Rh2DG470400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013138
Physical Location & Seq
Reverse (-)
68174871 .. 68175257
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG470400.1

Sequence Viewer

Length: 387 bp
ATGGCTCAAAATCGTGAGCTCGATCAGCAAACCCGTCCTCTAGCAAACCCAGATAGCCGGATGTCACGTTACCGGATCTCCCTCCGTCGCCGGAAGCTCCCAATGGCCCGCCTCGGAGGCAAGAAACCGCCACGAGGCGTCATGCTAGTTAGGATGTTCAGAAAAATCAGACTGAGGTGGCTGAAGCTGAAGTATTTCTGCATGTTGAAGAAGCTCAAGGAGTCTTACAAGAACATGGTGAAGGACCTCATGGAAGCCGGAGCGAGCTTTGAAACGTTTCAGCAGAAGATATTCATGGAGGCCACGTTTGCAATTCCGATGGGAGTTTCTCTTTCTAGCTACCCCTCTATTCCCGGGTCGGATCGGCCCAGAACCCTTTACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.09

Weight (kDa)

11.02

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 109, 128
AclI AACGTT 1 cut(s) 275
AclWI GGATC 2 cut(s) 83, 369
AcuI CTGAAG 2 cut(s) 203, 209
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 208, 272
AluBI AGCT 6 cut(s) 19, 97, 187, 214, 267, 339
AluI AGCT 6 cut(s) 19, 97, 187, 214, 267, 339
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 2 cut(s) 83, 369
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 3 cut(s) 105, 300, 365
Asp700I GAANNNNTTC 3 cut(s) 194, 276, 290
AspS9I GGNCC 3 cut(s) 106, 244, 366
AsuC2I CCSGG 2 cut(s) 354, 355
AsuHPI GGTGA 1 cut(s) 250
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 1 cut(s) 313
BcnI CCSGG 2 cut(s) 354, 355
BfaI CTAG 4 cut(s) 41, 146, 336, 385
BglI GCCNNNNNGGC 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 354, 355
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 3 cut(s) 106, 244, 366
BmrFI CCNGG 2 cut(s) 354, 355
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 2 cut(s) 354, 355
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 112, 353
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 112, 353
BseGI GGATG 2 cut(s) 66, 159
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 164
BshFI GGCC 3 cut(s) 107, 302, 367
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 5 cut(s) 58, 73, 91, 258, 354
BslI CCNNNNNNNGG 1 cut(s) 134
BsnI GGCC 3 cut(s) 107, 302, 367
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 22, 75, 361
BspACI CCGC 2 cut(s) 109, 128
BspANI GGCC 3 cut(s) 107, 302, 367
BspCNI CTCAG 1 cut(s) 165
BspPI GGATC 2 cut(s) 83, 369
BssECI CCNNGG 2 cut(s) 112, 353
BssMI GATC 3 cut(s) 22, 75, 361
BssNI GRCGYC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 109, 265
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 66, 159
BstKTI GATC 3 cut(s) 25, 78, 364
BstMBI GATC 3 cut(s) 22, 75, 361
BstMWI GCNNNNNNNGC 3 cut(s) 25, 117, 308
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 352, 353
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 3 cut(s) 107, 302, 367
BtsCI GGATG 2 cut(s) 66, 159
Cac8I GCNNGC 2 cut(s) 109, 265
Cfr13I GGNCC 3 cut(s) 106, 244, 366
Cfr9I CCCGGG 1 cut(s) 353
CseI GACGC 1 cut(s) 127
CviAII CATG 5 cut(s) 142, 202, 235, 250, 295
DdeI CTNAG 1 cut(s) 173
DpnI GATC 3 cut(s) 24, 77, 363
DpnII GATC 3 cut(s) 22, 75, 361
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 203, 209
Eco88I CYCGRG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 5 cut(s) 145, 205, 238, 253, 298
FaiI YATR 5 cut(s) 143, 203, 236, 251, 296
FatI CATG 5 cut(s) 141, 201, 234, 249, 294
FauI CCCGC 1 cut(s) 116
FokI GGATG 2 cut(s) 73, 166
FriOI GRGCYC 1 cut(s) 21
FspBI CTAG 4 cut(s) 41, 146, 336, 385
HaeIII GGCC 3 cut(s) 107, 302, 367
HapII CCGG 5 cut(s) 58, 73, 91, 258, 354
HgaI GACGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 5 cut(s) 145, 205, 238, 253, 298
HinfI GANTC 1 cut(s) 221
HpaII CCGG 5 cut(s) 58, 73, 91, 258, 354
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 5 cut(s) 116, 161, 170, 318, 361
Hpy188III TCNNGA 1 cut(s) 14
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 3 cut(s) 67, 275, 305
HpyCH4V TGCA 2 cut(s) 201, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 117, 308
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 3 cut(s) 67, 275, 305
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 5 cut(s) 145, 205, 238, 253, 298
Kzo9I GATC 3 cut(s) 22, 75, 361
LmnI GCTCC 2 cut(s) 102, 260
LpnPI CCDG 7 cut(s) 63, 71, 86, 104, 271, 367, 382
MaeI CTAG 4 cut(s) 41, 146, 336, 385
MaeII ACGT 3 cut(s) 67, 275, 305
MaeIII GTNAC 2 cut(s) 63, 68
MalI GATC 3 cut(s) 24, 77, 363
MboI GATC 3 cut(s) 22, 75, 361
MboII GAAGA 2 cut(s) 220, 298
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 312
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 9 cut(s) 48, 92, 110, 122, 128, 168, 257, 292, 355
MroXI GAANNNNTTC 3 cut(s) 194, 276, 290
MspI CCGG 5 cut(s) 58, 73, 91, 258, 354
MspR9I CCNGG 2 cut(s) 354, 355
MwoI GCNNNNNNNGC 3 cut(s) 25, 117, 308
NciI CCSGG 2 cut(s) 354, 355
NdeII GATC 3 cut(s) 22, 75, 361
NlaIII CATG 5 cut(s) 145, 205, 238, 253, 298
NmuCI GTSAC 1 cut(s) 63
NspI RCATGY 1 cut(s) 205
PdmI GAANNNNTTC 3 cut(s) 194, 276, 290
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 21
Psp1406I AACGTT 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 244
PspPI GGNCC 3 cut(s) 106, 244, 366
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 75
SacI GAGCTC 1 cut(s) 21
Sau3AI GATC 3 cut(s) 22, 75, 361
Sau96I GGNCC 3 cut(s) 106, 244, 366
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 354, 355
SduI GDGCHC 1 cut(s) 21
SinI GGWCC 1 cut(s) 244
SmaI CCCGGG 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 312
SsiI CCGC 2 cut(s) 109, 128
SspMI CTAG 4 cut(s) 41, 146, 336, 385
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 352, 353
TaiI ACGT 3 cut(s) 70, 278, 308
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 312
TseFI GTSAC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 74
TspMI CCCGGG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 244
XceI RCATGY 1 cut(s) 205
XmaI CCCGGG 1 cut(s) 353
XmnI GAANNNNTTC 3 cut(s) 194, 276, 290
XspI CTAG 4 cut(s) 41, 146, 336, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.