Rorug02G0033200

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013965
Physical Location & Seq
Reverse (-)
2604053 .. 2619030
14978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0033200.1

Sequence Viewer

Length: 372 bp
ATGAGATTACATAAGCTGTTGGTTGGTCGTCTGGACAATAGTGCTGTTTCAGCCACTGGTGCAAAGTTGGCTTTTAAGTCTAATGAAGAGAAAGCAGTTCAAGTAAGGACCGTCCCTCTTGATGATGTGATTCCAGAATCTGAACCTGTTCTTGTGCTCAAAATTGATGTTCAAGGCTGGGAATATCATGTGCTGAAAGGAGATAAGAAGTTACCGTCAAGAGCTGCAAGTGAAGCACAATATCTCATTTATGAGGAAGACGGGTGTTTGTTGGAAGCCAGTAATAGCAGTAAAGTAGAGATCCTCTTCTCTAGTGTGGGTTATCGTCACTGCACGCAGCATGGCACAGATGCACACTACCAAGGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

123

Amino Acids

13.55

Weight (kDa)

5.92

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_21 PF05050 16 - 83 4.2e-10 Methyltransferase FkbM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55190 AT3G13710 AT3G13720
malus_domestica MD02G1076900.v1.1 MD15G1205600.v1.1
prunus_persica Prupe.7G211500_v2.0.a1
pyrus_communis pycom02g06150 pycom15g18240
rosa_chinensis RchiOBHm_Chr2g0093141
rosa_laevigata RLG00000016372
rosa_roxburghii Rroxscaffold_2G00148470
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078800 Rh2BG080100 Rh2CG082300 Rh2DG077800
rosa_wichuraiana Rw2G006770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 295
AgsI TTSAA 2 cut(s) 101, 173
AluBI AGCT 2 cut(s) 16, 224
AluI AGCT 2 cut(s) 16, 224
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 2 cut(s) 56, 140
ApeKI GCWGC 2 cut(s) 224, 337
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 108
AvaII GGWCC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 211, 349
BfaI CTAG 1 cut(s) 312
BisI GCNGC 2 cut(s) 225, 338
BlsI GCNGC 2 cut(s) 226, 339
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 61, 279
BseDI CCNNGG 1 cut(s) 361
BseNI ACTGG 2 cut(s) 61, 279
BseXI GCAGC 2 cut(s) 211, 349
BseYI CCCAGC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 159
BslFI GGGAC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 300
BspPI GGATC 1 cut(s) 295
BsrI ACTGG 2 cut(s) 61, 279
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 112, 216
Bst6I CTCTTC 2 cut(s) 81, 311
BstC8I GCNNGC 1 cut(s) 335
BstKTI GATC 1 cut(s) 303
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 4 cut(s) 50, 59, 68, 233
BstV1I GCAGC 2 cut(s) 211, 349
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 54, 328
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 2 cut(s) 56, 140
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 2 cut(s) 188, 341
CviJI RGCY 6 cut(s) 16, 53, 71, 177, 224, 278
CviKI_1 RGCY 6 cut(s) 16, 53, 71, 177, 224, 278
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 81, 311
EarI CTCTTC 2 cut(s) 81, 311
Eco130I CCWWGG 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 191, 344
FaiI YATR 4 cut(s) 12, 189, 252, 342
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 187, 340
Fnu4HI GCNGC 2 cut(s) 225, 338
Fsp4HI GCNGC 2 cut(s) 225, 338
FspBI CTAG 1 cut(s) 312
GluI GCNGC 2 cut(s) 225, 338
GsaI CCCAGC 1 cut(s) 181
Hin1II CATG 2 cut(s) 191, 344
HinfI GANTC 2 cut(s) 130, 137
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 4 cut(s) 32, 119, 134, 219
HpyCH4III ACNGT 2 cut(s) 112, 216
HpyCH4V TGCA 4 cut(s) 62, 227, 333, 353
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 59, 68, 233
Hsp92II CATG 2 cut(s) 191, 344
Kzo9I GATC 1 cut(s) 300
LpnPI CCDG 6 cut(s) 17, 42, 147, 159, 163, 292
Lsp1109I GCAGC 2 cut(s) 211, 349
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 210, 326
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 3 cut(s) 98, 269, 298
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 4 cut(s) 126, 247, 314, 359
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 2 cut(s) 75, 370
MwoI GCNNNNNNNGC 4 cut(s) 50, 59, 68, 233
NdeII GATC 1 cut(s) 300
NlaIII CATG 2 cut(s) 191, 344
NmuCI GTSAC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 130, 137
PkrI GCNGC 2 cut(s) 226, 339
PspFI CCCAGC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 108
PstNI CAGNNNCTG 2 cut(s) 56, 140
PsuI RGATCY 1 cut(s) 300
SaqAI TTAA 2 cut(s) 75, 370
SatI GCNGC 2 cut(s) 225, 338
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 1 cut(s) 108
SduI GDGCHC 1 cut(s) 159
SetI ASST 4 cut(s) 18, 148, 226, 370
SfaNI GCATC 1 cut(s) 340
SinI GGWCC 1 cut(s) 108
Sse9I AATT 1 cut(s) 162
SspMI CTAG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 112, 216
TasI AATT 1 cut(s) 162
TfiI GAWTC 2 cut(s) 130, 137
Tru1I TTAA 2 cut(s) 75, 370
Tru9I TTAA 2 cut(s) 75, 370
TscAI CASTG 2 cut(s) 61, 335
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 224, 337
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 99
TspRI CASTG 2 cut(s) 61, 335
VpaK11BI GGWCC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.