MD09G1180800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013138
Physical Location & Seq
Forward (+)
15515476 .. 15515841
366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1180800.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGCTCAAGATCATGAACTCCACCGCCAAAGCCAGCCGCTTATACCACGCGGGTTCCCCATCCGGCGCCGGAAACTCCCTTTGGTCCGTCTTGGTGGGCCAAAGCCGAGGCCAGGCGTTGTGTTTGCTAGAATGCTTAAGAAGATCAGACTAAGGTGGCTGAAACTTCACTACTTGTGCATATTGAAGAAGCTCAAGAAGTCTTACAGGAACACGGTCAAGGACCTCATGGAAGCTGGGGCGAGCTTGGAGATCTTCCACCAGAGGGTTTTCATGGAGAGTACATTTGCTATTCCAATGGGAGTTTCTCTCTCTAGCTACCCTTCTGTTGCTGGATCAGATCGGCCTCGAACCCTTTTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.04

Weight (kDa)

11.35

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AccII CGCG 1 cut(s) 51
AciI CCGC 3 cut(s) 25, 38, 51
AclWI GGATC 1 cut(s) 343
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 113, 265
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 289, 321
AluBI AGCT 4 cut(s) 193, 236, 246, 318
AluI AGCT 4 cut(s) 193, 236, 246, 318
AlwI GGATC 1 cut(s) 343
AoxI GGCC 3 cut(s) 98, 110, 344
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 3 cut(s) 85, 98, 223
AvaII GGWCC 2 cut(s) 85, 223
BanI GGYRCC 1 cut(s) 66
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 114
BfaI CTAG 2 cut(s) 129, 315
BfoI RGCGCY 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 137
BglII AGATCT 1 cut(s) 252
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 2 cut(s) 85, 223
BmgT120I GGNCC 3 cut(s) 85, 98, 223
BmiI GGNNCC 2 cut(s) 56, 68
BmrFI CCNGG 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 265
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 113, 265
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 100, 112, 346
BshNI GGYRCC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 64, 70
BslI CCNNNNNNNGG 2 cut(s) 113, 265
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 3 cut(s) 100, 112, 346
Bsp143I GATC 5 cut(s) 10, 144, 252, 335, 340
BspACI CCGC 3 cut(s) 25, 38, 51
BspANI GGCC 3 cut(s) 100, 112, 346
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 56, 68
BspPI GGATC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 5 cut(s) 10, 144, 252, 335, 340
BssNI GRCGYC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 67
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 35, 244
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 5 cut(s) 13, 147, 255, 338, 343
BstMBI GATC 5 cut(s) 10, 144, 252, 335, 340
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstUI CGCG 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuRI GGCC 3 cut(s) 100, 112, 346
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 35, 244
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 85, 98, 223
Csp6I GTAC 1 cut(s) 282
CviAII CATG 4 cut(s) 14, 229, 274, 361
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 1 cut(s) 68
DpnI GATC 5 cut(s) 12, 146, 254, 337, 342
DpnII GATC 5 cut(s) 10, 144, 252, 335, 340
Eco47I GGWCC 2 cut(s) 85, 223
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
FaeI CATG 4 cut(s) 17, 232, 277, 364
FaiI YATR 6 cut(s) 15, 44, 182, 230, 275, 362
FatI CATG 4 cut(s) 13, 228, 273, 360
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 2 cut(s) 129, 315
GlaI GCGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 38
GsaI CCCAGC 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 3 cut(s) 100, 112, 346
HapII CCGG 2 cut(s) 64, 70
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 4 cut(s) 17, 232, 277, 364
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HpaII CCGG 2 cut(s) 64, 70
Hpy188I TCNGA 2 cut(s) 149, 340
Hpy188III TCNNGA 3 cut(s) 8, 14, 196
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 4 cut(s) 17, 232, 277, 364
HspAI GCGC 1 cut(s) 67
KasI GGCGCC 1 cut(s) 66
Kzo9I GATC 5 cut(s) 10, 144, 252, 335, 340
LpnPI CCDG 9 cut(s) 47, 77, 83, 99, 126, 193, 222, 275, 318
MaeI CTAG 2 cut(s) 129, 315
MalI GATC 5 cut(s) 12, 146, 254, 337, 342
MboI GATC 5 cut(s) 10, 144, 252, 335, 340
MboII GAAGA 3 cut(s) 154, 199, 247
MflI RGATCY 1 cut(s) 252
Mly113I GGCGCC 1 cut(s) 67
MnlI CCTC 4 cut(s) 102, 236, 258, 357
MseI TTAA 1 cut(s) 138
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 2 cut(s) 64, 70
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 51
NarI GGCGCC 1 cut(s) 67
NdeII GATC 5 cut(s) 10, 144, 252, 335, 340
NlaIII CATG 4 cut(s) 17, 232, 277, 364
NlaIV GGNNCC 2 cut(s) 56, 68
NmeAIII GCCGAG 1 cut(s) 132
PagI TCATGA 1 cut(s) 13
PctI GAATGC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 39
PluTI GGCGCC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 56, 68
PspPI GGNCC 3 cut(s) 85, 98, 223
PspPPI RGGWCCY 1 cut(s) 223
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 5 cut(s) 10, 144, 252, 335, 340
Sau96I GGNCC 3 cut(s) 85, 98, 223
ScrFI CCNGG 1 cut(s) 114
SetI ASST 6 cut(s) 158, 195, 228, 238, 248, 320
SfoI GGCGCC 1 cut(s) 68
SinI GGWCC 2 cut(s) 85, 223
SmlI CTYRAG 3 cut(s) 6, 137, 194
SmoI CTYRAG 3 cut(s) 6, 137, 194
SsiI CCGC 3 cut(s) 25, 38, 51
SspDI GGCGCC 1 cut(s) 66
SspMI CTAG 2 cut(s) 129, 315
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 349
TatI WGTACW 1 cut(s) 281
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TspDTI ATGAA 3 cut(s) 30, 262, 349
TspGWI ACGGA 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 85, 223
XspI CTAG 2 cut(s) 129, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.