RLG00000020180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013138
Physical Location & Seq
Reverse (-)
62152552 .. 62152938
387 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020180

Sequence Viewer

Length: 387 bp
ATGGCTCAAAATCGTGAGCTCGATCAGCAAACCCGTCCTCTAGCAAACCCAGATAGCCGGATGTCACGTTACCGGGTCTCCCTCCGTCGCCGGAAGCTCCCAACGGCCCGCCTCGGAGGCAAGAAGCCGCCACGAGGCGTCATGCTAGTTAGGATGTTCAGAAAAATCAGACTGAGGTGGCTGAAGCTGAAGTACTTCTGCATGTTGAAGAAGCTCAAGGAGTCTTACAAGAACATGGTGAAGGACCTCATGGAAGCCGGAGCGAGCTTTGAAACGTTTCAGCAGAAGATATTCATGGAGACCACGTTTGCAATTCCTATGGGAGTTTCTCTTTCTAGCTACCCCTCTATTCCCGGATCGGATCGGCCCAGAACCCTTTACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

15.08

Weight (kDa)

11.02

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54120 AT3G14060
fragaria_vesca FvH4_6g34980
malus_domestica MD09G1180800.v1.1 MD17G1166900.v1.1
prunus_persica Prupe.3G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146001
rosa_laevigata RLG00000020180
rosa_multiflora Rmu_sc0002936.1_g000004 Rmu_sc0014682.1_g000006
rosa_roxburghii Rroxscaffold_152G00434830 Rroxscaffold_2G00100330
rosa_rugosa Rorug02G0393600
rosa_samantha Rh2AG448700 Rh2BG461200 Rh2CG435700 Rh2DG470400
rosa_wichuraiana Rw2G036650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 109, 128
AclI AACGTT 1 cut(s) 275
AclWI GGATC 2 cut(s) 364, 369
AcuI CTGAAG 2 cut(s) 203, 209
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 208, 272
AluBI AGCT 6 cut(s) 19, 97, 187, 214, 267, 339
AluI AGCT 6 cut(s) 19, 97, 187, 214, 267, 339
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 82, 293
AlwI GGATC 2 cut(s) 364, 369
AoxI GGCC 2 cut(s) 105, 365
Asp700I GAANNNNTTC 3 cut(s) 194, 276, 290
AspS9I GGNCC 3 cut(s) 106, 244, 366
AsuC2I CCSGG 2 cut(s) 74, 354
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 21
BarI GAAGNNNNNNTAC 2 cut(s) 176, 208
BauI CACGAG 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 2 cut(s) 74, 354
BcoDI GTCTC 2 cut(s) 82, 293
BfaI CTAG 4 cut(s) 41, 146, 336, 385
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 74, 354
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 3 cut(s) 106, 244, 366
BmrFI CCNGG 2 cut(s) 74, 354
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 2 cut(s) 74, 354
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 82, 293
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 2 cut(s) 66, 159
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 107, 367
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 5 cut(s) 58, 73, 91, 258, 354
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 82, 293
BsnI GGCC 2 cut(s) 107, 367
Bso31I GGTCTC 2 cut(s) 82, 293
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 22, 356, 361
BspACI CCGC 2 cut(s) 109, 128
BspANI GGCC 2 cut(s) 107, 367
BspCNI CTCAG 1 cut(s) 165
BspPI GGATC 2 cut(s) 364, 369
BspTNI GGTCTC 2 cut(s) 82, 293
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 3 cut(s) 22, 356, 361
BssNI GRCGYC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 109, 265
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 66, 159
BstKTI GATC 3 cut(s) 25, 359, 364
BstMAI GTCTC 2 cut(s) 82, 293
BstMBI GATC 3 cut(s) 22, 356, 361
BstMWI GCNNNNNNNGC 2 cut(s) 25, 117
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 72, 352
BsuRI GGCC 2 cut(s) 107, 367
BtsCI GGATG 2 cut(s) 66, 159
Cac8I GCNNGC 2 cut(s) 109, 265
Cfr13I GGNCC 3 cut(s) 106, 244, 366
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 193
CviAII CATG 5 cut(s) 142, 202, 235, 250, 295
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 173
DpnI GATC 3 cut(s) 24, 358, 363
DpnII GATC 3 cut(s) 22, 356, 361
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 2 cut(s) 82, 293
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 203, 209
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 5 cut(s) 145, 205, 238, 253, 298
FaiI YATR 6 cut(s) 143, 203, 236, 251, 296, 320
FatI CATG 5 cut(s) 141, 201, 234, 249, 294
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 2 cut(s) 73, 166
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 4 cut(s) 41, 146, 336, 385
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 2 cut(s) 107, 367
HapII CCGG 5 cut(s) 58, 73, 91, 258, 354
HgaI GACGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 5 cut(s) 145, 205, 238, 253, 298
HinfI GANTC 1 cut(s) 221
HpaII CCGG 5 cut(s) 58, 73, 91, 258, 354
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 4 cut(s) 116, 161, 170, 361
Hpy188III TCNNGA 1 cut(s) 14
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 3 cut(s) 67, 275, 305
HpyCH4V TGCA 2 cut(s) 201, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 117
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 3 cut(s) 67, 275, 305
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 5 cut(s) 145, 205, 238, 253, 298
Kzo9I GATC 3 cut(s) 22, 356, 361
LmnI GCTCC 2 cut(s) 102, 260
LpnPI CCDG 7 cut(s) 63, 71, 86, 104, 271, 367, 382
MaeI CTAG 4 cut(s) 41, 146, 336, 385
MaeII ACGT 3 cut(s) 67, 275, 305
MaeIII GTNAC 2 cut(s) 63, 68
MalI GATC 3 cut(s) 24, 358, 363
MboI GATC 3 cut(s) 22, 356, 361
MboII GAAGA 2 cut(s) 220, 298
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 312
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 8 cut(s) 48, 92, 110, 122, 128, 168, 257, 355
MroXI GAANNNNTTC 3 cut(s) 194, 276, 290
MspI CCGG 5 cut(s) 58, 73, 91, 258, 354
MspR9I CCNGG 2 cut(s) 74, 354
MwoI GCNNNNNNNGC 2 cut(s) 25, 117
NciI CCSGG 2 cut(s) 74, 354
NdeII GATC 3 cut(s) 22, 356, 361
NlaIII CATG 5 cut(s) 145, 205, 238, 253, 298
NmuCI GTSAC 1 cut(s) 63
NspI RCATGY 1 cut(s) 205
PdmI GAANNNNTTC 3 cut(s) 194, 276, 290
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 21
Psp1406I AACGTT 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 244
PspPI GGNCC 3 cut(s) 106, 244, 366
PspPPI RGGWCCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 21
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 3 cut(s) 22, 356, 361
Sau96I GGNCC 3 cut(s) 106, 244, 366
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 74, 354
SduI GDGCHC 1 cut(s) 21
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 312
SsiI CCGC 2 cut(s) 109, 128
SspMI CTAG 4 cut(s) 41, 146, 336, 385
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 72, 352
TaiI ACGT 3 cut(s) 70, 278, 308
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 312
TatI WGTACW 1 cut(s) 192
TauI GCSGC 1 cut(s) 130
TseFI GTSAC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 244
XceI RCATGY 1 cut(s) 205
XmnI GAANNNNTTC 3 cut(s) 194, 276, 290
XspI CTAG 4 cut(s) 41, 146, 336, 385
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.