FvH4_6g34980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013138
Physical Location & Seq
Reverse (-)
27650341 .. 27651060
720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34980.t1

Sequence Viewer

Length: 387 bp
ATGGCTCAAAATCGTGAGCTCGATCAGCAAACCCGTCCTCTAACAAACCCAGATCGCCGGATGTCACGTTACGGGATCCCTCTCCGTCGCCGGAAGCTCCCGATGGCCCGCCTCGGAGGCAAGAAGCCGCCGCGAGCCGTCATGCTAGTTAGGATGTTCAGAAAAATCAGACTGAGGTGGCTGAAGCTCAAGTACCTCTGCATGTTGAAGAAGCTCAAGGAGTCTTACAAGAACATGGTGAAGGACCTCATGGAAGCCGGTGCGAGCATCGAAACGTTTCAGCAGAGGATCTTCATGGAGACTACGTTTGCAATTCCGATGGGAGTTTCTCTTTCTAGCTACCCCTCGATTCCCGGATCGGATCGCCCCAGAACCCTTTACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

15.11

Weight (kDa)

11.14

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 133
AciI CCGC 3 cut(s) 109, 128, 131
AclI AACGTT 1 cut(s) 275
AclWI GGATC 5 cut(s) 70, 83, 296, 364, 369
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 5 cut(s) 19, 97, 187, 214, 339
AluI AGCT 5 cut(s) 19, 97, 187, 214, 339
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 5 cut(s) 70, 83, 296, 364, 369
AoxI GGCC 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 106, 244
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 244
BamHI GGATCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 21
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 2 cut(s) 97, 313
BceAI ACGGC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 3 cut(s) 146, 336, 385
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 2 cut(s) 128, 131
BlsI GCNGC 2 cut(s) 129, 132
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 106, 244
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 173, 200
BpuMI CCSGG 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bse118I RCCGGY 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 2 cut(s) 66, 159
BseMII CTCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 4 cut(s) 58, 91, 258, 354
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 6 cut(s) 22, 52, 75, 288, 356, 361
BspACI CCGC 3 cut(s) 109, 128, 131
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 77
BspPI GGATC 5 cut(s) 70, 83, 296, 364, 369
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 6 cut(s) 22, 52, 75, 288, 356, 361
BstC8I GCNNGC 3 cut(s) 109, 135, 265
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 66, 159
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 6 cut(s) 25, 55, 78, 291, 359, 364
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 6 cut(s) 22, 52, 75, 288, 356, 361
BstMWI GCNNNNNNNGC 2 cut(s) 25, 117
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 352
BstUI CGCG 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 75, 288
BstYI RGATCY 2 cut(s) 75, 288
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 66, 159
Cac8I GCNNGC 3 cut(s) 109, 135, 265
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 106, 244
Csp6I GTAC 1 cut(s) 193
CviAII CATG 5 cut(s) 142, 202, 235, 250, 295
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 173
DpnI GATC 6 cut(s) 24, 54, 77, 290, 358, 363
DpnII GATC 6 cut(s) 22, 52, 75, 288, 356, 361
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 5 cut(s) 145, 205, 238, 253, 298
FaiI YATR 5 cut(s) 143, 203, 236, 251, 296
FatI CATG 5 cut(s) 141, 201, 234, 249, 294
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 2 cut(s) 128, 131
FokI GGATG 2 cut(s) 73, 166
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 128, 131
FspBI CTAG 3 cut(s) 146, 336, 385
GluI GCNGC 2 cut(s) 128, 131
HaeIII GGCC 1 cut(s) 107
HapII CCGG 4 cut(s) 58, 91, 258, 354
Hin1II CATG 5 cut(s) 145, 205, 238, 253, 298
HinfI GANTC 2 cut(s) 221, 349
HpaII CCGG 4 cut(s) 58, 91, 258, 354
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 5 cut(s) 116, 161, 170, 318, 361
Hpy188III TCNNGA 2 cut(s) 14, 100
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 3 cut(s) 67, 275, 305
HpyCH4V TGCA 2 cut(s) 201, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 117
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 3 cut(s) 67, 275, 305
Hsp92II CATG 5 cut(s) 145, 205, 238, 253, 298
Kzo9I GATC 6 cut(s) 22, 52, 75, 288, 356, 361
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 6 cut(s) 63, 71, 104, 271, 367, 382
LweI GCATC 1 cut(s) 276
MaeI CTAG 3 cut(s) 146, 336, 385
MaeII ACGT 3 cut(s) 67, 275, 305
MaeIII GTNAC 2 cut(s) 63, 68
MalI GATC 6 cut(s) 24, 54, 77, 290, 358, 363
MboI GATC 6 cut(s) 22, 52, 75, 288, 356, 361
MboII GAAGA 2 cut(s) 220, 283
MflI RGATCY 2 cut(s) 75, 288
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 312
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 9 cut(s) 48, 90, 110, 122, 168, 206, 257, 279, 355
MroXI GAANNNNTTC 1 cut(s) 276
MspI CCGG 4 cut(s) 58, 91, 258, 354
MspR9I CCNGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 25, 117
NciI CCSGG 1 cut(s) 354
NdeII GATC 6 cut(s) 22, 52, 75, 288, 356, 361
NlaIII CATG 5 cut(s) 145, 205, 238, 253, 298
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 63
NspI RCATGY 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 349
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 2 cut(s) 129, 132
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 21
Psp1406I AACGTT 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 2 cut(s) 106, 244
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 2 cut(s) 75, 288
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 21
SatI GCNGC 2 cut(s) 128, 131
Sau3AI GATC 6 cut(s) 22, 52, 75, 288, 356, 361
Sau96I GGNCC 2 cut(s) 106, 244
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 2 cut(s) 188, 215
SmoI CTYRAG 2 cut(s) 188, 215
Sse9I AATT 1 cut(s) 312
SsiI CCGC 3 cut(s) 109, 128, 131
SspMI CTAG 3 cut(s) 146, 336, 385
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 352
TaiI ACGT 3 cut(s) 70, 278, 308
TaqI TCGA 3 cut(s) 21, 270, 347
TasI AATT 1 cut(s) 312
TauI GCSGC 2 cut(s) 130, 133
TfiI GAWTC 1 cut(s) 349
TseFI GTSAC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 244
XceI RCATGY 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 3 cut(s) 146, 336, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.