Prupe.7G211500_v2.0.a1

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013965
Physical Location & Seq
Forward (+)
19325437 .. 19326317
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G211500.1

Sequence Viewer

Length: 606 bp
ATGACAACTTACGGGACTATTCCGACAGAACCCCCTCCTTCCTCGAACCTACATTTTGTTGCACGTGCAAAAGAACAGATCGAGTCGGGGCTTGGCAAACGTAGGCCATGGCTGGAGATGATTGAGCTGCAAGATCTCACACTTCCCACCACCTTCAACCAATCAATCCAAAGAATCAAGTCCAACGTGGTGTTCTTTCGTATGAACTATGCCATAATCATATTGTTCATTCTCTTCCTAAGCCTACTATGGCATCCCATTTCATTGATTGTCTTCATCATCACGATGGTTGCATGGTTGTTTCTGTATTTCCTGCATGACCAACCCTTGATGGTTCTAGGCTACCGGATCGATGAACGATTGGTGACGATTTCTCTATTGTTGGTCACAATCGTCGCACTTTTTCTTACCAGTGCGAAATATCATATCATTGTGGGACTCTCCATTGGCCTTGGGGTTGTGTTGGTTCATGGAGCTTTAAGGGAGCCTGAGGATGTCTTCATTGTGGATGAAGAAGAAGGGCCTGGTCCTGGATCAGGTGGTGCACATGCTTTGAAAGTGCCTCTGAAAAATGCTGCCTCTTCTTCTTATTCTTTGCCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

202

Amino Acids

22.46

Weight (kDa)

6.29

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55190 AT3G13710 AT3G13720
malus_domestica MD02G1076900.v1.1 MD15G1205600.v1.1
prunus_persica Prupe.7G211500_v2.0.a1
pyrus_communis pycom02g06150 pycom15g18240
rosa_chinensis RchiOBHm_Chr2g0093141
rosa_laevigata RLG00000016372
rosa_roxburghii Rroxscaffold_2G00148470
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078800 Rh2BG080100 Rh2CG082300 Rh2DG077800
rosa_wichuraiana Rw2G006770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 356, 541
AcvI CACGTG 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 530, 536
AgsI TTSAA 2 cut(s) 157, 556
AjnI CCWGG 2 cut(s) 523, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 127, 476
AluI AGCT 2 cut(s) 127, 476
Alw21I GWGCWC 1 cut(s) 547
Alw44I GTGCAC 1 cut(s) 543
AlwI GGATC 2 cut(s) 356, 541
AoxI GGCC 3 cut(s) 104, 448, 521
ApaLI GTGCAC 1 cut(s) 543
ApeKI GCWGC 2 cut(s) 127, 575
AspS9I GGNCC 2 cut(s) 521, 527
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 547
BbrPI CACGTG 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 265, 490
Bbv12I GWGCWC 1 cut(s) 547
BbvI GCAGC 2 cut(s) 114, 562
BccI CCATC 2 cut(s) 280, 325
BciT130I CCWGG 2 cut(s) 525, 531
BfaI CTAG 1 cut(s) 338
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 128, 576
BlsI GCNGC 2 cut(s) 129, 577
Bme1390I CCNGG 2 cut(s) 525, 531
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 521, 527
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 2 cut(s) 525, 531
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 265, 490
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 107, 451
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 530, 536
Bse1I ACTGG 1 cut(s) 411
Bse21I CCTNAGG 1 cut(s) 489
BseBI CCWGG 2 cut(s) 525, 531
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 107, 451
BseGI GGATG 3 cut(s) 253, 499, 514
BseLI CCNNNNNNNGG 2 cut(s) 530, 536
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 411
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 2 cut(s) 114, 562
BshFI GGCC 3 cut(s) 106, 450, 523
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 547
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 2 cut(s) 28, 450
BslI CCNNNNNNNGG 2 cut(s) 530, 536
BsmFI GGGAC 2 cut(s) 28, 450
BsnI GGCC 3 cut(s) 106, 450, 523
Bsp1286I GDGCHC 1 cut(s) 547
Bsp143I GATC 4 cut(s) 78, 133, 348, 533
Bsp19I CCATGG 1 cut(s) 107
BspANI GGCC 3 cut(s) 106, 450, 523
BspCNI CTCAG 1 cut(s) 481
BspDI ATCGAT 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 486
BspPI GGATC 2 cut(s) 356, 541
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 107, 451
BssMI GATC 4 cut(s) 78, 133, 348, 533
BssT1I CCWWGG 2 cut(s) 107, 451
Bst2UI CCWGG 2 cut(s) 525, 531
Bst6I CTCTTC 2 cut(s) 239, 586
BstBAI YACGTR 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 239, 489
BstDSI CCRYGG 1 cut(s) 107
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 253, 499, 514
BstKTI GATC 4 cut(s) 81, 136, 351, 536
BstMBI GATC 4 cut(s) 78, 133, 348, 533
BstNI CCWGG 2 cut(s) 525, 531
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 2 cut(s) 523, 529
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 2 cut(s) 114, 562
BstV2I GAAGAC 2 cut(s) 265, 490
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 489
BsuRI GGCC 3 cut(s) 106, 450, 523
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 3 cut(s) 253, 499, 514
BtsIMutI CAGTG 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 521, 527
ClaI ATCGAT 1 cut(s) 351
CviAII CATG 5 cut(s) 108, 294, 317, 470, 548
DdeI CTNAG 2 cut(s) 239, 489
DpnI GATC 4 cut(s) 80, 135, 350, 535
DpnII GATC 4 cut(s) 78, 133, 348, 533
Eam1104I CTCTTC 2 cut(s) 239, 586
EarI CTCTTC 2 cut(s) 239, 586
Eco130I CCWWGG 2 cut(s) 107, 451
Eco47I GGWCC 1 cut(s) 527
Eco72I CACGTG 1 cut(s) 65
Eco81I CCTNAGG 1 cut(s) 489
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 523, 529
EcoT14I CCWWGG 2 cut(s) 107, 451
ErhI CCWWGG 2 cut(s) 107, 451
FaeI CATG 5 cut(s) 111, 297, 320, 473, 551
FaqI GGGAC 2 cut(s) 28, 450
FatI CATG 5 cut(s) 107, 293, 316, 469, 547
Fnu4HI GCNGC 2 cut(s) 128, 576
FokI GGATG 3 cut(s) 240, 506, 521
Fsp4HI GCNGC 2 cut(s) 128, 576
FspBI CTAG 1 cut(s) 338
GluI GCNGC 2 cut(s) 128, 576
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 3 cut(s) 106, 450, 523
HapII CCGG 1 cut(s) 346
Hin1II CATG 5 cut(s) 111, 297, 320, 473, 551
HinfI GANTC 3 cut(s) 83, 174, 438
HpaII CCGG 1 cut(s) 346
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 545
Hpy188I TCNGA 2 cut(s) 24, 567
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 545
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 3 cut(s) 48, 163, 512
HpyCH4IV ACGT 3 cut(s) 64, 100, 186
HpyCH4V TGCA 6 cut(s) 62, 68, 130, 293, 316, 545
HpyF3I CTNAG 2 cut(s) 239, 489
HpySE526I ACGT 3 cut(s) 64, 100, 186
Hsp92II CATG 5 cut(s) 111, 297, 320, 473, 551
Kzo9I GATC 4 cut(s) 78, 133, 348, 533
LmnI GCTCC 2 cut(s) 473, 484
Lsp1109I GCAGC 2 cut(s) 114, 562
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 338
MaeII ACGT 3 cut(s) 64, 100, 186
MaeIII GTNAC 2 cut(s) 364, 385
MalI GATC 4 cut(s) 80, 135, 350, 535
MboI GATC 4 cut(s) 78, 133, 348, 533
MboII GAAGA 7 cut(s) 226, 265, 490, 524, 527, 573, 576
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 547
MlyI GAGTC 2 cut(s) 92, 432
MmeI TCCRAC 2 cut(s) 47, 207
MnlI CCTC 5 cut(s) 45, 52, 484, 573, 589
MseI TTAA 1 cut(s) 479
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 2 cut(s) 525, 531
MvaI CCWGG 2 cut(s) 525, 531
NcoI CCATGG 1 cut(s) 107
NdeII GATC 4 cut(s) 78, 133, 348, 533
NlaIII CATG 5 cut(s) 111, 297, 320, 473, 551
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 2 cut(s) 364, 385
NspI RCATGY 1 cut(s) 551
PfeI GAWTC 1 cut(s) 174
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 2 cut(s) 129, 577
PleI GAGTC 2 cut(s) 91, 432
PmaCI CACGTG 1 cut(s) 65
PmlI CACGTG 1 cut(s) 65
PpsI GAGTC 2 cut(s) 91, 432
Ppu21I YACGTR 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 523, 529
PspCI CACGTG 1 cut(s) 65
PspGI CCWGG 2 cut(s) 523, 529
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 2 cut(s) 521, 527
PsuI RGATCY 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 2 cut(s) 128, 576
Sau3AI GATC 4 cut(s) 78, 133, 348, 533
Sau96I GGNCC 2 cut(s) 521, 527
SchI GAGTC 2 cut(s) 92, 432
ScrFI CCNGG 2 cut(s) 525, 531
SduI GDGCHC 1 cut(s) 547
SetI ASST 8 cut(s) 51, 67, 103, 129, 155, 189, 478, 541
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 284
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 523, 529
StyI CCWWGG 2 cut(s) 107, 451
TaiI ACGT 3 cut(s) 67, 103, 189
TaqI TCGA 3 cut(s) 44, 81, 351
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 2 cut(s) 364, 385
TseI GCWGC 2 cut(s) 127, 575
Tsp45I GTSAC 2 cut(s) 364, 385
TspDTI ATGAA 8 cut(s) 217, 218, 252, 265, 369, 458, 490, 525
TspRI CASTG 1 cut(s) 418
VneI GTGCAC 1 cut(s) 543
VpaK11BI GGWCC 1 cut(s) 527
XagI CCTNNNNNAGG 1 cut(s) 534
XceI RCATGY 1 cut(s) 551
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.