AT3G13720

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013965
Physical Location & Seq
Reverse (-)
4494979 .. 4496800
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13720.1

Sequence Viewer

Length: 567 bp
ATGACGAACTACGGTGCGATTCCGACGTCGTCTCATGCATCTCCGTTGGTGGATGTCGAGTCTCTCTCACGCGCTAAACACCGTATCAAAGCCGGGCTAGCCACGCGCCGTGCTTGGAGAGTGATGTTCGATTTCCACTCCATGGGACTGCCTCACGGTGTCTCCGATGCGTTCACAAGAATCAAGACCAATCTTGCTTACTTCCGTATGAACTACGCAATCGTTGTCTTGATCGTTATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGTCTTCACCGTCTTGGTCGTTGTTTGGATCTTTCTGTATTTTCTCCGTGATGAGCCTATCAAGCTGTTCCGGTTTCAGATCGATGATCGGACGGTCTTGATTGTTTTATCGGTGTTAACCGTCGTTTTACTCCTGTTGACCAACGCGACGTTTAATATTGTTGGAGCGCTTGTGACCGGAGCTGTGTTGGTTTTGATCCATTCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAGCGGCGACGACTGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

188

Amino Acids

21.12

Weight (kDa)

9.05

Isoelectric Point (pI)

22.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 32 - 173 3.9e-49 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55190 AT3G13710 AT3G13720
malus_domestica MD02G1076900.v1.1 MD15G1205600.v1.1
prunus_persica Prupe.7G211500_v2.0.a1
pyrus_communis pycom02g06150 pycom15g18240
rosa_chinensis RchiOBHm_Chr2g0093141
rosa_laevigata RLG00000016372
rosa_roxburghii Rroxscaffold_2G00148470
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078800 Rh2BG080100 Rh2CG082300 Rh2DG077800
rosa_wichuraiana Rw2G006770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 29, 551
AccB7I CCANNNNNTGG 2 cut(s) 142, 481
AccI GTMKAC 1 cut(s) 560
AccII CGCG 3 cut(s) 72, 106, 422
AciI CCGC 1 cut(s) 521
AclWI GGATC 3 cut(s) 311, 466, 507
AcuI CTGAAG 1 cut(s) 229
AcyI GRCGYC 2 cut(s) 26, 548
AfeI AGCGCT 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 142, 481
AluBI AGCT 3 cut(s) 249, 340, 458
AluI AGCT 3 cut(s) 249, 340, 458
Alw26I GTCTC 4 cut(s) 36, 66, 166, 527
AlwI GGATC 3 cut(s) 311, 466, 507
Aor51HI AGCGCT 1 cut(s) 444
AspLEI GCGC 3 cut(s) 74, 108, 445
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 97
BbsI GAAGAC 2 cut(s) 271, 497
BceAI ACGGC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 4 cut(s) 36, 66, 166, 527
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 446
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 3 cut(s) 47, 157, 268
BmtI GCTAGC 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 271, 497
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 236
BsaHI GRCGYC 2 cut(s) 26, 548
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 2 cut(s) 345, 452
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 432, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 481
Bse8I GATNNNNATC 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 58, 259, 517
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 142, 481
BseMII CTCAG 1 cut(s) 522
Bsh1236I CGCG 3 cut(s) 72, 106, 422
BshVI ATCGAT 1 cut(s) 357
BsiSI CCGG 3 cut(s) 93, 346, 453
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 142, 481
BsmAI GTCTC 4 cut(s) 36, 66, 166, 527
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 159
Bsp143I GATC 7 cut(s) 231, 252, 303, 354, 361, 471, 499
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 523
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 3 cut(s) 72, 106, 422
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 3 cut(s) 311, 466, 507
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 7 cut(s) 231, 252, 303, 354, 361, 471, 499
BssNI GRCGYC 2 cut(s) 26, 548
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 6 cut(s) 14, 83, 158, 286, 370, 397
BstACI GRCGYC 2 cut(s) 26, 548
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 58, 259, 517
BstFNI CGCG 3 cut(s) 72, 106, 422
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 3 cut(s) 74, 108, 445
BstKTI GATC 7 cut(s) 234, 255, 306, 357, 364, 474, 502
BstMAI GTCTC 4 cut(s) 36, 66, 166, 527
BstMBI GATC 7 cut(s) 231, 252, 303, 354, 361, 471, 499
BstMWI GCNNNNNNNGC 3 cut(s) 98, 103, 337
BstSCI CCNGG 1 cut(s) 92
BstUI CGCG 3 cut(s) 72, 106, 422
BstV2I GAAGAC 2 cut(s) 271, 497
BstX2I RGATCY 2 cut(s) 303, 499
BstYI RGATCY 2 cut(s) 303, 499
Bsu15I ATCGAT 1 cut(s) 357
BsuTUI ATCGAT 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 58, 259, 517
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 3 cut(s) 74, 108, 445
ClaI ATCGAT 1 cut(s) 357
CviAII CATG 2 cut(s) 35, 142
CviJI RGCY 8 cut(s) 92, 97, 101, 249, 331, 340, 458, 544
CviKI_1 RGCY 8 cut(s) 92, 97, 101, 249, 331, 340, 458, 544
DdeI CTNAG 1 cut(s) 531
DpnI GATC 7 cut(s) 233, 254, 305, 356, 363, 473, 501
DpnII GATC 7 cut(s) 231, 252, 303, 354, 361, 471, 499
Eco130I CCWWGG 1 cut(s) 141
Eco47III AGCGCT 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 2 cut(s) 38, 145
FaiI YATR 4 cut(s) 36, 143, 209, 553
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 34, 141
FblI GTMKAC 1 cut(s) 560
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 3 cut(s) 65, 246, 524
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 1 cut(s) 98
GlaI GCGC 3 cut(s) 73, 107, 444
GluI GCNGC 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 446
HapII CCGG 3 cut(s) 93, 346, 453
HhaI GCGC 3 cut(s) 74, 108, 445
Hin1I GRCGYC 2 cut(s) 26, 548
Hin1II CATG 2 cut(s) 38, 145
Hin6I GCGC 3 cut(s) 72, 106, 443
HinP1I GCGC 3 cut(s) 72, 106, 443
HincII GTYRAC 3 cut(s) 393, 414, 561
HindII GTYRAC 3 cut(s) 393, 414, 561
HinfI GANTC 3 cut(s) 19, 59, 180
HpaI GTTAAC 1 cut(s) 393
HpaII CCGG 3 cut(s) 93, 346, 453
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 4 cut(s) 174, 393, 414, 561
Hpy188I TCNGA 5 cut(s) 24, 166, 264, 354, 366
Hpy188III TCNNGA 3 cut(s) 184, 229, 373
Hpy8I GTNNAC 4 cut(s) 174, 393, 414, 561
Hpy99I CGWCG 6 cut(s) 28, 31, 401, 427, 529, 562
HpyCH4III ACNGT 6 cut(s) 14, 83, 158, 286, 370, 397
HpyCH4IV ACGT 3 cut(s) 26, 425, 548
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 103, 337
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 3 cut(s) 26, 425, 548
Hsp92I GRCGYC 2 cut(s) 26, 548
Hsp92II CATG 2 cut(s) 38, 145
HspAI GCGC 3 cut(s) 72, 106, 443
KspAI GTTAAC 1 cut(s) 393
Kzo9I GATC 7 cut(s) 231, 252, 303, 354, 361, 471, 499
LmnI GCTCC 2 cut(s) 440, 455
LpnPI CCDG 6 cut(s) 106, 241, 359, 422, 466, 525
LweI GCATC 3 cut(s) 47, 157, 268
MaeI CTAG 1 cut(s) 98
MaeII ACGT 3 cut(s) 26, 425, 548
MaeIII GTNAC 1 cut(s) 448
MalI GATC 7 cut(s) 233, 254, 305, 356, 363, 473, 501
MboI GATC 7 cut(s) 231, 252, 303, 354, 361, 471, 499
MboII GAAGA 5 cut(s) 232, 235, 271, 502, 527
MflI RGATCY 2 cut(s) 303, 499
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 3 cut(s) 47, 287, 418
MnlI CCTC 2 cut(s) 162, 490
Mph1103I ATGCAT 1 cut(s) 40
MseI TTAA 3 cut(s) 392, 429, 565
MspI CCGG 3 cut(s) 93, 346, 453
MspR9I CCNGG 1 cut(s) 94
MvnI CGCG 3 cut(s) 72, 106, 422
MwoI GCNNNNNNNGC 3 cut(s) 98, 103, 337
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 141
NdeII GATC 7 cut(s) 231, 252, 303, 354, 361, 471, 499
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 38, 145
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 40
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 282, 554
PfeI GAWTC 2 cut(s) 19, 180
PflFI GACNNNGTC 1 cut(s) 28
PflMI CCANNNNNTGG 2 cut(s) 142, 481
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PsuI RGATCY 2 cut(s) 303, 499
PsyI GACNNNGTC 1 cut(s) 28
SalI GTCGAC 1 cut(s) 559
SaqAI TTAA 3 cut(s) 392, 429, 565
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 7 cut(s) 231, 252, 303, 354, 361, 471, 499
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 94
SetI ASST 6 cut(s) 29, 251, 342, 428, 460, 551
SfaNI GCATC 3 cut(s) 47, 157, 268
SsiI CCGC 1 cut(s) 521
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 6 cut(s) 14, 83, 158, 286, 370, 397
TaiI ACGT 3 cut(s) 29, 428, 551
TaqI TCGA 4 cut(s) 57, 129, 357, 560
TauI GCSGC 1 cut(s) 524
TfiI GAWTC 2 cut(s) 19, 180
Tru1I TTAA 3 cut(s) 392, 429, 565
Tru9I TTAA 3 cut(s) 392, 429, 565
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 224, 528
TspGWI ACGGA 4 cut(s) 33, 194, 311, 509
Tth111I GACNNNGTC 1 cut(s) 28
Van91I CCANNNNNTGG 2 cut(s) 142, 481
XmiI GTMKAC 1 cut(s) 560
XspI CTAG 1 cut(s) 98
ZraI GACGTC 2 cut(s) 27, 549
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.