Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013965

Physical Location & Seq

Genomic Coordinates Forward (+)

20588397 .. 20589199

Gene Structure 803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGACGAACTACGGGGCGATTCCGACGTCGTCTCATCCATCACCGGCGATAGATCTCGAATACATCTCACGCGCCAAACACCGTATAAAATCCGGTCTAGCTACGCGCCGCCCATGGAAATCAATGTTCGATTTCGAATCAATGACTCTCCCTCACGGTTTCTTCGACGCGATCTCGAGGATCAAAACGAATCTCGGCTATTTCAGAGCTAATTACGCCATCGGAGTTCTCTTCATCCTCTTCCTAAGCCTTCTATATCACCCAACCTCGTTGATCGTGTTATCAATCTTGGTCGTCTTCTGGATCTTTCTCTATTTCCTCCGTGACGAGCCTCTTGTTGTTTTTGGTTATCAGATTGATGATCGGACGGTTCTTATTGGTTTATCGGTTTTGACGGTTGTGATGCTTTTGTTGACTCACGCTACTTCGAATATTCTGGGATCTTTGTTAACCGCCGCCGTGTTGGTTCTGATTCATGCGGCGGTTAGAAGAAGTGATAATTTGTTTCTTGATGAAGAAGCTGCGGCGGTTACTGAAGCTTCAGGGCTGATGTCATACCCTTCGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

189

Amino Acids

21.07

Weight (kDa)

7.02

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	32 - 173	1.9e-49	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0013965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55190 AT3G13710 AT3G13720
malus_domestica	MD02G1076900.v1.1 MD15G1205600.v1.1
prunus_persica	Prupe.7G211500_v2.0.a1
pyrus_communis	pycom02g06150 pycom15g18240
rosa_chinensis	RchiOBHm_Chr2g0093141
rosa_laevigata	RLG00000016372
rosa_roxburghii	Rroxscaffold_2G00148470
rosa_rugosa	Rorug02G0033200
rosa_samantha	Rh2AG078800 Rh2BG080100 Rh2CG082300 Rh2DG077800
rosa_wichuraiana	Rw2G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccII	CGCG	3 cut(s)	72, 106, 170
AciI	CCGC	7 cut(s)	109, 453, 456, 479, 482, 524, 527
AclWI	GGATC	3 cut(s)	188, 311, 448
AcuI	CTGAAG	2 cut(s)	525, 555
AcyI	GRCGYC	1 cut(s)	26
AluBI	AGCT	4 cut(s)	101, 209, 521, 539
AluI	AGCT	4 cut(s)	101, 209, 521, 539
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	188, 311, 448
Ama87I	CYCGRG	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	74, 108
AsuHPI	GGTGA	2 cut(s)	33, 251
AsuII	TTCGAA	2 cut(s)	135, 428
AvaI	CYCGRG	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	2 cut(s)	46, 227
BceAI	ACGGC	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	5 cut(s)	109, 456, 480, 522, 525
BlsI	GCNGC	5 cut(s)	110, 457, 481, 523, 526
BmeT110I	CYCGRG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu14I	TTCGAA	2 cut(s)	135, 428
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	34, 234
BseXI	GCAGC	1 cut(s)	508
Bsh1236I	CGCG	3 cut(s)	72, 106, 170
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	44, 93
BsmAI	GTCTC	1 cut(s)	36
BsmBI	CGTCTC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	175
Bsp119I	TTCGAA	2 cut(s)	135, 428
Bsp143I	GATC	7 cut(s)	52, 171, 180, 273, 303, 361, 440
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	7 cut(s)	109, 453, 456, 479, 482, 524, 527
BspFNI	CGCG	3 cut(s)	72, 106, 170
BspPI	GGATC	3 cut(s)	188, 311, 448
BspT104I	TTCGAA	2 cut(s)	135, 428
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	7 cut(s)	52, 171, 180, 273, 303, 361, 440
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	4 cut(s)	83, 158, 370, 397
Bst6I	CTCTTC	2 cut(s)	236, 245
BstACI	GRCGYC	1 cut(s)	26
BstBI	TTCGAA	2 cut(s)	135, 428
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	34, 234
BstFNI	CGCG	3 cut(s)	72, 106, 170
BstHHI	GCGC	2 cut(s)	74, 108
BstKTI	GATC	7 cut(s)	55, 174, 183, 276, 306, 364, 443
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	7 cut(s)	52, 171, 180, 273, 303, 361, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstUI	CGCG	3 cut(s)	72, 106, 170
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	3 cut(s)	52, 303, 440
BstYI	RGATCY	3 cut(s)	52, 303, 440
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	34, 234
CfoI	GCGC	2 cut(s)	74, 108
Cfr10I	RCCGGY	1 cut(s)	43
CseI	GACGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	114, 476
CviJI	RGCY	8 cut(s)	101, 198, 209, 249, 331, 521, 539, 547
CviKI_1	RGCY	8 cut(s)	101, 198, 209, 249, 331, 521, 539, 547
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	7 cut(s)	54, 173, 182, 275, 305, 363, 442
DpnII	GATC	7 cut(s)	52, 171, 180, 273, 303, 361, 440
Eam1104I	CTCTTC	2 cut(s)	236, 245
EarI	CTCTTC	2 cut(s)	236, 245
Eco130I	CCWWGG	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	525, 555
Eco88I	CYCGRG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	2 cut(s)	117, 479
FaiI	YATR	5 cut(s)	86, 115, 256, 477, 556
FatI	CATG	2 cut(s)	113, 475
Fnu4HI	GCNGC	5 cut(s)	109, 456, 480, 522, 525
FokI	GGATG	2 cut(s)	21, 221
Fsp4HI	GCNGC	5 cut(s)	109, 456, 480, 522, 525
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	2 cut(s)	73, 107
GluI	GCNGC	5 cut(s)	109, 456, 480, 522, 525
HapII	CCGG	2 cut(s)	44, 93
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	74, 108
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	117, 479
Hin6I	GCGC	2 cut(s)	72, 106
HinP1I	GCGC	2 cut(s)	72, 106
HincII	GTYRAC	2 cut(s)	414, 450
HindII	GTYRAC	2 cut(s)	414, 450
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	6 cut(s)	19, 137, 145, 190, 415, 472
HpaI	GTTAAC	1 cut(s)	450
HpaII	CCGG	2 cut(s)	44, 93
HphI	GGTGA	2 cut(s)	33, 251
Hpy166II	GTNNAC	2 cut(s)	414, 450
Hpy188I	TCNGA	6 cut(s)	24, 206, 224, 354, 366, 471
Hpy188III	TCNNGA	4 cut(s)	56, 175, 301, 509
Hpy8I	GTNNAC	2 cut(s)	414, 450
Hpy99I	CGWCG	4 cut(s)	28, 31, 170, 568
HpyAV	CCTTC	2 cut(s)	260, 570
HpyCH4III	ACNGT	4 cut(s)	83, 158, 370, 397
HpyCH4IV	ACGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	117, 479
HspAI	GCGC	2 cut(s)	72, 106
KspAI	GTTAAC	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	52, 171, 180, 273, 303, 361, 440
LpnPI	CCDG	5 cut(s)	57, 106, 286, 422, 528
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	323, 529
MalI	GATC	7 cut(s)	54, 173, 182, 275, 305, 363, 442
MboI	GATC	7 cut(s)	52, 171, 180, 273, 303, 361, 440
MboII	GAAGA	6 cut(s)	154, 223, 232, 289, 501, 527
MflI	RGATCY	3 cut(s)	52, 303, 440
MluCI	AATT	2 cut(s)	211, 499
MlyI	GAGTC	2 cut(s)	139, 409
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	162, 171, 248, 277, 329, 342
MseI	TTAA	1 cut(s)	449
MspI	CCGG	2 cut(s)	44, 93
MvnI	CGCG	3 cut(s)	72, 106, 170
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	7 cut(s)	52, 171, 180, 273, 303, 361, 440
NlaIII	CATG	2 cut(s)	117, 479
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	323
NspV	TTCGAA	2 cut(s)	135, 428
PaeR7I	CTCGAG	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	4 cut(s)	19, 137, 190, 472
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	5 cut(s)	110, 457, 481, 523, 526
PleI	GAGTC	2 cut(s)	139, 409
PpsI	GAGTC	2 cut(s)	139, 409
PsuI	RGATCY	3 cut(s)	52, 303, 440
PsyI	GACNNNGTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	5 cut(s)	109, 456, 480, 522, 525
Sau3AI	GATC	7 cut(s)	52, 171, 180, 273, 303, 361, 440
SchI	GAGTC	2 cut(s)	139, 409
SetI	ASST	6 cut(s)	29, 103, 211, 269, 523, 541
SfaNI	GCATC	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	175
SfuI	TTCGAA	2 cut(s)	135, 428
SgrAI	CRCCGGYG	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	2 cut(s)	211, 499
SsiI	CCGC	7 cut(s)	109, 453, 456, 479, 482, 524, 527
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	4 cut(s)	83, 158, 370, 397
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	6 cut(s)	57, 129, 135, 165, 176, 428
TasI	AATT	2 cut(s)	211, 499
TauI	GCSGC	4 cut(s)	111, 458, 482, 527
TfiI	GAWTC	4 cut(s)	19, 137, 190, 472
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	223, 464, 528
TspGWI	ACGGA	1 cut(s)	311
Tth111I	GACNNNGTC	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	175
XspI	CTAG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.