Prupe.3G039100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013138
Physical Location & Seq
Forward (+)
2812864 .. 2813957
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G039100.1

Sequence Viewer

Length: 369 bp
ATGGCTCAAGATCATGATCTCCACCGCCAAAATCAGCCGCTGGTGAGGCGCGGTTTTCCTCTCCGCCGCAGCCGGAAACTGCCCGTTGCCCGCCTCGGCGGACCGAAGCCGAAGCGGGGACTTGTGTTTGTTAAAATGCTCAAGAGGATCAGGATGAGGTGGCTGAAGCTTCAGTACTTGTGCATGTTGAAGAAGCTCAAGGAGTCTTACAAGAACATGATGAAGGACCTAATGGTAGCTGGCGCGAGCTTGGAGACCTTCCACCAGAGGATTTTCATGGAGACTTCTTTCGCCATCCCACTGGGAGTTTCTCTTTCCAGCTACCCTTCTGTTGCTGGATCAGATCGGCCTCGAACCCTTTTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

11.36

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 51, 245
AciI CCGC 8 cut(s) 25, 38, 51, 64, 67, 91, 99, 115
AclWI GGATC 2 cut(s) 155, 346
AcuI CTGAAG 2 cut(s) 155, 185
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 5 cut(s) 169, 196, 239, 249, 321
AluI AGCT 5 cut(s) 169, 196, 239, 249, 321
Alw26I GTCTC 2 cut(s) 248, 275
AlwI GGATC 2 cut(s) 155, 346
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 69
AspLEI GCGC 2 cut(s) 51, 245
AspS9I GGNCC 2 cut(s) 101, 226
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 2 cut(s) 101, 226
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 248, 275
BisI GCNGC 3 cut(s) 38, 67, 70
BlsI GCNGC 3 cut(s) 39, 68, 71
BmcAI AGTACT 1 cut(s) 176
Bme18I GGWCC 2 cut(s) 101, 226
BmgT120I GGNCC 2 cut(s) 101, 226
BmrI ACTGGG 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 125, 182
BsaBI GATNNNNATC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 2 cut(s) 159, 294
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 2 cut(s) 51, 245
BshFI GGCC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 2 cut(s) 248, 275
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 5 cut(s) 10, 16, 147, 338, 343
BspACI CCGC 8 cut(s) 25, 38, 51, 64, 67, 91, 99, 115
BspANI GGCC 1 cut(s) 349
BspFNI CGCG 2 cut(s) 51, 245
BspHI TCATGA 1 cut(s) 13
BspPI GGATC 2 cut(s) 155, 346
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 5 cut(s) 10, 16, 147, 338, 343
BstC8I GCNNGC 3 cut(s) 91, 241, 247
BstF5I GGATG 2 cut(s) 159, 294
BstFNI CGCG 2 cut(s) 51, 245
BstHHI GCGC 2 cut(s) 51, 245
BstKTI GATC 5 cut(s) 13, 19, 150, 341, 346
BstMAI GTCTC 2 cut(s) 248, 275
BstMBI GATC 5 cut(s) 10, 16, 147, 338, 343
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 187
BstUI CGCG 2 cut(s) 51, 245
BstV1I GCAGC 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 1 cut(s) 349
BtsCI GGATG 2 cut(s) 159, 294
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 3 cut(s) 91, 241, 247
CaiI CAGNNNCTG 1 cut(s) 40
CciI TCATGA 1 cut(s) 13
CfoI GCGC 2 cut(s) 51, 245
Cfr13I GGNCC 2 cut(s) 101, 226
CpoI CGGWCCG 1 cut(s) 101
Csp6I GTAC 1 cut(s) 175
CspI CGGWCCG 1 cut(s) 101
CviAII CATG 5 cut(s) 14, 184, 217, 277, 364
CviQI GTAC 1 cut(s) 175
DpnI GATC 5 cut(s) 12, 18, 149, 340, 345
DpnII GATC 5 cut(s) 10, 16, 147, 338, 343
EciI GGCGGA 2 cut(s) 53, 114
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 2 cut(s) 101, 226
Eco57I CTGAAG 2 cut(s) 155, 185
EcoO109I RGGNCCY 1 cut(s) 226
FaeI CATG 5 cut(s) 17, 187, 220, 280, 367
FaiI YATR 5 cut(s) 15, 185, 218, 278, 365
FaqI GGGAC 1 cut(s) 132
FatI CATG 5 cut(s) 13, 183, 216, 276, 363
FauI CCCGC 2 cut(s) 98, 108
Fnu4HI GCNGC 3 cut(s) 38, 67, 70
FokI GGATG 2 cut(s) 166, 281
Fsp4HI GCNGC 3 cut(s) 38, 67, 70
GlaI GCGC 2 cut(s) 50, 244
GluI GCNGC 3 cut(s) 38, 67, 70
HaeIII GGCC 1 cut(s) 349
HapII CCGG 1 cut(s) 73
HhaI GCGC 2 cut(s) 51, 245
Hin1II CATG 5 cut(s) 17, 187, 220, 280, 367
Hin6I GCGC 2 cut(s) 49, 243
HinP1I GCGC 2 cut(s) 49, 243
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 4 cut(s) 8, 14, 142, 151
HpyAV CCTTC 3 cut(s) 217, 268, 336
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 5 cut(s) 17, 187, 220, 280, 367
HspAI GCGC 2 cut(s) 49, 243
Kzo9I GATC 5 cut(s) 10, 16, 147, 338, 343
LpnPI CCDG 8 cut(s) 26, 86, 136, 225, 278, 287, 321, 331
Lsp1109I GCAGC 1 cut(s) 81
MalI GATC 5 cut(s) 12, 18, 149, 340, 345
MboI GATC 5 cut(s) 10, 16, 147, 338, 343
MboII GAAGA 1 cut(s) 202
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 7 cut(s) 39, 69, 104, 138, 150, 261, 360
MseI TTAA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 1 cut(s) 73
MvnI CGCG 2 cut(s) 51, 245
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 5 cut(s) 10, 16, 147, 338, 343
NlaIII CATG 5 cut(s) 17, 187, 220, 280, 367
NmeAIII GCCGAG 1 cut(s) 75
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 13
PkrI GCNGC 3 cut(s) 39, 68, 71
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
PspPI GGNCC 2 cut(s) 101, 226
PspPPI RGGWCCY 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
Rsr2I CGGWCCG 1 cut(s) 101
RsrII CGGWCCG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 3 cut(s) 38, 67, 70
Sau3AI GATC 5 cut(s) 10, 16, 147, 338, 343
Sau96I GGNCC 2 cut(s) 101, 226
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 1 cut(s) 212
SetI ASST 8 cut(s) 161, 171, 198, 231, 241, 251, 260, 323
SinI GGWCC 2 cut(s) 101, 226
SmlI CTYRAG 3 cut(s) 6, 140, 197
SmoI CTYRAG 3 cut(s) 6, 140, 197
SsiI CCGC 8 cut(s) 25, 38, 51, 64, 67, 91, 99, 115
TaqI TCGA 1 cut(s) 352
TaqII GACCGA 1 cut(s) 118
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 40, 69
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 306
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 3 cut(s) 236, 265, 352
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 2 cut(s) 101, 226
XceI RCATGY 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.