AT1G54120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013138
Physical Location & Seq
Forward (+)
20206930 .. 20207555
626 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54120.1

Sequence Viewer

Length: 375 bp
ATGGATCAACGCATCGCCGCAATCCCCGTGTTCCGGTGGTCTAGGAGCCGTCGAAAGATTCATATCCGTCGCCGTAAGTCGCAGGTGGTACGTCTTGGTGGGAAGAACAGTGCGGTGTCACGTGGCGGATTCTCGTTAAAGAAGATGGTAAGGAGGATGAAGCTGAGATGGTTGAAGCTACACTACGTGAGAGTTGTGAAGAAGATAAAAGTGTTTTATCGTAATTTGGTTAAAGAGTTCGTAGACGCAGGAGCTGAGCTTGAAGCGATTCAGCAGCGAATGGCGGTTGAAGCGGCTGCGTTTGCGGTTCCCGGTTTAGGTCTCTCTTTCTCTTCTTTTTCAGTCCATGACCGAGCACGGTATTTTCTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.43

Weight (kDa)

11.82

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 243
AciI CCGC 6 cut(s) 18, 113, 126, 284, 293, 305
AclWI GGATC 1 cut(s) 12
AcvI CACGTG 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 33, 317
AgsI TTSAA 3 cut(s) 175, 263, 290
AluBI AGCT 4 cut(s) 163, 178, 254, 259
AluI AGCT 4 cut(s) 163, 178, 254, 259
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 274, 296
Asp700I GAANNNNTTC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbrPI CACGTG 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 283, 286
BccI CCATC 2 cut(s) 139, 162
BceAI ACGGC 2 cut(s) 33, 57
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 4 cut(s) 18, 275, 294, 297
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 4 cut(s) 19, 276, 295, 298
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 2 cut(s) 47, 309
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 312
BsaAI YACGTR 2 cut(s) 122, 187
BsaBI GATNNNNATC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 317
Bse8I GATNNNNATC 1 cut(s) 62
BseGI GGATG 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 2 cut(s) 33, 317
BseMII CTCAG 2 cut(s) 155, 246
BseXI GCAGC 2 cut(s) 283, 286
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 34, 312
BslI CCNNNNNNNGG 2 cut(s) 33, 317
BsmAI GTCTC 1 cut(s) 326
Bso31I GGTCTC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 1 cut(s) 4
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 6 cut(s) 18, 113, 126, 284, 293, 305
BspCNI CTCAG 2 cut(s) 156, 247
BspLI GGNNCC 2 cut(s) 47, 309
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 326
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 2 cut(s) 110, 360
Bst6I CTCTTC 1 cut(s) 337
BstBAI YACGTR 2 cut(s) 122, 187
BstDEI CTNAG 2 cut(s) 164, 255
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 290, 302
BstSCI CCNGG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 283, 286
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 254
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 89
CviAII CATG 1 cut(s) 347
CviJI RGCY 6 cut(s) 48, 163, 178, 254, 259, 296
CviKI_1 RGCY 6 cut(s) 48, 163, 178, 254, 259, 296
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 164, 255
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
EciI GGCGGA 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 326
Eco72I CACGTG 1 cut(s) 122
FaeI CATG 1 cut(s) 350
FaiI YATR 3 cut(s) 63, 348, 373
FatI CATG 1 cut(s) 346
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 18, 275, 294, 297
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 4 cut(s) 18, 275, 294, 297
FspBI CTAG 1 cut(s) 42
GluI GCNGC 4 cut(s) 18, 275, 294, 297
HapII CCGG 2 cut(s) 34, 312
HgaI GACGC 1 cut(s) 254
Hin1II CATG 1 cut(s) 350
HinfI GANTC 3 cut(s) 58, 129, 268
HpaII CCGG 2 cut(s) 34, 312
Hpy166II GTNNAC 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 54, 72
HpyCH4III ACNGT 2 cut(s) 110, 360
HpyCH4IV ACGT 3 cut(s) 91, 121, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 302
HpyF3I CTNAG 2 cut(s) 164, 255
HpySE526I ACGT 3 cut(s) 91, 121, 186
Hsp92II CATG 1 cut(s) 350
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 45, 251
LpnPI CCDG 4 cut(s) 47, 68, 234, 325
Lsp1109I GCAGC 2 cut(s) 283, 286
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 42
MaeII ACGT 3 cut(s) 91, 121, 186
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 5 cut(s) 115, 154, 211, 214, 324
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 1 cut(s) 223
MnlI CCTC 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 2 cut(s) 137, 231
MspI CCGG 2 cut(s) 34, 312
MspR9I CCNGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 290, 302
NciI CCSGG 1 cut(s) 312
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 2 cut(s) 47, 309
NmuCI GTSAC 1 cut(s) 117
PaqCI CACCTGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 3 cut(s) 58, 129, 268
PkrI GCNGC 4 cut(s) 19, 276, 295, 298
PmaCI CACGTG 1 cut(s) 122
PmlI CACGTG 1 cut(s) 122
Ppu21I YACGTR 2 cut(s) 122, 187
PspCI CACGTG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 47, 309
PstNI CAGNNNCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 137, 231
SatI GCNGC 4 cut(s) 18, 275, 294, 297
Sau3AI GATC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 358
SetI ASST 9 cut(s) 87, 94, 124, 165, 180, 189, 256, 261, 322
SfaNI GCATC 1 cut(s) 21
Sse9I AATT 1 cut(s) 223
SsiI CCGC 6 cut(s) 18, 113, 126, 284, 293, 305
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 110, 360
TaiI ACGT 3 cut(s) 94, 124, 189
TaqI TCGA 1 cut(s) 52
TaqII GACCGA 1 cut(s) 366
TasI AATT 1 cut(s) 223
TauI GCSGC 2 cut(s) 20, 296
TfiI GAWTC 3 cut(s) 58, 129, 268
Tru1I TTAA 2 cut(s) 137, 231
Tru9I TTAA 2 cut(s) 137, 231
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 2 cut(s) 274, 296
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 50, 173
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.