 321, 518, 618, 744
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	2 cut(s)	100, 616
HpyCH4V	TGCA	7 cut(s)	384, 395, 458, 475, 717, 732, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	2 cut(s)	221, 578
HpySE526I	ACGT	2 cut(s)	100, 616
Hsp92II	CATG	2 cut(s)	405, 693
HspAI	GCGC	1 cut(s)	419
Kpn2I	TCCGGA	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	208, 228, 596, 622
LmnI	GCTCC	2 cut(s)	244, 378
Lsp1109I	GCAGC	3 cut(s)	368, 379, 487
LweI	GCATC	2 cut(s)	445, 487
MaeII	ACGT	2 cut(s)	100, 616
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	4 cut(s)	210, 230, 598, 624
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	4 cut(s)	208, 228, 596, 622
MboII	GAAGA	5 cut(s)	368, 404, 418, 436, 464
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	759
MluCI	AATT	9 cut(s)	4, 40, 93, 119, 327, 470, 528, 682, 736
MlyI	GAGTC	2 cut(s)	418, 589
MmeI	TCCRAC	3 cut(s)	161, 339, 553
Mph1103I	ATGCAT	1 cut(s)	460
MroI	TCCGGA	1 cut(s)	619
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	2 cut(s)	416, 620
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	719
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	4 cut(s)	208, 228, 596, 622
NlaIII	CATG	2 cut(s)	405, 693
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	460
OliI	CACNNNNGTG	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	4 cut(s)	89, 247, 258, 646
PflFI	GACNNNGTC	1 cut(s)	579
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	287, 383, 394, 477
Ple19I	CGATCG	1 cut(s)	231
PleI	GAGTC	2 cut(s)	417, 588
PpsI	GAGTC	2 cut(s)	417, 588
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	287, 370
PspPPI	RGGWCCY	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	734
PstNI	CAGNNNCTG	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	596
PsyI	GACNNNGTC	1 cut(s)	579
PvuI	CGATCG	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	286, 382, 393, 476
Sau3AI	GATC	4 cut(s)	208, 228, 596, 622
Sau96I	GGNCC	2 cut(s)	287, 370
SchI	GAGTC	2 cut(s)	418, 589
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	759
SfaNI	GCATC	2 cut(s)	445, 487
SfcI	CTRYAG	1 cut(s)	730
Sfr274I	CTCGAG	1 cut(s)	500
SinI	GGWCC	1 cut(s)	370
SlaI	CTCGAG	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	9 cut(s)	4, 40, 93, 119, 327, 470, 528, 682, 736
SsiI	CCGC	3 cut(s)	128, 285, 675
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	2 cut(s)	103, 619
TaqI	TCGA	5 cut(s)	188, 350, 501, 552, 583
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	9 cut(s)	4, 40, 93, 119, 327, 470, 528, 682, 736
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	4 cut(s)	89, 247, 258, 646
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	3 cut(s)	381, 392, 475
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	17, 250
TspGWI	ACGGA	2 cut(s)	356, 758
Tth111I	GACNNNGTC	1 cut(s)	579
VneI	GTGCAC	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	583
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.