pycom02g06150

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013965
Physical Location & Seq
Reverse (-)
4193841 .. 4194444
604 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06150.2

Sequence Viewer

Length: 552 bp
ATGACAACGTACGGGACTATCCCGACCGAACCCCTGGCATCCTTGAACCAACATTTCGTCCCACGCGCAAAAGAACAGATCCAATCAGCCCTAAGCAACCGAAGACCATGGCAGGAAATTATACAACTGCAAAATCTCACCCTTCCCTCCACCTTCAACCAATCAGTCCATAGAATCAAGACGAATGTCGTCTTCTTTCGCATGAACTACGCCATCATCACATTTTCCATCCTCTTCCTAAGCCTCCTATGGCACCCCATTTCGTTGATCGATCCTCATCGTCATGATGGGTACCGGATCAACGGGCAAGTGATGATGATGGCCCTGTTGGTGGTCACACTCGTCGCGCTTTACCTTACTAACGCGAGATATCATATCGTCGCCGGACTCTGCATTGGCCTCGCGGTTGTTCTGGTGCATGGAGCTCTGAGGGAGCCTGAGGATGTCTTCGTTGTGGATGATGAAGGAACAGGATCAGGTGGAGGTGGTGCACATGTTCACAAAGTGCCTCTCAAACATGCTGCCTCTTCTTCTTATTCTTTGGCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

184

Amino Acids

20.31

Weight (kDa)

9.17

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55190 AT3G13710 AT3G13720
malus_domestica MD02G1076900.v1.1 MD15G1205600.v1.1
prunus_persica Prupe.7G211500_v2.0.a1
pyrus_communis pycom02g06150 pycom15g18240
rosa_chinensis RchiOBHm_Chr2g0093141
rosa_laevigata RLG00000016372
rosa_roxburghii Rroxscaffold_2G00148470
rosa_rugosa Rorug02G0033200
rosa_samantha Rh2AG078800 Rh2BG080100 Rh2CG082300 Rh2DG077800
rosa_wichuraiana Rw2G006770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 2 cut(s) 252, 291
AccII CGCG 4 cut(s) 66, 347, 365, 404
AciI CCGC 1 cut(s) 404
AclWI GGATC 4 cut(s) 73, 266, 305, 481
AcoI YGGCCR 1 cut(s) 543
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 2 cut(s) 11, 293
AfiI CCNNNNNNNGG 1 cut(s) 331
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 2 cut(s) 46, 157
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw21I GWGCWC 2 cut(s) 427, 493
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 4 cut(s) 73, 266, 305, 481
AoxI GGCC 3 cut(s) 321, 397, 543
ApaLI GTGCAC 1 cut(s) 489
ApeKI GCWGC 1 cut(s) 521
Asp718I GGTACC 1 cut(s) 291
AspLEI GCGC 2 cut(s) 68, 349
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 493
BalI TGGCCA 1 cut(s) 545
BanI GGYRCC 2 cut(s) 252, 291
BanII GRGCYC 1 cut(s) 427
BbsI GAAGAC 3 cut(s) 109, 184, 439
Bbv12I GWGCWC 2 cut(s) 427, 493
BbvI GCAGC 1 cut(s) 508
BccI CCATC 4 cut(s) 221, 236, 281, 313
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 35
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 3 cut(s) 254, 293, 435
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 47
BoxI GACNNNNGTC 1 cut(s) 185
BpiI GAAGAC 3 cut(s) 109, 184, 439
Bpu10I CCTNAGC 2 cut(s) 92, 239
Bsa29I ATCGAT 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 33, 107
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse21I CCTNAGG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 33, 107
BseGI GGATG 4 cut(s) 38, 228, 448, 463
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 419, 429
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 1 cut(s) 508
Bsh1236I CGCG 4 cut(s) 66, 347, 365, 404
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 3 cut(s) 323, 399, 545
BshNI GGYRCC 2 cut(s) 252, 291
BshVI ATCGAT 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 427, 493
BsiSI CCGG 2 cut(s) 295, 384
BsiWI CGTACG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 28, 44
BslI CCNNNNNNNGG 1 cut(s) 331
BsmFI GGGAC 2 cut(s) 28, 44
BsnI GGCC 3 cut(s) 323, 399, 545
Bsp1286I GDGCHC 2 cut(s) 427, 493
Bsp143I GATC 5 cut(s) 78, 267, 271, 297, 473
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 1 cut(s) 404
BspANI GGCC 3 cut(s) 323, 399, 545
BspCNI CTCAG 2 cut(s) 420, 430
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 4 cut(s) 66, 347, 365, 404
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 254, 293, 435
BspPI GGATC 4 cut(s) 73, 266, 305, 481
BspT107I GGYRCC 2 cut(s) 252, 291
BssECI CCNNGG 2 cut(s) 33, 107
BssMI GATC 5 cut(s) 78, 267, 271, 297, 473
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 35
Bst6I CTCTTC 2 cut(s) 239, 532
BstDEI CTNAG 4 cut(s) 92, 239, 428, 438
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 4 cut(s) 38, 228, 448, 463
BstFNI CGCG 4 cut(s) 66, 347, 365, 404
BstHHI GCGC 2 cut(s) 68, 349
BstKTI GATC 5 cut(s) 81, 270, 274, 300, 476
BstMBI GATC 5 cut(s) 78, 267, 271, 297, 473
BstMCI CGRYCG 1 cut(s) 27
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 2 cut(s) 497, 521
BstPAI GACNNNNGTC 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 493
BstUI CGCG 4 cut(s) 66, 347, 365, 404
BstV1I GCAGC 1 cut(s) 508
BstV2I GAAGAC 3 cut(s) 109, 184, 439
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 3 cut(s) 323, 399, 545
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 4 cut(s) 38, 228, 448, 463
CciI TCATGA 1 cut(s) 283
CfoI GCGC 2 cut(s) 68, 349
Cfr13I GGNCC 1 cut(s) 322
ClaI ATCGAT 1 cut(s) 270
Csp6I GTAC 2 cut(s) 10, 292
CviAII CATG 6 cut(s) 108, 202, 284, 419, 494, 518
CviJI RGCY 7 cut(s) 89, 243, 323, 399, 425, 436, 545
CviKI_1 RGCY 7 cut(s) 89, 243, 323, 399, 425, 436, 545
CviQI GTAC 2 cut(s) 10, 292
DdeI CTNAG 4 cut(s) 92, 239, 428, 438
DpnI GATC 5 cut(s) 80, 269, 273, 299, 475
DpnII GATC 5 cut(s) 78, 267, 271, 297, 473
DraIII CACNNNGTG 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 239, 532
EarI CTCTTC 2 cut(s) 239, 532
Ecl136II GAGCTC 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 425
Eco81I CCTNAGG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 33
EcoRV GATATC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 6 cut(s) 111, 205, 287, 422, 497, 521
FaqI GGGAC 2 cut(s) 28, 44
FatI CATG 6 cut(s) 107, 201, 283, 418, 493, 517
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 4 cut(s) 25, 215, 455, 470
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 522
GlaI GCGC 2 cut(s) 67, 348
GluI GCNGC 1 cut(s) 522
HaeIII GGCC 3 cut(s) 323, 399, 545
HapII CCGG 2 cut(s) 295, 384
HhaI GCGC 2 cut(s) 68, 349
Hin1II CATG 6 cut(s) 111, 205, 287, 422, 497, 521
Hin6I GCGC 2 cut(s) 66, 347
HinP1I GCGC 2 cut(s) 66, 347
HinfI GANTC 2 cut(s) 174, 387
HpaII CCGG 2 cut(s) 295, 384
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 491, 499
Hpy188I TCNGA 1 cut(s) 429
Hpy188III TCNNGA 3 cut(s) 22, 178, 284
Hpy8I GTNNAC 2 cut(s) 491, 499
Hpy99I CGWCG 2 cut(s) 347, 383
HpyAV CCTTC 3 cut(s) 152, 163, 458
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 130, 393, 418, 491
HpyF3I CTNAG 4 cut(s) 92, 239, 428, 438
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 6 cut(s) 111, 205, 287, 422, 497, 521
HspAI GCGC 2 cut(s) 66, 347
KpnI GGTACC 1 cut(s) 295
Kzo9I GATC 5 cut(s) 78, 267, 271, 297, 473
LmnI GCTCC 2 cut(s) 422, 433
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 1 cut(s) 47
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 334
MalI GATC 5 cut(s) 80, 269, 273, 299, 475
MboI GATC 5 cut(s) 78, 267, 271, 297, 473
MboII GAAGA 6 cut(s) 114, 184, 226, 439, 519, 522
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 427, 493
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 381
Mox20I TGGCCA 1 cut(s) 545
MscI TGGCCA 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 545
MspI CCGG 2 cut(s) 295, 384
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 4 cut(s) 66, 347, 365, 404
NcoI CCATGG 1 cut(s) 107
NdeII GATC 5 cut(s) 78, 267, 271, 297, 473
NlaIII CATG 6 cut(s) 111, 205, 287, 422, 497, 521
NlaIV GGNNCC 3 cut(s) 254, 293, 435
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 2 cut(s) 497, 521
PagI TCATGA 1 cut(s) 283
PciI ACATGT 1 cut(s) 493
PfeI GAWTC 1 cut(s) 174
Pfl23II CGTACG 1 cut(s) 9
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
PscI ACATGT 1 cut(s) 493
PshAI GACNNNNGTC 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspLI CGTACG 1 cut(s) 9
PspN4I GGNNCC 3 cut(s) 254, 293, 435
PspPI GGNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 2 cut(s) 11, 293
RsaNI GTAC 2 cut(s) 10, 292
RseI CAYNNNNRTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 427
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 5 cut(s) 78, 267, 271, 297, 473
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 2 cut(s) 427, 493
SetI ASST 6 cut(s) 11, 155, 357, 427, 481, 487
SfaNI GCATC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 1 cut(s) 117
SsiI CCGC 1 cut(s) 404
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 270
TaqII GACCGA 1 cut(s) 41
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 174
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 218, 477
VneI GTGCAC 1 cut(s) 489
XceI RCATGY 2 cut(s) 497, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.