MD17G1166900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013138
Physical Location & Seq
Forward (+)
16570759 .. 16571130
372 bp
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UTR
Exon/CDS
Intron
MD17G1166900.v1.1.491

Sequence Viewer

Length: 372 bp
ATGGCTCAAGATCATGATCTCCAACGCCAAAGCCAGCCGCTTATAGGACGCGGGTTCCCCATCCGGCGTCGGAAACTTCCTATGGTCCGTCTCTGCGGGCCAAACCCGAGGCGAGGGGTTCTGTTTGCTAGAATGCTTAAGAAGATCAGACTAAGGTGGCTGAAACTTCACTACTTGTGCATATTGAAGAAGCTCAAGGAGTCGTACAGAAACATGGTCAAGGATCTCATGGAAGCTGGGGCGAGCTTGGACACCTTCCACCAGAGGGTTTTCATGGAGAGTACATTTGCTATTCCAATGGGAGTTTCTCTCTCTAGCTACCCTTCTGTTGCTGGATCAGATCGGCCTCGAACTCTTTTCATGCAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.36

Weight (kDa)

11.13

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AciI CCGC 3 cut(s) 38, 51, 96
AclWI GGATC 2 cut(s) 231, 343
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 2 cut(s) 206, 283
AfiI CCNNNNNNNGG 3 cut(s) 44, 113, 265
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AluBI AGCT 4 cut(s) 193, 236, 246, 318
AluI AGCT 4 cut(s) 193, 236, 246, 318
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 231, 343
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 2 cut(s) 98, 344
AspS9I GGNCC 2 cut(s) 85, 98
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 1 cut(s) 85
BccI CCATC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 129, 315
BfrI CTTAAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 85, 98
BmiI GGNNCC 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BpuEI CTTGAG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 113, 265
Bse8I GATNNNNATC 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 60
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 3 cut(s) 44, 113, 265
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 100, 346
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 44, 113, 265
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 2 cut(s) 100, 346
BsoBI CYCGRG 1 cut(s) 106
Bsp143I GATC 6 cut(s) 10, 16, 144, 223, 335, 340
BspACI CCGC 3 cut(s) 38, 51, 96
BspANI GGCC 2 cut(s) 100, 346
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 2 cut(s) 231, 343
BspTI CTTAAG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 6 cut(s) 10, 16, 144, 223, 335, 340
BssNI GRCGYC 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 67
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 35, 98, 244
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 6 cut(s) 13, 19, 147, 226, 338, 343
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 6 cut(s) 10, 16, 144, 223, 335, 340
BstUI CGCG 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 2 cut(s) 100, 346
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 3 cut(s) 35, 98, 244
CciI TCATGA 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 85, 98
CseI GACGC 2 cut(s) 56, 57
Csp6I GTAC 2 cut(s) 205, 282
CviAII CATG 5 cut(s) 14, 214, 229, 274, 361
CviQI GTAC 2 cut(s) 205, 282
DdeI CTNAG 1 cut(s) 152
DpnI GATC 6 cut(s) 12, 18, 146, 225, 337, 342
DpnII GATC 6 cut(s) 10, 16, 144, 223, 335, 340
Eco47I GGWCC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 5 cut(s) 17, 217, 232, 277, 364
FaiI YATR 8 cut(s) 15, 44, 83, 182, 215, 230, 275, 362
FatI CATG 5 cut(s) 13, 213, 228, 273, 360
FauI CCCGC 2 cut(s) 44, 89
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 2 cut(s) 129, 315
GluI GCNGC 1 cut(s) 38
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 100, 346
HapII CCGG 1 cut(s) 64
HgaI GACGC 2 cut(s) 56, 57
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 5 cut(s) 17, 217, 232, 277, 364
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 64
Hpy188I TCNGA 3 cut(s) 72, 149, 340
Hpy188III TCNNGA 2 cut(s) 8, 14
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 265, 333
HpyCH4V TGCA 2 cut(s) 180, 364
HpyF3I CTNAG 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 5 cut(s) 17, 217, 232, 277, 364
Kzo9I GATC 6 cut(s) 10, 16, 144, 223, 335, 340
LpnPI CCDG 5 cut(s) 47, 77, 222, 275, 318
MaeI CTAG 2 cut(s) 129, 315
MalI GATC 6 cut(s) 12, 18, 146, 225, 337, 342
MboI GATC 6 cut(s) 10, 16, 144, 223, 335, 340
MboII GAAGA 2 cut(s) 154, 199
MflI RGATCY 1 cut(s) 223
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 2 cut(s) 46, 50
MnlI CCTC 4 cut(s) 102, 107, 258, 357
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 365
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 138
MvnI CGCG 1 cut(s) 51
NdeII GATC 6 cut(s) 10, 16, 144, 223, 335, 340
NlaIII CATG 5 cut(s) 17, 217, 232, 277, 364
NlaIV GGNNCC 1 cut(s) 56
PagI TCATGA 1 cut(s) 13
PctI GAATGC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 85, 98
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 2 cut(s) 206, 283
RsaNI GTAC 2 cut(s) 205, 282
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 6 cut(s) 10, 16, 144, 223, 335, 340
Sau96I GGNCC 2 cut(s) 85, 98
SchI GAGTC 1 cut(s) 209
SetI ASST 6 cut(s) 158, 195, 238, 248, 257, 320
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 3 cut(s) 6, 137, 194
SmoI CTYRAG 3 cut(s) 6, 137, 194
SsiI CCGC 3 cut(s) 38, 51, 96
SspMI CTAG 2 cut(s) 129, 315
TaqI TCGA 1 cut(s) 349
TatI WGTACW 1 cut(s) 281
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 262, 349
TspGWI ACGGA 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 85
XspI CTAG 2 cut(s) 129, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.