AT3G14060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013138
Physical Location & Seq
Reverse (-)
4656782 .. 4657723
942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14060.1

Sequence Viewer

Length: 378 bp
ATGGATCCCCATTTAGTCATCACTGCCGCCTCCAGCGCATTCCGGTGGCCGTCGAGTCGCCGAAAGATCTATCTCCGTCGTCGTAAACCACAAGTTGTGCGTCTCGGCGGGAAAAACAGTACGCCACGTGGTAGTTTCTCGCTCAAGAAGGTGGTGACGAGGATGAGACTCAAGTGGCTGAGACTGTACTACGTGAGGCTCGTGAAGAAGATCAAAGCGTATTATCGTACTATAGTGAAAGAGTTCGAGGAAGCCGGAGCCGCCACCATCCAGCAGCGCATGACGGTGGAAACGGCTGCTTTTGCCGCTCCTGGCTTAGGCTTATCTTTCTGTCCCATGTCCGGCTACGTCGACCAACCTCGTTTTTTTCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.42

Weight (kDa)

11.18

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 351
AciI CCGC 4 cut(s) 27, 108, 261, 306
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 47
AcvI CACGTG 1 cut(s) 128
AfaI GTAC 3 cut(s) 121, 188, 229
AfiI CCNNNNNNNGG 2 cut(s) 317, 341
AjnI CCWGG 1 cut(s) 310
Alw26I GTCTC 3 cut(s) 107, 160, 175
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 274, 296
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 2 cut(s) 38, 279
AsuHPI GGTGA 1 cut(s) 166
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 200
BbrPI CACGTG 1 cut(s) 128
BbvI GCAGC 2 cut(s) 283, 286
BccI CCATC 1 cut(s) 275
BceAI ACGGC 2 cut(s) 34, 309
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 107, 160, 175
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 66
BisI GCNGC 5 cut(s) 27, 261, 275, 297, 306
BlsI GCNGC 5 cut(s) 28, 262, 276, 298, 307
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 2 cut(s) 6, 259
BmrFI CCNGG 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 316
BpuEI CTTGAG 2 cut(s) 128, 155
BsaAI YACGTR 2 cut(s) 128, 193
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 341
BseBI CCWGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 168, 267
BseLI CCNNNNNNNGG 2 cut(s) 317, 341
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 283, 286
BshFI GGCC 1 cut(s) 49
BsiSI CCGG 3 cut(s) 43, 255, 342
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 317, 341
BsmAI GTCTC 3 cut(s) 107, 160, 175
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 1 cut(s) 49
Bsp143I GATC 3 cut(s) 4, 66, 210
BspACI CCGC 4 cut(s) 27, 108, 261, 306
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 6, 259
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 308
BssMI GATC 3 cut(s) 4, 66, 210
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 119, 186, 286
BstBAI YACGTR 2 cut(s) 128, 193
BstDEI CTNAG 2 cut(s) 179, 316
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 168, 267
BstHHI GCGC 2 cut(s) 38, 279
BstKTI GATC 3 cut(s) 7, 69, 213
BstMAI GTCTC 3 cut(s) 107, 160, 175
BstMBI GATC 3 cut(s) 4, 66, 210
BstMWI GCNNNNNNNGC 4 cut(s) 35, 260, 302, 305
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 283, 286
BstX2I RGATCY 2 cut(s) 4, 66
BstYI RGATCY 2 cut(s) 4, 66
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 168, 267
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
CfoI GCGC 2 cut(s) 38, 279
CseI GACGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 120, 187, 228
CviAII CATG 2 cut(s) 280, 337
CviJI RGCY 9 cut(s) 49, 178, 199, 254, 260, 296, 315, 321, 345
CviKI_1 RGCY 9 cut(s) 49, 178, 199, 254, 260, 296, 315, 321, 345
CviQI GTAC 3 cut(s) 120, 187, 228
DdeI CTNAG 2 cut(s) 179, 316
DpnI GATC 3 cut(s) 6, 68, 212
DpnII GATC 3 cut(s) 4, 66, 210
EaeI YGGCCR 1 cut(s) 47
Eco72I CACGTG 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 2 cut(s) 283, 340
FaiI YATR 4 cut(s) 233, 281, 338, 376
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 279, 336
FauI CCCGC 1 cut(s) 101
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 5 cut(s) 27, 261, 275, 297, 306
FokI GGATG 2 cut(s) 175, 254
Fsp4HI GCNGC 5 cut(s) 27, 261, 275, 297, 306
GlaI GCGC 2 cut(s) 37, 278
GluI GCNGC 5 cut(s) 27, 261, 275, 297, 306
GsuI CTGGAG 1 cut(s) 16
HaeIII GGCC 1 cut(s) 49
HapII CCGG 3 cut(s) 43, 255, 342
HgaI GACGC 1 cut(s) 89
HhaI GCGC 2 cut(s) 38, 279
Hin1II CATG 2 cut(s) 283, 340
Hin6I GCGC 2 cut(s) 36, 277
HinP1I GCGC 2 cut(s) 36, 277
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 55, 168
HpaII CCGG 3 cut(s) 43, 255, 342
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 86, 352
Hpy188III TCNNGA 2 cut(s) 145, 202
Hpy8I GTNNAC 2 cut(s) 86, 352
Hpy99I CGWCG 4 cut(s) 55, 81, 84, 353
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 3 cut(s) 119, 186, 286
HpyCH4IV ACGT 3 cut(s) 127, 192, 348
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 260, 302, 305
HpyF3I CTNAG 2 cut(s) 179, 316
HpySE526I ACGT 3 cut(s) 127, 192, 348
Hsp92II CATG 2 cut(s) 283, 340
HspAI GCGC 2 cut(s) 36, 277
Kzo9I GATC 3 cut(s) 4, 66, 210
LmnI GCTCC 2 cut(s) 257, 313
LpnPI CCDG 7 cut(s) 46, 56, 268, 284, 297, 324, 355
Lsp1109I GCAGC 2 cut(s) 283, 286
MaeII ACGT 3 cut(s) 127, 192, 348
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 6, 68, 212
MbiI CCGCTC 1 cut(s) 308
MboI GATC 3 cut(s) 4, 66, 210
MboII GAAGA 2 cut(s) 217, 220
MflI RGATCY 2 cut(s) 4, 66
MlyI GAGTC 2 cut(s) 64, 162
MnlI CCTC 5 cut(s) 40, 153, 189, 241, 369
MroXI GAANNNNTTC 1 cut(s) 242
MslI CAYNNNNRTG 2 cut(s) 43, 284
MspI CCGG 3 cut(s) 43, 255, 342
MspR9I CCNGG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 4 cut(s) 35, 260, 302, 305
NdeII GATC 3 cut(s) 4, 66, 210
NlaIII CATG 2 cut(s) 283, 340
NlaIV GGNNCC 2 cut(s) 6, 259
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 242
PkrI GCNGC 5 cut(s) 28, 262, 276, 298, 307
PleI GAGTC 2 cut(s) 63, 162
PmaCI CACGTG 1 cut(s) 128
PmlI CACGTG 1 cut(s) 128
PpsI GAGTC 2 cut(s) 63, 162
Ppu21I YACGTR 2 cut(s) 128, 193
Psp6I CCWGG 1 cut(s) 310
PspCI CACGTG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 6, 259
PsuI RGATCY 2 cut(s) 4, 66
RsaI GTAC 3 cut(s) 121, 188, 229
RsaNI GTAC 3 cut(s) 120, 187, 228
RseI CAYNNNNRTG 2 cut(s) 43, 284
SalI GTCGAC 1 cut(s) 350
SatI GCNGC 5 cut(s) 27, 261, 275, 297, 306
Sau3AI GATC 3 cut(s) 4, 66, 210
SchI GAGTC 2 cut(s) 64, 162
ScrFI CCNGG 1 cut(s) 312
SetI ASST 5 cut(s) 130, 153, 195, 351, 361
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 43, 284
SmlI CTYRAG 2 cut(s) 143, 170
SmoI CTYRAG 2 cut(s) 143, 170
SsiI CCGC 4 cut(s) 27, 108, 261, 306
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 119, 186, 286
TaiI ACGT 3 cut(s) 130, 195, 351
TaqI TCGA 3 cut(s) 53, 246, 351
TatI WGTACW 1 cut(s) 186
TauI GCSGC 3 cut(s) 29, 263, 308
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 274, 296
Tsp45I GTSAC 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.