Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006153

Physical Location & Seq

Genomic Coordinates Forward (+)

3861305 .. 3861992

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTCTCTTAGCCCATTGATGTTCAGGTCACTGGTGAGGCTACTAACATCACTGGTTCGTGATCCGGCTGCTTCAATCTCAACCCTGCTCTTCTACAGTGAGCTTCTACCTCAGAATATCGTGCTAGAAAGATTAGTTCGACATGAATTGCTTGACCAAGAAAACTATTTGTTCCACTTCCTGGTCAACTTTTTGAGATGTTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0033993 GO:0042221 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00260 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00260 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

69

Amino Acids

8.23

Weight (kDa)

6.71

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54100 AT1G54100
fragaria_vesca	FvH4_1g08890 FvH4_1g08890 FvH4_1g08890 FvH4_1g08890
malus_domestica	MD02G1094300.v1.1 MD15G1219200.v1.1
prunus_persica	Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1 Prupe.7G196700_v2.0.a1
pyrus_communis	pycom02g07450 pycom02g07460 pycom15g19430 pycom15g19450
rosa_chinensis	RchiOBHm_Chr2g0095351
rosa_laevigata	RLG00000016557
rosa_multiflora	Rmu_sc0024400.1_g000001 Rmu_sc0041866.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146450
rosa_rugosa	Rorug02G0049900
rosa_samantha	Rh2AG098100 Rh2BG099300 Rh2CG101300 Rh2DG098900
rosa_wichuraiana	Rw2G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AclWI	GGATC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	36, 57
BseBI	CCWGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	36, 57
BseXI	GCAGC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	36, 57
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	8, 111
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	55
BtsIMutI	CAGTG	3 cut(s)	29, 50, 103
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	4 cut(s)	12, 40, 68, 103
CviKI_1	RGCY	4 cut(s)	12, 40, 68, 103
DdeI	CTNAG	2 cut(s)	8, 111
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	146
FaiI	YATR	1 cut(s)	144
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	1 cut(s)	69
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	8, 111
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	95
LpnPI	CCDG	7 cut(s)	10, 17, 38, 78, 98, 167, 194
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	2 cut(s)	30, 120
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	3 cut(s)	29, 105, 112
SfcI	CTRYAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	139
TasI	AATT	1 cut(s)	146
TscAI	CASTG	3 cut(s)	36, 57, 103
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	3 cut(s)	36, 57, 103
Van91I	CCANNNNNTGG	1 cut(s)	181
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.