Rw2G036650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013138
Physical Location & Seq
Reverse (-)
60371426 .. 60371752
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036650.1

Sequence Viewer

Length: 327 bp
ATGTCACGTTACCGGATCTCCCTCCGTCGCCGGAAGCTCCCAATGGCCCGCCTCGGAGGCAAGAAGCCGCCACGAGGCGTCATGCTAGTTAGGATGTTCAGAAAAATCAGACTGAGGTGGCTGAAGCTGAAGTATTTCTGCATGTTGAAGAAGCTCAAGGAGTCTTACAAGAACATGGTGAAGGACCTCATGGAAGCCGGAGCGAGCTTTGAAACGTTTCAGAAGAAGATATTCATGGAGGCCACGTTTGCAATTCCGATGGGAGTTTCTCTTTCTAGCTACCCCTCTATTCCCGGGTCGGATCGTCCCAGAACCCTTTATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.77

Weight (kDa)

11.08

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 68
AclI AACGTT 1 cut(s) 215
AclWI GGATC 2 cut(s) 23, 309
AcuI CTGAAG 2 cut(s) 143, 149
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 148, 212
AluBI AGCT 5 cut(s) 37, 127, 154, 207, 279
AluI AGCT 5 cut(s) 37, 127, 154, 207, 279
AlwI GGATC 2 cut(s) 23, 309
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 2 cut(s) 45, 240
Asp700I GAANNNNTTC 3 cut(s) 134, 216, 230
AspS9I GGNCC 2 cut(s) 46, 184
AsuC2I CCSGG 2 cut(s) 294, 295
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 184
BauI CACGAG 1 cut(s) 72
BccI CCATC 1 cut(s) 253
BcnI CCSGG 2 cut(s) 294, 295
BfaI CTAG 3 cut(s) 86, 276, 325
BglI GCCNNNNNGGC 1 cut(s) 57
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 294, 295
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 46, 184
BmrFI CCNGG 2 cut(s) 294, 295
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 294, 295
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 52, 293
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 3 cut(s) 32, 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 52, 293
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 104
BshFI GGCC 2 cut(s) 47, 242
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 4 cut(s) 13, 31, 198, 294
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 2 cut(s) 47, 242
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 2 cut(s) 15, 301
BspACI CCGC 2 cut(s) 49, 68
BspANI GGCC 2 cut(s) 47, 242
BspCNI CTCAG 1 cut(s) 105
BspPI GGATC 2 cut(s) 23, 309
BssECI CCNNGG 2 cut(s) 52, 293
BssMI GATC 2 cut(s) 15, 301
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 49, 205
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 2 cut(s) 18, 304
BstMBI GATC 2 cut(s) 15, 301
BstMWI GCNNNNNNNGC 2 cut(s) 57, 248
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 292, 293
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 2 cut(s) 47, 242
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 49, 205
Cfr13I GGNCC 2 cut(s) 46, 184
Cfr9I CCCGGG 1 cut(s) 293
CseI GACGC 1 cut(s) 67
CviAII CATG 5 cut(s) 82, 142, 175, 190, 235
DdeI CTNAG 1 cut(s) 113
DpnI GATC 2 cut(s) 17, 303
DpnII GATC 2 cut(s) 15, 301
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 2 cut(s) 143, 149
Eco88I CYCGRG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 184
FaeI CATG 5 cut(s) 85, 145, 178, 193, 238
FaiI YATR 6 cut(s) 83, 143, 176, 191, 236, 321
FaqI GGGAC 1 cut(s) 291
FatI CATG 5 cut(s) 81, 141, 174, 189, 234
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 3 cut(s) 86, 276, 325
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 2 cut(s) 47, 242
HapII CCGG 4 cut(s) 13, 31, 198, 294
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 5 cut(s) 85, 145, 178, 193, 238
HinfI GANTC 1 cut(s) 161
HpaII CCGG 4 cut(s) 13, 31, 198, 294
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 6 cut(s) 56, 101, 110, 222, 258, 301
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 3 cut(s) 7, 215, 245
HpyCH4V TGCA 2 cut(s) 141, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 248
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 3 cut(s) 7, 215, 245
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 5 cut(s) 85, 145, 178, 193, 238
Kzo9I GATC 2 cut(s) 15, 301
LmnI GCTCC 2 cut(s) 42, 200
LpnPI CCDG 5 cut(s) 26, 44, 211, 307, 322
MaeI CTAG 3 cut(s) 86, 276, 325
MaeII ACGT 3 cut(s) 7, 215, 245
MaeIII GTNAC 2 cut(s) 3, 8
MalI GATC 2 cut(s) 17, 303
MboI GATC 2 cut(s) 15, 301
MboII GAAGA 3 cut(s) 160, 235, 238
MflI RGATCY 1 cut(s) 15
MluCI AATT 1 cut(s) 252
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 8 cut(s) 32, 50, 62, 68, 108, 197, 232, 295
MroXI GAANNNNTTC 3 cut(s) 134, 216, 230
MspI CCGG 4 cut(s) 13, 31, 198, 294
MspR9I CCNGG 2 cut(s) 294, 295
MwoI GCNNNNNNNGC 2 cut(s) 57, 248
NciI CCSGG 2 cut(s) 294, 295
NdeII GATC 2 cut(s) 15, 301
NlaIII CATG 5 cut(s) 85, 145, 178, 193, 238
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 145
PdmI GAANNNNTTC 3 cut(s) 134, 216, 230
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 184
PspPI GGNCC 2 cut(s) 46, 184
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 1 cut(s) 15
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 2 cut(s) 15, 301
Sau96I GGNCC 2 cut(s) 46, 184
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 294, 295
SinI GGWCC 1 cut(s) 184
SmaI CCCGGG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 252
SsiI CCGC 2 cut(s) 49, 68
SspMI CTAG 3 cut(s) 86, 276, 325
StyD4I CCNGG 2 cut(s) 292, 293
TaiI ACGT 3 cut(s) 10, 218, 248
TasI AATT 1 cut(s) 252
TauI GCSGC 1 cut(s) 70
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 14
TspMI CCCGGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 184
XceI RCATGY 1 cut(s) 145
XmaI CCCGGG 1 cut(s) 293
XmnI GAANNNNTTC 3 cut(s) 134, 216, 230
XspI CTAG 3 cut(s) 86, 276, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.